CoNCRAtlas


CoNCRAtlas ID CoMIRGH021
Mature miRNA sequence UCGGACCAGGCUUCAUUCCUC
Locus A04:83730048-83730284(-)
Alignment 
Displayed Location: A04:83730142-83730258 Strand: -
AAAAAUGGUAGAUUUUGAGGGGAAUGUUGGCUGGCUCGAAGCUUAAACAAAUAUAGCUUCGGUUUUGGUUUAAGUUUCGGACCAGGCUUCAUUCCUCUCAAAAAUUUAUGCAUGUAU
.......(((((((((((((((((((..(.((((.(((((((((((((......(((....)))...))))))))))))).)))).)..)))))))))).)))))))))((((((((
............................................................................UCGGACCAGGCUUCAUUCCUC.................... ghi-miR166a
....................GGAAUGUUGGCUGGCUCGAAG............................................................................ ghi-miR166a*
miRNA family miR166

Expression profile

Tissue specificity indexovule: 0.0427; fiber: 0.0205; shoot apical: 0.0852; ovule and fiber: 0.0466; cotyledon: 0.0263; cotton boll: 0.0043; callus: 0.0207; leaf: 0.0825; anthers: 0.5265; hypocotyls: 0.1409; seedlings: 0.0039 | Tau: 0.9101

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH30892, CoLNCGH49394, CoLNCGH30891, CoLNCGH49395, CoLNCGH30892, CoLNCGH49394, CoLNCGH49395, CoLNCGH30891, CoLNCGH04460, CoLNCGH02856
Target CDS Gh_A05G118500.1, Gh_D05G130700.1, Gh_A08G089300.1, Gh_A13G137400.1, Gh_A12G088500.1, Gh_A07G025800.1, Gh_A05G090100.1, Gh_A06G103200.1, Gh_A08G225500.1, Gh_D05G049400.1
sORF
Reference
PMID Title
No references available