| CoNCRAtlas ID | CoMIRGH027 |
|---|---|
| Mature miRNA sequence | UGCCAAAGGAGAAUUGCCCUG |
| Locus | A05:14898997-14899074(-) |
| Alignment | Displayed Location: A05:14898978-14899093 Strand: - UGUGCAGUUGUGAAAUAACAGUGCAGUCCUCCUUUGGCACAGAGAAGAACAUGGCUUACUUAAAACUUCUGGCUUUGCCAAAGGAGAAUUGCCCUGCCAUUCACUCCUGCAGUUAC ..(((((..(((((....(((.(((((.(((((((((((.(((((((.....((....)).....)))))..)).))))))))))).))))).)))...)))))..)))))..))) ...........................................................................UGCCAAAGGAGAAUUGCCCUG.................... ghi-miR399b ....................GUGCAGUCCUCCUUUGGCACA........................................................................... ghi-miR399b* |
| miRNA family | miR399 |
Expression profile
| Tissue specificity index | ovule: 0.2988; fiber: 0.0739; shoot apical: 0.0425; cotyledon: 0.0615; cotton boll: 0.2955; leaf: 0.0747; anthers: 0.0342; hypocotyls: 0.0068; seedlings: 0.1121 | Tau: 0.7653 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH02794, CoLNCGH02793, CoLNCGH18706, CoLNCGH43542, CoLNCGH43543, CoLNCGH43544, CoLNCGH43545, CoLNCGH43546, CoLNCGH43547, CoLNCGH43548 |
|---|
| Target CDS | Gh_D06G192500.4, Gh_A06G190300.1, Gh_A06G190300.2, Gh_A06G190300.3, Gh_D06G192500.1, Gh_D06G192500.2, Gh_D06G192500.3, Gh_D06G192500.5, Gh_A06G050900.1, Gh_D06G049900.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 22160515 | Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity |