| CoNCRAtlas ID |
CoMIRGB052 |
|---|
| Mature miRNA sequence |
UGAAUCUUGAUGAUGCUGCAU |
|---|
| Locus |
A13:107561765-107561852(-) |
|---|
| Alignment |
Displayed Location: CM018214.1:107561747-107561872 Strand: -
UACAGUCAGUGUUUGCAAAUGCGGCAUCGUCAAGAUUCAUAGAAAAUUUUCCUAAGAGCCUGUUUGGAUGCCUUGAAAGUUUUCUUGAAUCUUGAUGAUGCUGCAUCUGCAAUUAUAUUGGCUAAC
...((((((((((((((.(((((((((((((((((((((.(((((((((((.......((.....)).......)))))))))))))))))))))))))))))))).)))))..)))))))))...
.....................................................................................UGAAUCUUGAUGAUGCUGCAU.................... gba-miR172b
....................GCGGCAUCGUCAAGAUUCAUA..................................................................................... gba-miR172b*
|
|---|
| miRNA family |
miR172 |
|---|
Expression profile
| Tissue specificity index | root: 0.7573; shoot apical: 0.24; all tissues: 0.0027 | Tau: 0.9199
|
|---|
| Tissue |
|
|---|
| Developmental Stage |
|
|---|
| Treatment |
|
|---|
Additional Information
Overlapping Elements:
| sORF |
>CoMIRGB052:2-85 ORF1_CoMIRGB052:1:84
ATGCAGCATCATCAAGATTCAAGAAAACTTTCAAGGCATCCAAACAGGCTCTTAGGAAAATTTTCTATGA
ATCTTGACGATGCC
>CoMIRGB052:c48-13 ORF2_CoMIRGB052:47:12
CTGTTTGGATGCCTTGAAAGTTTTCTTGAATCTTGA
>CoMIRGB052:c44-3 ORF3_CoMIRGB052:43:2
TTGGATGCCTTGAAAGTTTTCTTGAATCTTGATGATGCTGCA
>ORF1_CoMIRGB052:1:84 unnamed protein product, partial
MQHHQDSRKLSRHPNRLLGKFSMNLDDA
>ORF2_CoMIRGB052:47:12 unnamed protein product
MFGCLESFLES
>ORF3_CoMIRGB052:43:2 unnamed protein product, partial
MDALKVFLNLDDAA
Check Peptide activity
|
Reference
| PMID |
Title |
|---|
| 25131375 | Small RNA and degradome profiling reveals a role for miRNAs and their targets in the developing fibers of Gossypium barbadense |