CoNCRAtlas


CoNCRAtlas ID CoMIRGH028
Mature miRNA sequence AUUGAGUGCAGCGUUGAUGAA
Locus A05:16355891-16355992(-)
Alignment 
Displayed Location: A05:16355881-16355986 Strand: -
CCCCGGAUGGAAGAAACAUCAUUGAGUGCAGCGUUGAUGAAAUUUCUCAAUUUCUGAGAUGAAUUCGUCAGCGCUGCUCUCAAUCAUGUUUUUUUCCUUUCGAGAA
...((((.(((((((((((.((((((.((((((((((((((...(((((.....)))))....)))))))))))))).)))))).))).)))))))).))))....
....................AUUGAGUGCAGCGUUGAUGAA................................................................. ghi-miR397a
.................................................................CGUCAGCGCUGCUCUCAAUCA.................... ghi-miR397a*
miRNA family miR397

Expression profile

Tissue specificity indexovule: 0.0069; fiber: 0.2177; shoot apical: 0.0292; ovule and fiber: 0.0304; cotyledon: 0.1165; cotton boll: 0.0379; callus: 0.4798; leaf: 0.0465; anthers: 0.0239; hypocotyls: 0.0113 | Tau: 0.8916
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH13012, CoLNCGH25194, CoLNCGH28971, CoLNCGH48164, CoLNCGH48163, CoLNCGH48161, CoLNCGH48162, CoLNCGH48160, CoLNCGH13855, CoLNCGH48159
Target CDS Gh_A13G099700.1, Gh_D13G103500.1, Gh_A13G024900.1, Gh_D13G026700.1, Gh_D04G147100.1, Gh_A11G377400.1, Gh_D11G384900.1, Gh_A13G032800.1, Gh_A13G032900.1, Gh_A03G063500.1
sORF
Reference
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PMID Title