| CoNCRAtlas ID |
CoMIRGB043 |
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| Mature miRNA sequence |
UUCCCGAGGCCACCCAUUCCAG |
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| Locus |
A12:12264054-12264189(+) |
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| Alignment |
Displayed Location: CM018213.1:12264063-12264189 Strand: +
UUGAGCUACUGGAAAUUACAGGAAUGGGGUCUUUGGGAUGAACCAUUCGAAAGCUUUUCAUCGUUUUAGUCAUAAAUUGAAGUUCUUCCCGAGGCCACCCAUUCCAGUGAUUUCCAGAGGCUUAUCC
.((((((.(((((((((((.(((((((((.((((((((.((((..(((((((((........))))..........))))))))).)))))))).).)))))))).))))))))))).)))))))))
.....................................................................................UUCCCGAGGCCACCCAUUCCAG.................... gba-miR1183a
....................GGAAUGGGGUCUUUGGGAUGA...................................................................................... gba-miR1183a*
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| miRNA family |
miR1183 |
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Expression profile
| Tissue specificity index | Ovule: 0.2188; root: 0.1003; shoot apical: 0.1692; fiber: 0.0624; all tissues: 0.4493 | Tau: 0.6935
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| Tissue |
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| Developmental Stage |
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| Treatment |
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Additional Information
Overlapping Elements:
| sORF |
>CoMIRGB043:46-135 ORF1_CoMIRGB043:45:134
ATGAACCATTCGAAAGCTTTTCATCGTTTTAGTCATAAATTGAAGTTCTTCCCGAGGCCACCCATTCCAG
TGATTTCCAGAGGCTTATCC
>CoMIRGB043:17-49 ORF2_CoMIRGB043:16:48
CTGGAAATTACAGGAATGGGGTCTTTGGGATGA
>CoMIRGB043:9-77 ORF3_CoMIRGB043:8:76
TTGAGCTACTGGAAATTACAGGAATGGGGTCTTTGGGATGAACCATTCGAAAGCTTTTCATCGTTTTAG
>CoMIRGB043:c81-1 ORF4_CoMIRGB043:80:0
ATGACTAAAACGATGAAAAGCTTTCGAATGGTTCATCCCAAAGACCCCATTCCTGTAATTTCCAGTAGCT
CAATTTCCCTT
>CoMIRGB043:c125-78 ORF5_CoMIRGB043:124:77
CTGGAAATCACTGGAATGGGTGGCCTCGGGAAGAACTTCAATTTATGA
>CoMIRGB043:c115-74 ORF6_CoMIRGB043:114:73
CTGGAATGGGTGGCCTCGGGAAGAACTTCAATTTATGACTAA
>ORF1_CoMIRGB043:45:134 unnamed protein product, partial
MNHSKAFHRFSHKLKFFPRPPIPVISRGLS
>ORF2_CoMIRGB043:16:48 unnamed protein product
MEITGMGSLG
>ORF3_CoMIRGB043:8:76 unnamed protein product
MSYWKLQEWGLWDEPFESFSSF
>ORF4_CoMIRGB043:80:0 unnamed protein product, partial
MTKTMKSFRMVHPKDPIPVISSSSISL
>ORF5_CoMIRGB043:124:77 unnamed protein product
MEITGMGGLGKNFNL
>ORF6_CoMIRGB043:114:73 unnamed protein product
MEWVASGRTSIYD
Check Peptide activity
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