| CoNCRAtlas ID |
CoMIRGB081 |
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| Mature miRNA sequence |
UGACAACGAGAGAGAGCACGU |
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| Locus |
D07:11512493-11512581(+) |
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| Alignment |
Displayed Location: CM018221.1:11512478-11512597 Strand: +
AGAUAUGAUACAUUAUCAAUUGACAACGAGAGAGAGCACGUUUGUAGCCAUUCAUACAUGGUCAUGGAUGCAUACAAGCGUGCUCUCUAUCGGUGUCAUGUGAUUUGUACAUGUCUCUCC
(((((((.((((..((((..(((((.(((.((((((((((((((((..(((((((........)))))))..)))))))))))))))).))).)))))..)))).)))))))))))....
....................UGACAACGAGAGAGAGCACGU............................................................................... gba-miR535c
...............................................................................GUGCUCUCUAUCGGUGUCAUG.................... gba-miR535c*
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| miRNA family |
miR535 |
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Expression profile
| Tissue specificity index | Ovule: 0.0561; root: 0.1219; shoot apical: 0.7577; fiber: 0.025; all tissues: 0.0393 | Tau: 0.9201
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| Tissue |
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| Developmental Stage |
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| Treatment |
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Additional Information
Overlapping Elements:
| sORF |
>CoMIRGB081:4-87 ORF1_CoMIRGB081:3:86
TTGACAACGAGAGAGAGCACGTTTGTAGCCATTCATACATGGTCATGGATGCATACAAGCGTGCTCTCTA
TCGGTGTCATGTGA
>CoMIRGB081:42-86 ORF2_CoMIRGB081:41:85
ATGGTCATGGATGCATACAAGCGTGCTCTCTATCGGTGTCATGTG
>CoMIRGB081:c61-2 ORF3_CoMIRGB081:60:1
TTGTATGCATCCATGACCATGTATGAATGGCTACAAACGTGCTCTCTCTCGTTGTCAATT
>CoMIRGB081:c39-1 ORF4_CoMIRGB081:38:0
ATGAATGGCTACAAACGTGCTCTCTCTCGTTGTCAATTG
>CoMIRGB081:c83-36 ORF5_CoMIRGB081:82:35
ATGACACCGATAGAGAGCACGCTTGTATGCATCCATGACCATGTATGA
>CoMIRGB081:c35-3 ORF6_CoMIRGB081:34:2
ATGGCTACAAACGTGCTCTCTCTCGTTGTCAAT
>ORF1_CoMIRGB081:3:86 unnamed protein product
MTTRESTFVAIHTWSWMHTSVLSIGVM
>ORF2_CoMIRGB081:41:85 unnamed protein product, partial
MVMDAYKRALYRCHV
>ORF3_CoMIRGB081:60:1 unnamed protein product, partial
MYASMTMYEWLQTCSLSLSI
>ORF4_CoMIRGB081:38:0 unnamed protein product, partial
MNGYKRALSRCQL
>ORF5_CoMIRGB081:82:35 unnamed protein product
MTPIESTLVCIHDHV
>ORF6_CoMIRGB081:34:2 unnamed protein product, partial
MATNVLSLVVN
Check Peptide activity
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