| CoNCRAtlas ID |
CoMIRGB088 |
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| Mature miRNA sequence |
GGAAGGUUUGGAGGAGAUUGA |
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| Locus |
D08:39935462-39935694(-) |
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| Alignment |
Displayed Location: CM018222.1:39935597-39935714 Strand: -
UUAGAAGGAAUCGGUUGCUCAAUCUCCCUCAAACGCUUCCAGCAAUAUGCUACACACUACUCCCCAGCAGUACUGCUGGAAGGUUUGGAGGAGAUUGAACAAAACAUGCCUUGAUGAU
....((((......(((.(((((((((.((((((.(((((((((...((((..............))))....))))))))))))))).))))))))).)))......))))......
.............................................................................GGAAGGUUUGGAGGAGAUUGA.................... gba-miR1449
....................AAUCUCCCUCAAACGCUUCCAG............................................................................ gba-miR1449*
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| miRNA family |
miR1449 |
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Expression profile
| Tissue specificity index | Ovule: 0.0093; root: 0.4904; shoot apical: 0.3637; fiber: 0.1184; all tissues: 0.0183 | Tau: 0.7402
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| Tissue |
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| Developmental Stage |
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| Treatment |
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Additional Information
Overlapping Elements:
| sORF |
>CoMIRGB088:70-108 ORF1_CoMIRGB088:69:107
TTGAGGGAGACTGAGCAACCAATTCCTTGTAAGCTTTAA
>CoMIRGB088:151-231 ORF2_CoMIRGB088:150:230
TTGTTCAATCTCCTCCAAACCTTCCAGCAGTACTGCTGGGGAGTAGTGTGTAGCATATTGCTGGAAGCGT
TTGAGGGAGAT
>CoMIRGB088:80-196 ORF3_CoMIRGB088:79:195
CTGAGCAACCAATTCCTTGTAAGCTTTAAAAAATATATATATCATCATCATCATCATCATCAAGGCATGT
TTTGTTCAATCTCCTCCAAACCTTCCAGCAGTACTGCTGGGGAGTAG
>CoMIRGB088:c142-2 ORF4_CoMIRGB088:141:1
TTGATGATGATGATGATGATGATATATATATTTTTTAAAGCTTACAAGGAATTGGTTGCTCAGTCTCCCT
CAAACGCTTCCGGCAATATGCTACACACTACCCCCCAGCAGTACTGCTGGAAGGTTTGGAGGAGAGTGAA
C
>CoMIRGB088:c180-139 ORF5_CoMIRGB088:179:138
CTGCTGGAAGGTTTGGAGGAGATTGAACAAAACATGCCTTGA
>CoMIRGB088:c87-4 ORF6_CoMIRGB088:86:3
TTGCTCAGTCTCCCTCAAACGCTTCCGGCAATATGCTACACACTACCCCCCAGCAGTACTGCTGGAAGGT
TTGGAGGAGAGTGA
>CoMIRGB088:c206-105 ORF7_CoMIRGB088:205:104
ATGCTACACACTACTCCCCAGCAGTACTGCTGGAAGGTTTGGAGGAGATTGAACAAAACATGCCTTGATG
ATGATGATGATGATGATATATATATTTTTTAA
>ORF1_CoMIRGB088:69:107 unnamed protein product
MRETEQPIPCKL
>ORF2_CoMIRGB088:150:230 unnamed protein product, partial
MFNLLQTFQQYCWGVVCSILLEAFEGD
>ORF3_CoMIRGB088:79:195 unnamed protein product
MSNQFLVSFKKYIYHHHHHHQGMFCSISSKPSSSTAGE
>ORF4_CoMIRGB088:141:1 unnamed protein product, partial
MMMMMMMIYIFFKAYKELVAQSPSNASGNMLHTTPQQYCWKVWRRVN
>ORF5_CoMIRGB088:179:138 unnamed protein product
MLEGLEEIEQNMP
>ORF6_CoMIRGB088:86:3 unnamed protein product
MLSLPQTLPAICYTLPPSSTAGRFGGE
>ORF7_CoMIRGB088:205:104 unnamed protein product
MLHTTPQQYCWKVWRRLNKTCLDDDDDDDIYIF
Check Peptide activity
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