| CoNCRAtlas ID | CoMIRGH009 |
|---|---|
| Mature miRNA sequence | UUCCACGGCUUUCUUGAACUU |
| Locus | A03:103812252-103812342(+) |
| Alignment | Displayed Location: A03:103812235-103812358 Strand: + GGAGGUUCGUUUGCAUGCUUUUCCACGGCUUUCUUGAACUUCUUUUUCUCUCUUUGUGUUAGUAAUGAAUUAAAGAGGAUGAAGGUCAAGAAAGUCAUGGGAAAACAUGAACGGAUUUUGUUUU ))))))...)))))))).(((((((.(((((((((((...(((((.((.(((((((..(((....)))..))))))))).)))))))))))))))).))))))).((((((.((((........ ....................UUCCACGGCUUUCUUGAACUU................................................................................... ghi-miR396a ...................................................................................GGUCAAGAAAGUCAUGGGAAA.................... ghi-miR396a* |
| miRNA family | miR396 |
Expression profile
| Tissue specificity index | ovule: 0.097; fiber: 0.2158; shoot apical: 0.0012; ovule and fiber: 0.004; cotyledon: 0.4388; cotton boll: 0.0803; callus: 0.0085; leaf: 0.0655; anthers: 0.081; hypocotyls: 0.0079 | Tau: 0.8721 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH34024, CoLNCGH20999, CoLNCGH46769, CoLNCGH46770, CoLNCGH52376, CoLNCGH20997, CoLNCGH20998, CoLNCGH34025, CoLNCGH34024, CoLNCGH10733 |
|---|
| Target CDS | Gh_D13G231200.1, Gh_A06G165400.1, Gh_A02G147700.1, Gh_A11G218000.1, Gh_A11G316200.1, Gh_D07G043100.1, Gh_A08G056400.1, Gh_A13G062800.1, Gh_A11G180600.1, Gh_A10G074200.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |