CoNCRAtlas


CoNCRAtlas ID CoMIRGH001
Mature miRNA sequence CUUUUUAGGGAUCAUGGCACC
Locus A01:112003601-112003767(-)
Alignment 
Displayed Location: A01:112003597-112003746 Strand: -
UGAAGAGCAAGAGCACACGAUGCUAUGGUCGCUAAAAAGCGAGCUUAUGUGGAGACUUGAAUCCAUGACCUCUAGUCUCCCAAUCGGUUCAAGUCUCCCAAUAUGCUUACUUUUUAGGGAUCAUGGCACCAUCUGCUCUUGCUUUCCAGC
((.((((((((((((...(.((((((((((.((((((((.((((.(((..(((((((((((((.(((((.....))).....)).)))))))))))))..))).)))).)))))))).)))))))))).)...)))))))))))).))..
.............................................................................................................CUUUUUAGGGAUCAUGGCACC.................... ghi-miR1425
....................UGCUAUGGUCGCUAAAAAGCG............................................................................................................. ghi-miR1425*
miRNA family miR1425

Expression profile

Tissue specificity indexovule: 0.0163; fiber: 0.2108; shoot apical: 0.1424; ovule and fiber: 0.0173; cotyledon: 0.0638; cotton boll: 0.0116; callus: 0.0259; leaf: 0.3654; anthers: 0.0759; hypocotyls: 0.0206; seedlings: 0.0501 | Tau: 0.8263

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGH40956, CoLNCGH21161, CoLNCGH34365, CoLNCGH28687, CoLNCGH07033, CoLNCGH11225, CoLNCGH34989, CoLNCGH34988, CoLNCGH31740, CoLNCGH36680
Target CDS Gh_A07G103400.1, Gh_D07G100500.1, Gh_A03G002900.1, Gh_A03G003000.1, Gh_D03G195700.1, Gh_A07G129500.1, Gh_D07G128200.1, Gh_A13G252800.1, Gh_D13G257500.1, Gh_A03G061600.1
sORF
Reference
PMID Title
No references available