CoNCRAtlas



CoNCRAtlas ID CoMIRGH031
Mature miRNA sequence UGACAGAAGAGAGUGAGCAC
Locus A05:5639298-5639396(+)
Alignment
Displayed Location: A05:5639284-5639405 Strand: +
CUUCUUUGGGACAUAGAAAUUGACAGAAGAGAGUGAGCACACAGAGGCACUUGUAUAAGGCUAUACUUCUGCUUUUGCGUGCUCACUUCUCUUUUUGUCAGUUUCCAGUGCCGGAAUUUGAU
......(((((((..(((((((((((((((((((((((((.((((((((...(((((....)))))...)))))))).)))))))).)))).)))))))))))))(((.(((((((..((((
....................UGACAGAAGAGAGUGAGCAC.................................................................................. ghi-miR157
................................................................................GCUCACUUCUCUUUUUGUCAGU.................... ghi-miR157*
miRNA family miR157

Expression profile

Tissue specificity indexfiber: 0.0002; shoot apical: 0.0651; cotyledon: 0.0042; callus: 0.0004; leaf: 0.0609; anthers: 0.0022; hypocotyls: 0.862; seedlings: 0.005 | Tau: 0.984
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A0556388785644186+CoLNCGH24214
A0556389155644186+CoLNCGH24215
A0556389155644186+CoLNCGH24216
A0556389155644186+CoLNCGH24217
A0556389175644186+CoLNCGH24218
A0556389185644186+CoLNCGH24219
A0556389205644186+CoLNCGH24220
A0556389205644186+CoLNCGH24221
A0556389205644186+CoLNCGH24222
A0556389315644186+CoLNCGH24223
A0556389675644186+CoLNCGH24224
A0556389025644186+CoLNCGH24225
A0556389025644186+CoLNCGH24226
A0556389025644186+CoLNCGH24227
A0556389025644186+CoLNCGH24228
A0556389025644186+CoLNCGH24229
A0556389085644186+CoLNCGH24230
A0556389155644186+CoLNCGH24231
A0556389155644186+CoLNCGH24232
Target lncRNA CoLNCGH29713, CoLNCGH02111, CoLNCGH34498, CoLNCGH44410, CoLNCGH44411, CoLNCGH10303, CoLNCGH10302, CoLNCGH33545, CoLNCGH33544, CoLNCGH44573
Target CDS Gh_A13G086100.4, Gh_D13G092600.1, Gh_D13G092600.2, Gh_A13G086100.3, Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2
sORF
Reference
PMID Title
0Differential Expression of MicroRNAs Between 21A Genetic Male Sterile Line and Its Maintainer Line in Cotton (Gossypium hirsutum L.)