CoNCRAtlas


CoNCRAtlas ID CoMIRGB048
Mature miRNA sequence UGCCAAAGGAGAGUUGCCCUG
Locus A12:97911813-97911886(+)
Alignment 
Displayed Location: CM018213.1:97911794-97911905 Strand: +
UAAUAAGCAAACCAGUCUUAGGGCAUCUCUCACUUAGGCAGGUAAUGGUGCAUAUAUUUGUUCCCAUGACUUGCCAAAGGAGAGUUGCCCUGUGACUGCUUCAGCUUAGCAU
.............((((.(((((((.(((((.(((.(((((((.((((.(((......)))..)))).))))))).)))))))).))))))).)))))))))))))))))))
.......................................................................UGCCAAAGGAGAGUUGCCCUG.................... gba-miR399a
....................GGGCAUCUCUCACUUAGGCAGG...................................................................... gba-miR399a*
miRNA family miR399

Expression profile

Tissue specificity indexroot: 0.2177; shoot apical: 0.3096; fiber: 0.4727 | Tau: 0.7211
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements: No overlap molecule
Target lncRNA CoLNCGB16573, CoLNCGB00492, CoLNCGB19945, CoLNCGB19946, CoLNCGB19944, CoLNCGB01506, CoLNCGB01610, CoLNCGB01611, CoLNCGB01612, CoLNCGB15778
Target CDS GB_A06G1911, GB_D06G1981, GB_D10G1496, GB_D08G0573, GB_D05G0697, GB_A06G0504, GB_D06G0498, GB_A09G1237, GB_D09G1080, GB_A11G3147
sORF
Reference
PMID Title
29626311Exploration of miRNAs and target genes of cytoplasmic male sterility line in cotton during flower bud development