| CoNCRAtlas ID | CoMIRGH030 |
|---|---|
| Mature miRNA sequence | UGACAGAAGAGAGUGAGCAC |
| Locus | A05:3967197-3967293(-) |
| Alignment | Displayed Location: A05:3967183-3967313 Strand: - GGGUUUUAGGGUAAGGGAGGUGACAGAAGAGAGUGAGCACACAGGGUUCUUUCUUGCAUGCUUGAGCCUUUCAUGCUUGAAGCUCUACGUGCUCACUCUCUAUCUGUCAUCCACUUCUCUCUCUCUCUCUC (((....((((..(((..((((((((((((((((((((((..(((((...(((..(((((...........)))))..))))))))..))))))))))))).)))))))))..)))..))))..)))))). ....................UGACAGAAGAGAGUGAGCAC........................................................................................... ghi-miR156a ..........................................................................................GCUCACUCUCUAUCUGUCAUC.................... ghi-miR156a* |
| miRNA family | miR156 |
Expression profile
| Tissue specificity index | fiber: 0.0008; shoot apical: 0.0019; cotyledon: 0.0456; cotton boll: 0.0058; callus: 0.0355; leaf: 0.0018; anthers: 0.0003; hypocotyls: 0.8783; seedlings: 0.0299 | Tau: 0.9861 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH29713, CoLNCGH02111, CoLNCGH02111, CoLNCGH34482, CoLNCGH34487, CoLNCGH34488, CoLNCGH34490, CoLNCGH34491, CoLNCGH34486, CoLNCGH34485 |
|---|
| Target CDS | Gh_A13G086100.4, Gh_D13G092600.1, Gh_D13G092600.2, Gh_A13G086100.3, Gh_D01G171200.1, Gh_A03G148200.1, Gh_A03G148200.2, Gh_D02G166800.1, Gh_A01G173100.1, Gh_A01G173100.2 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 22160515 | Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity |