| CoNCRAtlas ID | CoMIRGH016 |
|---|---|
| Mature miRNA sequence | AGAAUCUUGAUGAUGCUGCAU |
| Locus | A03:5840132-5840261(+) |
| Alignment | Displayed Location: A03:5840151-5840266 Strand: + GACAGUCGUUGUUUGCAGGUGUAGCAUCAUCAAGAUUCACAUGCAAAUUAUAUUGCUAAAAGUUAUUUGAAACUGAGAAUCUUGAUGAUGCUGCAUCGGCAAUAAACGACUACACA )).(((((((..((((.(((((((((((((((((((((....((((......))))....((((......))))..))))))))))))))))))))).))))..)))))))....) ...........................................................................AGAAUCUUGAUGAUGCUGCAU.................... ghi-miR172a ....................GUAGCAUCAUCAAGAUUCACA........................................................................... ghi-miR172a* |
| miRNA family | miR172 |
Expression profile
| Tissue specificity index | ovule: 0.016; fiber: 0.1256; shoot apical: 0.3584; ovule and fiber: 0.0073; cotyledon: 0.0023; cotton boll: 0.0107; leaf: 0.0661; anthers: 0.2703; hypocotyls: 0.1412; seedlings: 0.0021 | Tau: 0.821 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH19317, CoLNCGH19318, CoLNCGH14894, CoLNCGH44731, CoLNCGH44732, CoLNCGH44733, CoLNCGH21180, CoLNCGH11963, CoLNCGH19317, CoLNCGH19318 |
|---|
| Target CDS | Gh_D03G149700.1, Gh_A08G001700.1, Gh_D08G002300.1, Gh_D10G236700.1, Gh_A01G243500.1, Gh_D01G237900.1, Gh_A05G087000.1, Gh_A03G047000.1, Gh_D05G092100.1, Gh_D05G098700.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 28327647 | MicroRNA expression profiles during cotton (Gossypium hirsutum L) fiber early development |