lncRNA Details

Basic Information

CoNCRAtlas IDCoLNCGB20673
TranscriptMSTRG.6523.1
Length273 bp
GC Content37.87%
LocusA03:22683643-22683915 (+)
Directionsense
Typegenic
Exon Number1
Coding ProbabilityCNCI score: -0.049152 | CPC2 non-coding probability: 0.964818 | PLncPRO non-coding probability: 0.657
>MSTRG.6523.1 CoLNCGB20673
TGGTGGTTTCACTATATCCTGCATGCTCCCAAACTAACTTGTTCAAAGGAAGAAGAGAAA
AGGTCTATCATGAGGGAGAAGAACCTGTCAACTTAACCAAGGATGATTGCCTGGAATCCA
AACAAGAAATTAAACTTGGTGAAACTTCTTGTGAGCTACAGGCAAGTCATCCTTGGTTAC
CAAACAAGATTCTTATCTTCATGGAAGACCTCTCTTCCATTTCATTGATTCCTTGTATTC
CATATATATATATACCAAAATGCACGTACATT

Not available

Expression Profile

Tissue Specificity Index: Fiber: 0.8126; Hypocotyl: 0.1874 | Tau: 0.9823

Overlapping Elements

No overlap molecule

Targeted By

gba-miR2594

sORFs

>MSTRG.6523.1:19-96 ORF1_MSTRG.6523.1:18:95
CTGCATGCTCCCAAACTAACTTGTTCAAAGGAAGAAGAGAAAAGGTCTATCATGAGGGAGAAGAACCTGT
CAACTTAA
>MSTRG.6523.1:103-228 ORF2_MSTRG.6523.1:102:227
ATGATTGCCTGGAATCCAAACAAGAAATTAAACTTGGTGAAACTTCTTGTGAGCTACAGGCAAGTCATCC
TTGGTTACCAAACAAGATTCTTATCTTCATGGAAGACCTCTCTTCCATTTCATTGA
>MSTRG.6523.1:173-271 ORF3_MSTRG.6523.1:172:270
TTGGTTACCAAACAAGATTCTTATCTTCATGGAAGACCTCTCTTCCATTTCATTGATTCCTTGTATTCCA
TATATATATATACCAAAATGCACGTACAT
>MSTRG.6523.1:39-272 ORF4_MSTRG.6523.1:38:271
TTGTTCAAAGGAAGAAGAGAAAAGGTCTATCATGAGGGAGAAGAACCTGTCAACTTAACCAAGGATGATT
GCCTGGAATCCAAACAAGAAATTAAACTTGGTGAAACTTCTTGTGAGCTACAGGCAAGTCATCCTTGGTT
ACCAAACAAGATTCTTATCTTCATGGAAGACCTCTCTTCCATTTCATTGATTCCTTGTATTCCATATATA
TATATACCAAAATGCACGTACATT
>MSTRG.6523.1:c125-93 ORF5_MSTRG.6523.1:124:92
TTGTTTGGATTCCAGGCAATCATCCTTGGTTAA
>MSTRG.6523.1:c71-12 ORF6_MSTRG.6523.1:70:11
ATGATAGACCTTTTCTCTTCTTCCTTTGAACAAGTTAGTTTGGGAGCATGCAGGATATAG
>MSTRG.6523.1:c271-167 ORF7_MSTRG.6523.1:270:166
ATGTACGTGCATTTTGGTATATATATATATGGAATACAAGGAATCAATGAAATGGAAGAGAGGTCTTCCA
TGAAGATAAGAATCTTGTTTGGTAACCAAGGATGA
>MSTRG.6523.1:c121-68 ORF8_MSTRG.6523.1:120:67
TTGGATTCCAGGCAATCATCCTTGGTTAAGTTGACAGGTTCTTCTCCCTCATGA
>MSTRG.6523.1:c46-2 ORF9_MSTRG.6523.1:45:1
TTGAACAAGTTAGTTTGGGAGCATGCAGGATATAGTGAAACCACC
>MSTRG.6523.1:c258-199 ORF10_MSTRG.6523.1:257:198
TTGGTATATATATATATGGAATACAAGGAATCAATGAAATGGAAGAGAGGTCTTCCATGA
>MSTRG.6523.1:c183-130 ORF11_MSTRG.6523.1:182:129
TTGGTAACCAAGGATGACTTGCCTGTAGCTCACAAGAAGTTTCACCAAGTTTAA

>ORF1_MSTRG.6523.1:18:95 unnamed protein product
MHAPKLTCSKEEEKRSIMREKNLST
>ORF2_MSTRG.6523.1:102:227 unnamed protein product
MIAWNPNKKLNLVKLLVSYRQVILGYQTRFLSSWKTSLPFH
>ORF3_MSTRG.6523.1:172:270 unnamed protein product, partial
MVTKQDSYLHGRPLFHFIDSLYSIYIYTKMHVH
>ORF4_MSTRG.6523.1:38:271 unnamed protein product, partial
MFKGRREKVYHEGEEPVNLTKDDCLESKQEIKLGETSCELQASHPWLPNKILIFMEDLSSISLIPCIPYI
YIPKCTYI
>ORF5_MSTRG.6523.1:124:92 unnamed protein product
MFGFQAIILG
>ORF6_MSTRG.6523.1:70:11 unnamed protein product
MIDLFSSSFEQVSLGACRI
>ORF7_MSTRG.6523.1:270:166 unnamed protein product, partial
MYVHFGIYIYGIQGINEMEERSSMKIRILFGNQG
>ORF8_MSTRG.6523.1:120:67 unnamed protein product
MDSRQSSLVKLTGSSPS
>ORF9_MSTRG.6523.1:45:1 unnamed protein product, partial
MNKLVWEHAGYSETT
>ORF10_MSTRG.6523.1:257:198 unnamed protein product
MVYIYMEYKESMKWKRGLP
>ORF11_MSTRG.6523.1:182:129 unnamed protein product
MVTKDDLPVAHKKFHQV

Check Peptide Activity