| CoNCRAtlas ID | CoMIRGH003 |
|---|---|
| Mature miRNA sequence | CGCUAUCCAUCCUGAGUUUCA |
| Locus | A01:115871483-115871607(+) |
| Alignment | Displayed Location: A01:115871487-115871624 Strand: + UCAGUAUGGAAGAAUCUGUUAAGCUCAGGAGGGAUAGCGCCAUGGAUGAUCCAUCUUUCAAGCUUUCAUGCAUGUAUUUUAUUUGAUCCUCAUAUAGCGCUAUCCAUCCUGAGUUUCAUCGGUUCUUCUUGCUUGCUG ..((((.(((((((((.((.((((((((((.(((((((((.(((((.((((.......((.((......)).))..........)))).)).))).))))))))).)))))))))).)).))))))))))))).(((( .................................................................................................CGCUAUCCAUCCUGAGUUUCA.................... ghi-miR390a ....................AAGCUCAGGAGGGAUAGCGCC................................................................................................. ghi-miR390a* |
| miRNA family | miR390 |
Expression profile
| Tissue specificity index | ovule: 0.1092; fiber: 0.1417; shoot apical: 0.0243; ovule and fiber: 0.1453; cotyledon: 0.0005; cotton boll: 0.0457; callus: 0.4397; leaf: 0.0868; anthers: 0.0034; hypocotyls: 0.0022; seedlings: 0.0011 | Tau: 0.8726 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGH36101, CoLNCGH33835, CoLNCGH33834, CoLNCGH33833, CoLNCGH33832, CoLNCGH10511, CoLNCGH33831, CoLNCGH10510, CoLNCGH33830, CoLNCGH10509 |
|---|
| Target CDS | Gh_A10G130900.1, Gh_D10G143800.1, Gh_A11G274300.1, Gh_D11G273000.1, Gh_D07G206900.1, Gh_A11G349100.1, Gh_A11G283800.1, Gh_D11G283600.1, Gh_A11G274300.1, Gh_D11G273000.1 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29481843 | MicroRNA-target gene responses to root knot nematode (Meloidogyne incognita) infection in cotton (Gossypium hirsutum L.) |