CoNCRAtlas


CoNCRAtlas ID CoMIRGH015
Mature miRNA sequence UCGAUAAACCUCUGCAUCCAG
Locus A03:22694857-22694982(-)
Alignment 
Displayed Location: A03:22694855-22694983 Strand: -
AAAAAAGGGGUAAAGACACUGGAGGCAGCGGUUCAUCGAUCUCUUCCUGAGAAUUUUGUUGUGAGAAUAACACAAAUACAUGAAUCGAUCGAUAAACCUCUGCAUCCAGCGCCUUAACUCUCUUUUAUU
(.(((((((((.(((.(.(((((.((((.((((.(((((((..(((.((...((((((((((....)))))).)))).)).)))..))))))).)))).)))).))))).).))).)).))))))).))
........................................................................................UCGAUAAACCUCUGCAUCCAG.................... ghi-miR162a
....................GGAGGCAGCGGUUCAUCGAUC........................................................................................ ghi-miR162a*
miRNA family miR162

Expression profile

Tissue specificity indexovule: 0.3446; fiber: 0.0806; shoot apical: 0.0199; ovule and fiber: 0.0165; cotyledon: 0.0077; cotton boll: 0.0565; callus: 0.1876; leaf: 0.2514; anthers: 0.0079; hypocotyls: 0.0196; seedlings: 0.0076 | Tau: 0.8098

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH25584, CoLNCGH37215, CoLNCGH37213, CoLNCGH25161, CoLNCGH15319, CoLNCGH42995, CoLNCGH39301, CoLNCGH39303, CoLNCGH39304, CoLNCGH39306
Target CDS Gh_A08G263600.1, Gh_Contig00606G000600.1, Gh_A12G274800.1, Gh_D12G269200.1, Gh_A07G143700.1, Gh_D07G143000.1, Gh_D07G143000.2, Gh_A07G066400.1, Gh_A03G229000.1, Gh_A11G036700.1
sORF
Reference
PMID Title
28327647MicroRNA expression profiles during cotton (Gossypium hirsutum L) fiber early development