| CoNCRAtlas ID | CoMIRGH022 |
|---|---|
| Mature miRNA sequence | CAGCCAAGGAUGACUUGCCGG |
| Locus | A04:84507707-84507913(-) |
| Alignment | Displayed Location: A04:84507709-84507910 Strand: - UUAAAUGAGGUACAGUACUGCAGCCAAGGAUGACUUGCCGGUCGGCUAAGCCAUCUCUUCCAUAUUAUAUUCUGUUAUUAUGUUCAUUUUAUUGCCAAAGAUUUGAACAAGACUGUAAUACAUAAAUGAAACAAAACCUUUGGAGGAGAUAACAUCGAUCCGGCAAGUUGUCCUCGGCUACAAUUCUGUCUCAUUUUCACUU ..(((((((..((((...((.((((.(((((((((((((((((((.......(((((((((((((((((.(((.......((((((..((.........))..))))))))).)))))))....................))))))))))....)))).))))))))))))))).)))).))...)))))))))))..)).) ....................CAGCCAAGGAUGACUUGCCGG................................................................................................................................................................. ghi-miR169a .................................................................................................................................................................GGCAAGUUGUCCUCGGCUACA.................... ghi-miR169a* |
| miRNA family | miR169 |
Expression profile
| Tissue specificity index | ovule: 0.0515; fiber: 0.1486; shoot apical: 0.1693; ovule and fiber: 0.0574; cotyledon: 0.0608; cotton boll: 0.0121; callus: 0.0005; leaf: 0.0502; anthers: 0.2321; hypocotyls: 0.0745; seedlings: 0.143 | Tau: 0.6692 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH23852, CoLNCGH23852, CoLNCGH34206, CoLNCGH24405, CoLNCGH24408, CoLNCGH24409, CoLNCGH24410, CoLNCGH24411, CoLNCGH24412, CoLNCGH24413 |
|---|
| Target CDS | Gh_D03G101800.1, Gh_A03G094800.1, Gh_A02G022600.1, Gh_D08G100000.2, Gh_A08G100700.1, Gh_D08G100000.1, Gh_A10G062400.1, Gh_A08G218800.3, Gh_A08G218800.1, Gh_A08G218800.2 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 22160515 | Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity |