| CoNCRAtlas ID | CoMIRGH005 |
|---|---|
| Mature miRNA sequence | UGUGUUCUCAGGUCGCCCCUG |
| Locus | A02:1638078-1638177(+) |
| Alignment | Displayed Location: A02:1638068-1638183 Strand: + AGAGGUGGAGGAAUCCAACCGGGUCGACCUUAGAACACAUGUGAUUGUUUUUCGAUUUCGAUAUGGUUUAUUUCAUGUGUUCUCAGGUCGCCCCUGUCGGGUUUCCCUUCAUCAUU (((((.((((((((((.((.(((.((((((.((((((((((.(((......(((....)))........))).)))))))))).)))))).))).)).)))))))(((((((.((( ...........................................................................UGUGUUCUCAGGUCGCCCCUG.................... ghi-miR398a ....................GGGUCGACCUUAGAACACAUG........................................................................... ghi-miR398a* |
| miRNA family | miR398 |
Expression profile
| Tissue specificity index | ovule: 0.0074; fiber: 0.0224; shoot apical: 0.0003; ovule and fiber: 0.0024; cotyledon: 0.3721; cotton boll: 0.0135; callus: 0.4326; leaf: 0.0326; anthers: 0.0032; seedlings: 0.1136 | Tau: 0.8688 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH51136, CoLNCGH51134, CoLNCGH51135, CoLNCGH51134, CoLNCGH51135, CoLNCGH51136, CoLNCGH51134, CoLNCGH51135, CoLNCGH51134, CoLNCGH51135 |
|---|
| Target CDS | Gh_A11G255000.1, Gh_D11G258500.1, Gh_A04G133600.1, Gh_D04G173000.1, Gh_D02G173200.1, Gh_D09G078900.2, Gh_A09G084700.3, Gh_A09G084700.2, Gh_A09G084700.1, Gh_D09G078900.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |