CoNCRAtlas


CoNCRAtlas ID CoMIRGB001
Mature miRNA sequence UGUGUUCUCAGGUCGCCCCUG
Locus A02:1543273-1543354(+)
Alignment 
Displayed Location: CM018203.1:1543259-1543374 Strand: +
AGAGGUGGAGGAAUCCAACCGGGUCGACCUUAGAACACAUGUGAUUGUUUUUCGAUUUCGAUAUGGUUUAUUUCAUGUGUUCUCAGGUCGCCCCUGUCGGGUUUCCCUUCAUCAUU
(((((.((((((((((.((.(((.((((((.((((((((((.(((......(((....)))........))).)))))))))).)))))).))).)).)))))))(((((((.(((
...........................................................................UGUGUUCUCAGGUCGCCCCUG.................... gba-miR398a
....................GGGUCGACCUUAGAACACAUG........................................................................... gba-miR398a*
miRNA family miR398

Expression profile

Tissue specificity indexOvule: 0.1213; root: 0.0384; shoot apical: 0.0019; fiber: 0.0463; all tissues: 0.7921 | Tau: 0.9344
Tissue
Developmental Stage
Treatment

Additional Information


Overlapping Elements:
ChromosomeStartEndStrandMolecule
A0215429301544522+CoLNCGB07880
A0215432341544522+CoLNCGB07881
Target lncRNA CoLNCGB07880, CoLNCGB07881, CoLNCGB19931, CoLNCGB07880, CoLNCGB07881, CoLNCGB27351, CoLNCGB08451, CoLNCGB08459, CoLNCGB25815, CoLNCGB25816
Target CDS GB_A11G2607, GB_D11G2621, GB_A06G1240, GB_A06G1241, GB_D12G2275, GB_A04G1381, GB_D04G1758, GB_A03G2195, GB_D02G2343, GB_A09G0972
sORF
Reference
PMID Title
0NA