CoNCRAtlas


CoNCRAtlas ID CoMIRGH018
Mature miRNA sequence GCUGUUGAGGUUAGAGAGUCUAGG
Locus A03:97881236-97881460(-)
Alignment 
Displayed Location: A03:97881271-97881413 Strand: -
UUAUGAGAUUUAUAUGGACCUAGGCUCUCCAACCUCAUUAGUUAGCUUUUGGGGUGUGGUUCUUCAAAGGUUCAUAUAAACCCCACACCCUAAAAGCUAGCUGUUGAGGUUAGAGAGUCUAGGUCCAUAUAAACCCCUAAAGG
((..(.(.(((((((((((((((((((((.(((((((.(((((((((((((((((((((.........((((......))))))))))))))))))))))))).))))))).))))))))))))))))))))).).)..))))
...................................................................................................GCUGUUGAGGUUAGAGAGUCUAGG.................... ghi-miRN5
....................UAGGCUCUCCAACCUCAUUAGUUA................................................................................................... ghi-miRN5*
miRNA family miRN5

Expression profile

Tissue specificity indexovule: 0.0377; fiber: 0.0363; shoot apical: 0.5468; ovule and fiber: 0.0967; cotyledon: 0.0068; cotton boll: 0.0318; callus: 0.0386; leaf: 0.0665; anthers: 0.0591; hypocotyls: 0.0752; seedlings: 0.0045 | Tau: 0.9171

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH33676, CoLNCGH05930, CoLNCGH05929, CoLNCGH12904, CoLNCGH12905, CoLNCGH12903, CoLNCGH07323, CoLNCGH10383, CoLNCGH10382, CoLNCGH43045
Target CDS Gh_A11G058900.1, Gh_D08G042200.1, Gh_D12G068100.1, Gh_A13G014400.1, Gh_D13G014100.1, Gh_A02G162300.1, Gh_A07G042300.1, Gh_D08G259100.1, Gh_D05G212800.1, Gh_A08G278200.1
sORF
Reference
PMID Title
No references available