| CoNCRAtlas ID | CoMIRGH026 |
|---|---|
| Mature miRNA sequence | UGCCAAUGGAGAUUUGCCCCG |
| Locus | A05:14885144-14885227(+) |
| Alignment | Displayed Location: A05:14885125-14885247 Strand: + UCAGCUGCGGUUGCAUUACAGGGCAAAAUCUCCUCUGGCAGCCAGCCAUUGCCACUUCACCUAUGAAUUCUAGUGUGCUCUCUGCCAAUGGAGAUUUGCCCCGCAAUUCCACUGCAACAUUCA )....((((((.(.(((.(.(((((((.(((((..((((((..((((((((....((((....))))...))))).)))..))))))..)))))))))))).).))).).))))))..((((. ..................................................................................UGCCAAUGGAGAUUUGCCCCG.................... ghi-miR399a ....................GGGCAAAAUCUCCUCUGGCAGC................................................................................. ghi-miR399a* |
| miRNA family | miR399 |
Expression profile
| Tissue specificity index | ovule: 0.011; fiber: 0.326; shoot apical: 0.0276; ovule and fiber: 0.037; cotyledon: 0.0681; cotton boll: 0.2164; leaf: 0.1123; anthers: 0.1079; hypocotyls: 0.0405; seedlings: 0.0531 | Tau: 0.7932 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH51698, CoLNCGH28866, CoLNCGH28867, CoLNCGH28868, CoLNCGH35727, CoLNCGH35726, CoLNCGH35725, CoLNCGH35724, CoLNCGH35723, CoLNCGH35722 |
|---|
| Target CDS | Gh_D05G345900.1, Gh_D13G232100.1, Gh_A13G228000.1, Gh_A08G246600.1, Gh_D08G238000.1, Gh_A04G049800.1, Gh_A01G052400.1, Gh_D01G048000.1, Gh_D02G031300.1, Gh_D09G016600.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 22160515 | Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity |