| CoNCRAtlas ID | CoMIRGH006 |
|---|---|
| Mature miRNA sequence | UUGGACAGAGUAAUCACGGUCG |
| Locus | A02:4270942-4271075(-) |
| Alignment | Displayed Location: A02:4270928-4271058 Strand: - UUCAGAUCCGGUCCAUUUGCUUGGACAGAGUAAUCACGGUCGAUUAAAUACUCUUAAUUCUGUUUAGCAAAACAGGUUUCGUUUAAAUCAAUCGUGUUACUCUGUCCAAACAGAUGUUUUGGAUCAUCGAA ((..(((((((..((((((.(((((((((((((.((((((.((((....((.......(((((((....)))))))....))...)))).))))))))))))))))))).))))))..)))))))...))) ....................UUGGACAGAGUAAUCACGGUCG......................................................................................... ghi-miR3954a ..........................................................................................AUCGUGUUACUCUGUCCAAAC.................... ghi-miR3954a* |
| miRNA family | miR3954 |
Expression profile
| Tissue specificity index | ovule: 0.0075; fiber: 0.065; shoot apical: 0.1922; ovule and fiber: 0.0825; cotyledon: 0.0008; cotton boll: 0.002; callus: 0.0027; leaf: 0.0963; anthers: 0.121; hypocotyls: 0.4295; seedlings: 0.0005 | Tau: 0.8672 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH42965, CoLNCGH09596, CoLNCGH09597, CoLNCGH12632, CoLNCGH12633, CoLNCGH12634, CoLNCGH20928, CoLNCGH20927, CoLNCGH20924, CoLNCGH20923 |
|---|
| Target CDS | Gh_A02G011500.1, Gh_D02G012500.1, Gh_A02G074300.1, Gh_A02G183500.1, Gh_D03G028800.1, Gh_D12G095500.1, Gh_D02G077400.1, Gh_D01G194200.1, Gh_A05G069500.1, Gh_A05G069500.2 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |