lncRNA Details

Basic Information

CoNCRAtlas IDCoLNCGB22589
TranscriptMSTRG.70044.1
Length345 bp
GC Content43.60%
LocusD10:7377173-7377517 (-)
Directionsense
Typegenic
Exon Number1
Coding ProbabilityCNCI score: -0.0872448 | CPC2 non-coding probability: 0.93271 | PLncPRO non-coding probability: 0.612
>MSTRG.70044.1 CoLNCGB22589
ATGCTTGATAGTCGAAACCAACTGATATTTGCCTTTGACCCTACTGAAGCTGTAGAGGAT
CGTTTCCTGCTGGTATCAACTAAAGCATGGAATGGTCACAATGTTCACTCACACACTTTC
TACACTCTTTTTCGAGATTTTGAAGCTGTTTATCCATATAGAACAAAGAATTATATCCTA
AAATTTGATATCAATTACTTTCACTTGAAATTGATAGGGGCTGCGCGAACGCAAGCCCCC
ACTGCCACAAATTATGACGTAGGCTCTCCCTCTTGGGGAGACCTTAAAGCAGCACCCCTC
CCAAGTGCAATGGAGGTCACTGCTCTAGGCCATGAGTCTTCCTG

Not available

Expression Profile

Tissue Specificity Index: Anther: 0.17; Fiber: 0.0491; Hypocotyl: 0.0689; Leaf: 0.3469; Ovule: 0.0114; Petal: 0.0414; Root: 0.1663; Stem: 0.0048; Stigma: 0.1413 | Tau: 0.8552

Overlapping Elements

No overlap molecule

Targeted By

gba-miR1377, gba-miR1394

sORFs

>MSTRG.70044.1:1-342 ORF1_MSTRG.70044.1:0:341
ATGCTTGATAGTCGAAACCAACTGATATTTGCCTTTGACCCTACTGAAGCTGTAGAGGATCGTTTCCTGC
TGGTATCAACTAAAGCATGGAATGGTCACAATGTTCACTCACACACTTTCTACACTCTTTTTCGAGATTT
TGAAGCTGTTTATCCATATAGAACAAAGAATTATATCCTAAAATTTGATATCAATTACTTTCACTTGAAA
TTGATAGGGGCTGCGCGAACGCAAGCCCCCACTGCCACAAATTATGACGTAGGCTCTCCCTCTTGGGGAG
ACCTTAAAGCAGCACCCCTCCCAAGTGCAATGGAGGTCACTGCTCTAGGCCATGAGTCTTCC
>MSTRG.70044.1:92-181 ORF2_MSTRG.70044.1:91:180
ATGGTCACAATGTTCACTCACACACTTTCTACACTCTTTTTCGAGATTTTGAAGCTGTTTATCCATATAG
AACAAAGAATTATATCCTAA
>MSTRG.70044.1:221-262 ORF3_MSTRG.70044.1:220:261
CTGCGCGAACGCAAGCCCCCACTGCCACAAATTATGACGTAG
>MSTRG.70044.1:87-143 ORF4_MSTRG.70044.1:86:142
ATGGAATGGTCACAATGTTCACTCACACACTTTCTACACTCTTTTTCGAGATTTTGA
>MSTRG.70044.1:c250-191 ORF5_MSTRG.70044.1:249:190
TTGTGGCAGTGGGGGCTTGCGTTCGCGCAGCCCCTATCAATTTCAAGTGAAAGTAATTGA
>MSTRG.70044.1:c166-80 ORF6_MSTRG.70044.1:165:79
TTGTTCTATATGGATAAACAGCTTCAAAATCTCGAAAAAGAGTGTAGAAAGTGTGTGAGTGAACATTGTG
ACCATTCCATGCTTTAG
>MSTRG.70044.1:c79-41 ORF7_MSTRG.70044.1:78:40
TTGATACCAGCAGGAAACGATCCTCTACAGCTTCAGTAG
>MSTRG.70044.1:c234-178 ORF8_MSTRG.70044.1:233:177
TTGCGTTCGCGCAGCCCCTATCAATTTCAAGTGAAAGTAATTGATATCAAATTTTAG

>ORF1_MSTRG.70044.1:0:341 unnamed protein product, partial
MLDSRNQLIFAFDPTEAVEDRFLLVSTKAWNGHNVHSHTFYTLFRDFEAVYPYRTKNYILKFDINYFHLK
LIGAARTQAPTATNYDVGSPSWGDLKAAPLPSAMEVTALGHESS
>ORF2_MSTRG.70044.1:91:180 unnamed protein product
MVTMFTHTLSTLFFEILKLFIHIEQRIIS
>ORF3_MSTRG.70044.1:220:261 unnamed protein product
MRERKPPLPQIMT
>ORF4_MSTRG.70044.1:86:142 unnamed protein product
MEWSQCSLTHFLHSFSRF
>ORF5_MSTRG.70044.1:249:190 unnamed protein product
MWQWGLAFAQPLSISSESN
>ORF6_MSTRG.70044.1:165:79 unnamed protein product
MFYMDKQLQNLEKECRKCVSEHCDHSML
>ORF7_MSTRG.70044.1:78:40 unnamed protein product
MIPAGNDPLQLQ
>ORF8_MSTRG.70044.1:233:177 unnamed protein product
MRSRSPYQFQVKVIDIKF

Check Peptide Activity