CoNCRAtlas


CoNCRAtlas ID CoMIRGH013
Mature miRNA sequence UUUUGAACUGGAUUUGCCGACU
Locus A03:1465949-1466099(-)
Alignment 
Displayed Location: A03:1465967-1466083 Strand: -
GUCUUAGUUUGCGUCUUGUCUUUUGAACUGGAUUUGCCGACUUGAACUGCGUUGUUGAAGGUUUACAAAACCCGAGCCUGCAAAUCCAGUCAAAAGUUAAACCGGGCUGAGAUUUAC
(((((((((((.((.(((.(((((((.((((((((((.(.(((((((......)))...(((((...))))))))).).))))))))))))))))).))))))))))))))))....
....................UUUUGAACUGGAUUUGCCGACU........................................................................... ghi-miR2949a
............................................................................CCUGCAAAUCCAGUCAAAAGU.................... ghi-miR2949a*
miRNA family miR2949

Expression profile

Tissue specificity indexovule: 0.1552; fiber: 0.1291; shoot apical: 0.0255; ovule and fiber: 0.0173; cotyledon: 0.1048; cotton boll: 0.0165; callus: 0.0479; leaf: 0.2322; anthers: 0.0224; hypocotyls: 0.1923; seedlings: 0.0568 | Tau: 0.6693
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A0314636421468446-CoLNCGH08742
A0314636771468446-CoLNCGH08743
A0314636771468446-CoLNCGH08744
A0314636951468446-CoLNCGH08745
A0314638271468446-CoLNCGH08746
A0314638611467401-CoLNCGH08747
Target lncRNA CoLNCGH46040, CoLNCGH46041, CoLNCGH18389, CoLNCGH00459, CoLNCGH00458, CoLNCGH00457, CoLNCGH00456, CoLNCGH00455, CoLNCGH00453, CoLNCGH00452
Target CDS Gh_D12G207200.3, Gh_A13G067900.1, Gh_D03G186800.1, Gh_A12G114000.1, Gh_A03G012400.1, Gh_D03G186600.1, Gh_D03G186900.1, Gh_A04G099000.1, Gh_A10G231500.1, Gh_D12G113900.1
sORF
Reference
PMID Title
32074966Different MicroRNA Families Involved in Regulating High Temperature Stress Response during Cotton ( Gossypium hirsutum L.) Anther Development