| CoNCRAtlas ID |
CoMIRGB069 |
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| Mature miRNA sequence |
ACUUUUGAACUGGAUUUGCCGA |
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| Locus |
D03:51856070-51856158(+) |
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| Alignment |
Displayed Location: CM018217.1:51856055-51856175 Strand: +
CUGUCUUAGUUUGCGUCUUGACUUUUGAACUGGAUUUGCCGACUUGAACUGCGUUGUUGAUGGUUUCCAAAACCCGAGCCUGCAAAUCCAGUCAAAAGUUAAAACCGGGCUGAGAUUUACG
(((((((((((((.((.(((((((((((.((((((((((.(.(((((((......)))...(((((...))))))))).).))))))))))))))))))))).))))))))))))).....
....................ACUUUUGAACUGGAUUUGCCGA............................................................................... gba-miR2949a
................................................................................UGCAAAUCCAGUCAAAAGUUA.................... gba-miR2949a*
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| miRNA family |
miR2949 |
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Expression profile
| Tissue specificity index | Ovule: 0.2748; root: 0.424; shoot apical: 0.1453; fiber: 0.099; all tissues: 0.0569 | Tau: 0.6604
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| Tissue |
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| Developmental Stage |
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| Treatment |
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Additional Information
Overlapping Elements:
| sORF |
>CoMIRGB069:28-87 ORF1_CoMIRGB069:27:86
TTGAACTGCGTTGTTGATGGTTTCCAAAACCCGAGCCTGCAAATCCAGTCAAAAGTTAAA
>CoMIRGB069:38-88 ORF2_CoMIRGB069:37:87
TTGTTGATGGTTTCCAAAACCCGAGCCTGCAAATCCAGTCAAAAGTTAAAA
>CoMIRGB069:9-44 ORF3_CoMIRGB069:8:43
TTGAACTGGATTTGCCGACTTGAACTGCGTTGTTGA
>CoMIRGB069:c79-2 ORF4_CoMIRGB069:78:1
TTGACTGGATTTGCAGGCTCGGGTTTTGGAAACCATCAACAACGCAGTTCAAGTCGGCAAATCCAGTTCA
AAAGTCAA
>CoMIRGB069:c75-1 ORF5_CoMIRGB069:74:0
CTGGATTTGCAGGCTCGGGTTTTGGAAACCATCAACAACGCAGTTCAAGTCGGCAAATCCAGTTCAAAAG
TCAAG
>ORF1_CoMIRGB069:27:86 unnamed protein product, partial
MNCVVDGFQNPSLQIQSKVK
>ORF2_CoMIRGB069:37:87 unnamed protein product, partial
MLMVSKTRACKSSQKLK
>ORF3_CoMIRGB069:8:43 unnamed protein product
MNWICRLELRC
>ORF4_CoMIRGB069:78:1 unnamed protein product, partial
MTGFAGSGFGNHQQRSSSRQIQFKSQ
>ORF5_CoMIRGB069:74:0 unnamed protein product, partial
MDLQARVLETINNAVQVGKSSSKVK
Check Peptide activity
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