| CoNCRAtlas ID | CoMIRGB109 |
|---|---|
| Mature miRNA sequence | UGCCAAAGGAGAGUUGCCCUG |
| Locus | D12:58465993-58466071(+) |
| Alignment | Displayed Location: CM018226.1:58465974-58466091 Strand: + UAAUAAGCAAACCAGUCUUAGGGCACCUCUCACUUAGGCAGGUAAUAGUGCAUAUUAUGGCAUUUGUUCCCAUGACUUGCCAAAGGAGAGUUGCCCUGUGACUGCUUCAGCUUAGCAU ((((((((....(((((.(((((((.(((((.(((.(((((((...(((((........)))))..........))))))).)))))))).))))))).))))).....))))).... .............................................................................UGCCAAAGGAGAGUUGCCCUG.................... gba-miR399b ....................GGGCACCUCUCACUUAGGCAGG............................................................................ gba-miR399b* |
| miRNA family | miR399 |
Expression profile
| Tissue specificity index | root: 0.2102; shoot apical: 0.1769; fiber: 0.6128 | Tau: 0.8421 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGB16573, CoLNCGB15778, CoLNCGB00492, CoLNCGB19945, CoLNCGB19946, CoLNCGB19944, CoLNCGB01506, CoLNCGB01610, CoLNCGB01611, CoLNCGB01612 |
|---|
| Target CDS | GB_A06G1911, GB_D06G1981, GB_D10G1496, GB_D05G0697, GB_A06G0504, GB_D06G0498, GB_A09G1237, GB_D09G1080, GB_A11G3147, GB_D11G3145 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 29626311 | Exploration of miRNAs and target genes of cytoplasmic male sterility line in cotton during flower bud development |