CoNCRAtlas


CoNCRAtlas ID CoMIRGH014
Mature miRNA sequence UGAACUGGGUUUGUUGGCUGC
Locus A03:1538914-1539022(+)
Alignment 
Displayed Location: A03:1538898-1539034 Strand: +
AGUAUUCCAGUAUCUUGAUUUGAACUGGGUUUGUUGGCUGCUGAUUUGCUUUUUUGAAGCAGAUAUCAAAUCUAGUUAAUAAAAACACUUUUCAGGAGCCAACAAAUACAGUUCCAACCAGGACUGGGCUGAGAUUU
(((...((((..(((((.((.((((((.(((((((((((.((((((((((((...)))))))))..........(((......)))......))).))))))))))).)))))).)).)))))))))))))))))))
....................UGAACUGGGUUUGUUGGCUGC................................................................................................ ghi-miR3476a
................................................................................................AGCCAACAAAUACAGUUCCAA.................... ghi-miR3476a*
miRNA family miR3476

Expression profile

Tissue specificity indexovule: 0.0198; fiber: 0.0839; shoot apical: 0.1538; ovule and fiber: 0.0434; cotyledon: 0.0171; cotton boll: 0.0197; callus: 0.0341; leaf: 0.1339; anthers: 0.0873; hypocotyls: 0.3883; seedlings: 0.0187 | Tau: 0.8425

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH00644, CoLNCGH44751, CoLNCGH04801, CoLNCGH04800, CoLNCGH04799, CoLNCGH04798, CoLNCGH04797, CoLNCGH04796, CoLNCGH27506, CoLNCGH27505
Target CDS Gh_D03G185900.1, Gh_A03G013400.1, Gh_D03G185800.1, Gh_A03G013500.1, Gh_A06G016600.1, Gh_D06G029200.1, Gh_A06G029500.1, Gh_Contig00325G000700.1, Gh_A05G049800.1, Gh_D05G065400.1
sORF
Reference
PMID Title
32074966Different MicroRNA Families Involved in Regulating High Temperature Stress Response during Cotton ( Gossypium hirsutum L.) Anther Development