CoNCRAtlas


CoNCRAtlas ID CoMIRGB072
Mature miRNA sequence UGAUUGAGCCGUGCCAAUAUC
Locus D04:14930491-14930575(-)
Alignment 
Displayed Location: CM018218.1:14930479-14930595 Strand: -
UAAAAUAGUUGAAAAUUUGAUGUUGGCACGGUUCAAUCGGAUCAAAUCUCUCAGUGACUGGCUGAGUCCUUUAAUCUGAUUGAGCCGUGCCAAUAUCAGAGUUAGUCAGUUUAUCAC
((((....((((...(((((((((((((((((((((((((((.(((...((((((.....))))))...))).))))))))))))))))))))))))))).....))))))))))).
............................................................................UGAUUGAGCCGUGCCAAUAUC.................... gba-miR171c
....................UGUUGGCACGGUUCAAUCGGA............................................................................ gba-miR171c*
miRNA family miR171

Expression profile

Tissue specificity indexroot: 0.9515; shoot apical: 0.0132; fiber: 0.0067; all tissues: 0.0286 | Tau: 0.9873
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
D041493049814930577-Mutator_TIR_transposon
Target lncRNA CoLNCGB14907, CoLNCGB10413, CoLNCGB10412, CoLNCGB10411, CoLNCGB10410, CoLNCGB10409, CoLNCGB10408, CoLNCGB10407, CoLNCGB10406, CoLNCGB10405
Target CDS GB_A12G1158, GB_D12G1139, GB_A08G2079, GB_D08G2069, GB_A12G2500, GB_D12G2499, GB_A03G0141, GB_D03G1853, GB_A12G1159, GB_A03G2138
sORF
Reference
PMID Title
0NA