CoNCRAtlas


CoNCRAtlas ID CoMIRGH017
Mature miRNA sequence UUUGUAUGUGGCGGGAGAUAU
Locus A03:69771483-69771663(+)
Alignment 
Displayed Location: A03:69771473-69771691 Strand: +
AUCACUAUUUAUUUGCUCUUUUUGUAUGUGGCGGGAGAUAUUGUAGGGAAAACCUUUUUCUUACUAACUUAUCUCUUAGAUAUUAGAAAAAAAAGAGGACCGAAUUUAAAGAUAAGUUUAUUAGAAACUGGUGGAUUUGGGCCGAAAUAAAAAAUGCUAAUAUUUUUUUCCCUCCAAUAUCUUCCGCCAUAUACAAAAGGAGCAAAUAAAUAGUAAACG
...((((((((((((((((((((((((((((((((((((((((.((((((((.((((((.((.((((..(((((...))))))))))).)))))).((.(((((((((......(((((.....)))))..))))))))).))......................)))))))).))))))))))))))))))))))))))))))))))))))))...))
....................UUUGUAUGUGGCGGGAGAUAU.................................................................................................................................................................................. ghi-miRN4
..................................................................................................................................................................................AUCUUCCGCCAUAUACAAAAG.................... ghi-miRN4*
miRNA family miRN4

Expression profile

Tissue specificity indexovule: 0.0068; fiber: 0.0121; shoot apical: 0.7615; ovule and fiber: 0.0116; cotyledon: 0.011; cotton boll: 0.0033; callus: 0.0043; leaf: 0.0392; anthers: 0.0686; hypocotyls: 0.0587; seedlings: 0.0229 | Tau: 0.9687

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH02605, CoLNCGH29833, CoLNCGH29843, CoLNCGH29853, CoLNCGH03084, CoLNCGH29841, CoLNCGH29852, CoLNCGH29471, CoLNCGH29472, CoLNCGH03083
Target CDS Gh_A06G094700.1, Gh_D05G116900.1, Gh_D03G031900.1, Gh_D07G037600.1, Gh_Contig00774_ERROPOS2452212+G000500.1, Gh_A10G149000.1, Gh_D10G124600.1, Gh_D04G178800.1, Gh_D04G178900.1, Gh_A04G139900.1
sORF
Reference
PMID Title
No references available