lncRNA Details

Basic Information

CoNCRAtlas IDCoLNCGB28479
TranscriptMSTRG.84298.1
Length258 bp
GC Content43.58%
LocusML706597.1:9249-9506 (-)
Directionsense
Typegenic
Exon Number1
Coding ProbabilityCNCI score: -0.018432 | CPC2 non-coding probability: 0.988759 | PLncPRO non-coding probability: 0.717
>MSTRG.84298.1 CoLNCGB28479
TGGAATGGTCACAATGTTCACTCACACACTTTCTACACTCTTTTTCGAGATTTTGAAGCT
GTTTATCCATATAGAACAAAGAATTATATCCTAAAATTTGATATCAATTACTTTCACTTG
AAATTGATAGAGGCTGCGCGAACGCAAGCCCCCACTGCCACAAATTATGACGTAGGCTCT
CCCTCTTGGGGAGACCTTAAAGCAGCACCCCTCCCAAGTGCAATGGAGGTCACTGCTCTA
GGCCATGAGTCTTCCTG

Not available

Expression Profile

Tissue Specificity Index: Anther: 0.1823; Fiber: 0.0466; Hypocotyl: 0.068; Leaf: 0.3463; Ovule: 0.0089; Petal: 0.0346; Root: 0.1574; Stem: 0.0089; Stigma: 0.147 | Tau: 0.8548

Overlapping Elements

No overlap molecule

Targeted By

gba-miR1377, gba-miR1394

sORFs

>MSTRG.84298.1:118-255 ORF1_MSTRG.84298.1:117:254
TTGAAATTGATAGAGGCTGCGCGAACGCAAGCCCCCACTGCCACAAATTATGACGTAGGCTCTCCCTCTT
GGGGAGACCTTAAAGCAGCACCCCTCCCAAGTGCAATGGAGGTCACTGCTCTAGGCCATGAGTCTTCC
>MSTRG.84298.1:5-94 ORF2_MSTRG.84298.1:4:93
ATGGTCACAATGTTCACTCACACACTTTCTACACTCTTTTTCGAGATTTTGAAGCTGTTTATCCATATAG
AACAAAGAATTATATCCTAA
>MSTRG.84298.1:134-175 ORF3_MSTRG.84298.1:133:174
CTGCGCGAACGCAAGCCCCCACTGCCACAAATTATGACGTAG
>MSTRG.84298.1:c163-104 ORF4_MSTRG.84298.1:162:103
TTGTGGCAGTGGGGGCTTGCGTTCGCGCAGCCTCTATCAATTTCAAGTGAAAGTAATTGA
>MSTRG.84298.1:c79-2 ORF5_MSTRG.84298.1:78:1
TTGTTCTATATGGATAAACAGCTTCAAAATCTCGAAAAAGAGTGTAGAAAGTGTGTGAGTGAACATTGTG
ACCATTCC
>MSTRG.84298.1:c147-91 ORF6_MSTRG.84298.1:146:90
TTGCGTTCGCGCAGCCTCTATCAATTTCAAGTGAAAGTAATTGATATCAAATTTTAG

>ORF1_MSTRG.84298.1:117:254 unnamed protein product, partial
MKLIEAARTQAPTATNYDVGSPSWGDLKAAPLPSAMEVTALGHESS
>ORF2_MSTRG.84298.1:4:93 unnamed protein product
MVTMFTHTLSTLFFEILKLFIHIEQRIIS
>ORF3_MSTRG.84298.1:133:174 unnamed protein product
MRERKPPLPQIMT
>ORF4_MSTRG.84298.1:162:103 unnamed protein product
MWQWGLAFAQPLSISSESN
>ORF5_MSTRG.84298.1:78:1 unnamed protein product, partial
MFYMDKQLQNLEKECRKCVSEHCDHS
>ORF6_MSTRG.84298.1:146:90 unnamed protein product
MRSRSLYQFQVKVIDIKF

Check Peptide Activity