lncRNA Details

Basic Information

CoNCRAtlas IDCoLNCGB22268
TranscriptMSTRG.69261.1
Length429 bp
GC Content41.36%
LocusD09:50548808-50549236 (+)
Directionantisense
Typegenic
Exon Number2
Coding ProbabilityCNCI score: -0.0004096 | CPC2 non-coding probability: 0.975321 | PLncPRO non-coding probability: 0.96
>MSTRG.69261.1 CoLNCGB22268
CTTAAAGCTGCACGGAATCCACTACGAAATTCCTGAATAACTGAGGTCGCTTCCATCCCC
TGTACATCAGTTGTTTCAGTATCTTCTGGCGGGGCAGATCCTAATTTCCCACATGTAATA
TCATGTAACAAGTTGGAGGAGTAACTAGAACTATTGAGAAGTAACTCAACCAATTTAGGA
TACATTACTTGATCATTTGAACGTTTTCCTATAGGTGGTCGACGCGGTACACCAGAGTCT
ATAGCCACAATGTAGGAATCAGAATGGAACGACTCACTGAATGAAGAACCAACTAGGCTC
ATGTCACTAGATCTTGGTGATTCTATAATATCAGATAGATCAGAGCTCTGTGATGTCAAT
CCTGGACTATGAGTGCTTAATCTGCAGTCAACTGAAGATGCCCTTCGTTCCTTTTGAATA
GCTCTAAT

Not available

Expression Profile

Tissue Specificity Index: Anther: 0.0209; Bract: 0.0593; Fiber: 0.0929; Hypocotyl: 0.036; Leaf: 0.089; Ovule: 0.1439; Petal: 0.077; Root: 0.1214; Stem: 0.2564; Stigma: 0.0556; Torus: 0.0476 | Tau: 0.7769

Overlapping Elements

No overlap molecule

Targeted By

gba-miR2950b, gba-miR2950a

sORFs

>MSTRG.69261.1:154-192 ORF1_MSTRG.69261.1:153:191
TTGAGAAGTAACTCAACCAATTTAGGATACATTACTTGA
>MSTRG.69261.1:277-372 ORF2_MSTRG.69261.1:276:371
CTGAATGAAGAACCAACTAGGCTCATGTCACTAGATCTTGGTGATTCTATAATATCAGATAGATCAGAGC
TCTGTGATGTCAATCCTGGACTATGA
>MSTRG.69261.1:382-417 ORF3_MSTRG.69261.1:381:416
CTGCAGTCAACTGAAGATGCCCTTCGTTCCTTTTGA
>MSTRG.69261.1:8-40 ORF4_MSTRG.69261.1:7:39
CTGCACGGAATCCACTACGAAATTCCTGAATAA
>MSTRG.69261.1:41-118 ORF5_MSTRG.69261.1:40:117
CTGAGGTCGCTTCCATCCCCTGTACATCAGTTGTTTCAGTATCTTCTGGCGGGGCAGATCCTAATTTCCC
ACATGTAA
>MSTRG.69261.1:353-421 ORF6_MSTRG.69261.1:352:420
ATGTCAATCCTGGACTATGAGTGCTTAATCTGCAGTCAACTGAAGATGCCCTTCGTTCCTTTTGAATAG
>MSTRG.69261.1:60-104 ORF7_MSTRG.69261.1:59:103
CTGTACATCAGTTGTTTCAGTATCTTCTGGCGGGGCAGATCCTAA
>MSTRG.69261.1:c359-3 ORF8_MSTRG.69261.1:358:2
TTGACATCACAGAGCTCTGATCTATCTGATATTATAGAATCACCAAGATCTAGTGACATGAGCCTAGTTG
GTTCTTCATTCAGTGAGTCGTTCCATTCTGATTCCTACATTGTGGCTATAGACTCTGGTGTACCGCGTCG
ACCACCTATAGGAAAACGTTCAAATGATCAAGTAATGTATCCTAAATTGGTTGAGTTACTTCTCAATAGT
TCTAGTTACTCCTCCAACTTGTTACATGATATTACATGTGGGAAATTAGGATCTGCCCCGCCAGAAGATA
CTGAAACAACTGATGTACAGGGGATGGAAGCGACCTCAGTTATTCAGGAATTTCGTAGTGGATTCCGTGC
AGCTTTA
>MSTRG.69261.1:c292-239 ORF9_MSTRG.69261.1:291:238
TTGGTTCTTCATTCAGTGAGTCGTTCCATTCTGATTCCTACATTGTGGCTATAG
>MSTRG.69261.1:c169-101 ORF10_MSTRG.69261.1:168:100
TTGAGTTACTTCTCAATAGTTCTAGTTACTCCTCCAACTTGTTACATGATATTACATGTGGGAAATTAG
>MSTRG.69261.1:c97-2 ORF11_MSTRG.69261.1:96:1
CTGCCCCGCCAGAAGATACTGAAACAACTGATGTACAGGGGATGGAAGCGACCTCAGTTATTCAGGAATT
TCGTAGTGGATTCCGTGCAGCTTTAA
>MSTRG.69261.1:c114-76 ORF12_MSTRG.69261.1:113:75
ATGTGGGAAATTAGGATCTGCCCCGCCAGAAGATACTGA

>ORF1_MSTRG.69261.1:153:191 unnamed protein product
MRSNSTNLGYIT
>ORF2_MSTRG.69261.1:276:371 unnamed protein product
MNEEPTRLMSLDLGDSIISDRSELCDVNPGL
>ORF3_MSTRG.69261.1:381:416 unnamed protein product
MQSTEDALRSF
>ORF4_MSTRG.69261.1:7:39 unnamed protein product
MHGIHYEIPE
>ORF5_MSTRG.69261.1:40:117 unnamed protein product
MRSLPSPVHQLFQYLLAGQILISHM
>ORF6_MSTRG.69261.1:352:420 unnamed protein product
MSILDYECLICSQLKMPFVPFE
>ORF7_MSTRG.69261.1:59:103 unnamed protein product
MYISCFSIFWRGRS
>ORF8_MSTRG.69261.1:358:2 unnamed protein product, partial
MTSQSSDLSDIIESPRSSDMSLVGSSFSESFHSDSYIVAIDSGVPRRPPIGKRSNDQVMYPKLVELLLNS
SSYSSNLLHDITCGKLGSAPPEDTETTDVQGMEATSVIQEFRSGFRAAL
>ORF9_MSTRG.69261.1:291:238 unnamed protein product
MVLHSVSRSILIPTLWL
>ORF10_MSTRG.69261.1:168:100 unnamed protein product
MSYFSIVLVTPPTCYMILHVGN
>ORF11_MSTRG.69261.1:96:1 unnamed protein product
MPRQKILKQLMYRGWKRPQLFRNFVVDSVQL
>ORF12_MSTRG.69261.1:113:75 unnamed protein product
MWEIRICPARRY

Check Peptide Activity