| CoNCRAtlas ID | CoMIRGB065 |
|---|---|
| Mature miRNA sequence | AGAAUCUUGAUGAUGCUGCAU |
| Locus | D03:47814218-47814328(-) |
| Alignment | Displayed Location: CM018217.1:47814211-47814326 Strand: - GACAGUCGUUGUUUGCAGGAGUAGCAUCAUCAAGAUUCACAUGCAAAUUACAUUGCUAAAAGUUCUUUGAAACUGAGAAUCUUGAUGAUGCUGCAUCGGCAAUAAACGACUACACA ...(((((((..((((.((.((((((((((((((((((.((..((((..((.((....)).))..))))....)).)))))))))))))))))).)).))))..)))))))..... ...........................................................................AGAAUCUUGAUGAUGCUGCAU.................... gba-miR172c ....................GUAGCAUCAUCAAGAUUCACA........................................................................... gba-miR172c* |
| miRNA family | miR172 |
Expression profile
| Tissue specificity index | root: 0.282; shoot apical: 0.7179; all tissues: 0.0001 | Tau: 0.9018 |
|---|
Additional Information
Overlapping Elements:
| Target lncRNA | CoLNCGB26613, CoLNCGB26614, CoLNCGB26615, CoLNCGB07552, CoLNCGB07553, CoLNCGB18259, CoLNCGB18880, CoLNCGB26613, CoLNCGB26614, CoLNCGB26615 |
|---|
| Target CDS | GB_D03G1543, GB_D05G0997, GB_A05G1021, GB_A08G2997, GB_D08G0016, GB_A10G2447, GB_D10G2402, GB_A01G2449, GB_D01G2522, GB_A03G0446 |
|---|
| sORF |
|---|
| Reference | |
|---|---|
| PMID | Title |
| 25131375 | Small RNA and degradome profiling reveals a role for miRNAs and their targets in the developing fibers of Gossypium barbadense |