lncRNA Details

Basic Information

CoNCRAtlas IDCoLNCGB20640
TranscriptMSTRG.65089.1
Length1838 bp
GC Content31.14%
LocusD08:52308362-52310199 (-)
Directionsense
Typeintergenic
Exon Number2
Coding ProbabilityCNCI score: -0.090112 | CPC2 non-coding probability: 0.963751 | PLncPRO non-coding probability: 0.705
>MSTRG.65089.1 CoLNCGB20640
GTTTCAATCGTCTTCTTTCTTCTTCATTTGGCAAATCGAATACCATTTTCAACACCTTGG
AGCTTCGGTTCTTCTATTTCCTTGCATGGGTATGTTATTTTAGTCCGTTTTTAGTAATTT
TTATGATTTTGAGATCGTTGCAATTAGATCCAGCTAACCCGTACATCCGTTTTTGAAATT
ATTAAATATTTTAAAAATGCGCCTTGGATGAGTTTGAGTTATTTGTGAAAAATTGTGATA
GATTACTAAGCTTGGTTGTTTAATAGGATTATTTTGTAAAATAATTTTTGTTGATTTTCA
TATTAAATGACTAAATTGTTTAAATGTTAAAATCTCAAGGTAATATTGTGAAATTATGGT
GTATAGAGGGCTGTATAAGGTCCTTAAATATTCGGCTGGAATGGGTTATGTTCAAATAAG
TTTAAATTTGTAAATTCGGGTTTAGGGACTAAATTAATATAAATGTAAAAGTTTAGGGAA
AATATGTAAATAATGAAAATTTAAGGGTCATATGCATAAAATTGAGTTGGGATGTGTATT
TGATAAGATTGAATTTAATTATTATAGATCAAGGTTTGATTCGTACGAAGGATAATCGTG
GAAAAACTAAATTAATGGATTAGTCGCCGACCTTGTTTTTGCAACCGTTTTCGTCTAGGC
AAGTTCATATGATATTGTTTTGAGTACTTTTAGTATGTTATTATTTTGAATTATACAATT
TGATGATATTGGTCATATTTGAAATATTGTGATTGAATTGGTGAGAAATGGATTGAATTG
GAAATTGTTATATGGTTATGTGTATCGAGTCCGGATGAACATAGGATAGGATACAATTGA
CATGCCAATAGGTTATATTACACGATGTACGGGTCTGACTTGAGATGAGATGATGATTCT
TGATTTATTCCTGTTCACTGAATATACCGGAGTCTAGCATTTGTTGCAGACTATTGTGTT
ATATTTATAGTGTTCTGGCGTGTTATTGGGAGCGGATGTAAAGCCTTCGAGCTTGACACT
TGGTGCTGAGGTGTGTTTTGGGAGCGAAGTTAGCCTACAGGCTAGGCACTTGGTGCCAAG
GCTTGTTCTCAGTTGGTTAGGCTCATTAGAGCGTTTTGGTGTGTTTCAGTGGTTAATCGC
GTACCTATATATGTTATATCGTTCATCGGGCATATTTAAAATAGTTAAATGACTTGTGTA
TGGAATTGTATAAATAATTGCTTGATTTTTTATAGTATATCGTAAATTGATATTGATTGA
ATTCGTATGATTGAACGGATTATGTAACTTGTATATTTGTATAACTCACCATTGACTGAT
TGTGGTTGGCAAGACTAATGTCTATTGACATTGTTATAAAATAATTATTTTTGTTTATTC
GGTAAGTTTTATCGTTTTAACCTGTGAACTTACTAAGCATATTAAAGCTTACTTATGTTA
TTTTCCTGTTTCATTGTAGATAATTTTTTTCCGGAATTAAGCGATTGGATCAACACGAAT
ATCACACTATCTAGATTCTTTTTGGTAGATTTTGAAAATGATTAATTTTGGTATATGTGG
CATGTAATAGGAGTATCTCGTATATGTTTTAAGTACTTACTACAAGTGGTATTTTCTATA
CTTGTGTGATAAATATATGCTTTAGTTAATAATGTGCTAATTCATGGTTTGGTATGAAAT
TTAAATTTAGTACGGAACTTGTCATGTAATAGGTGTTGTGTAAATATTTTGAATACAAGT
TACTTGTGGTGCTTGTTATACTTGAAAGATGTTGCCTTAGATTGATTTTTGGTGCTTGTA
TATGTATGCTTTTAAGGTTTTGTAAAGGCTCATAAGT

Not available

Expression Profile

Tissue Specificity Index: Anther: 0.1175; Hypocotyl: 0.1403; Leaf: 0.0358; Ovule: 0.0032; Petal: 0.0067; Root: 0.5908; Sepal: 0.0426; Stem: 0.0404; Stigma: 0.0061; Torus: 0.0166 | Tau: 0.9467

Overlapping Elements

No overlap molecule

Targeted By

gba-miRN2

sORFs

>MSTRG.65089.1:28-114 ORF1_MSTRG.65089.1:27:113
TTGGCAAATCGAATACCATTTTCAACACCTTGGAGCTTCGGTTCTTCTATTTCCTTGCATGGGTATGTTA
TTTTAGTCCGTTTTTAG
>MSTRG.65089.1:778-840 ORF2_MSTRG.65089.1:777:839
TTGGAAATTGTTATATGGTTATGTGTATCGAGTCCGGATGAACATAGGATAGGATACAATTGA
>MSTRG.65089.1:1093-1179 ORF3_MSTRG.65089.1:1092:1178
TTGGTTAGGCTCATTAGAGCGTTTTGGTGTGTTTCAGTGGTTAATCGCGTACCTATATATGTTATATCGT
TCATCGGGCATATTTAA
>MSTRG.65089.1:1189-1245 ORF4_MSTRG.65089.1:1188:1244
ATGACTTGTGTATGGAATTGTATAAATAATTGCTTGATTTTTTATAGTATATCGTAA
>MSTRG.65089.1:1297-1338 ORF5_MSTRG.65089.1:1296:1337
TTGTATAACTCACCATTGACTGATTGTGGTTGGCAAGACTAA
>MSTRG.65089.1:1435-1545 ORF6_MSTRG.65089.1:1434:1544
ATGTTATTTTCCTGTTTCATTGTAGATAATTTTTTTCCGGAATTAAGCGATTGGATCAACACGAATATCA
CACTATCTAGATTCTTTTTGGTAGATTTTGAAAATGATTAA
>MSTRG.65089.1:1555-1629 ORF7_MSTRG.65089.1:1554:1628
ATGTGGCATGTAATAGGAGTATCTCGTATATGTTTTAAGTACTTACTACAAGTGGTATTTTCTATACTTG
TGTGA
>MSTRG.65089.1:1699-1785 ORF8_MSTRG.65089.1:1698:1784
TTGTCATGTAATAGGTGTTGTGTAAATATTTTGAATACAAGTTACTTGTGGTGCTTGTTATACTTGAAAG
ATGTTGCCTTAGATTGA
>MSTRG.65089.1:173-211 ORF9_MSTRG.65089.1:172:210
TTGAAATTATTAAATATTTTAAAAATGCGCCTTGGATGA
>MSTRG.65089.1:356-433 ORF10_MSTRG.65089.1:355:432
ATGGTGTATAGAGGGCTGTATAAGGTCCTTAAATATTCGGCTGGAATGGGTTATGTTCAAATAAGTTTAA
ATTTGTAA
>MSTRG.65089.1:512-595 ORF11_MSTRG.65089.1:511:594
ATGCATAAAATTGAGTTGGGATGTGTATTTGATAAGATTGAATTTAATTATTATAGATCAAGGTTTGATT
CGTACGAAGGATAA
>MSTRG.65089.1:758-829 ORF12_MSTRG.65089.1:757:828
TTGGTGAGAAATGGATTGAATTGGAAATTGTTATATGGTTATGTGTATCGAGTCCGGATGAACATAGGAT
AG
>MSTRG.65089.1:842-883 ORF13_MSTRG.65089.1:841:882
ATGCCAATAGGTTATATTACACGATGTACGGGTCTGACTTGA
>MSTRG.65089.1:890-937 ORF14_MSTRG.65089.1:889:936
ATGATGATTCTTGATTTATTCCTGTTCACTGAATATACCGGAGTCTAG
>MSTRG.65089.1:986-1192 ORF15_MSTRG.65089.1:985:1191
TTGGGAGCGGATGTAAAGCCTTCGAGCTTGACACTTGGTGCTGAGGTGTGTTTTGGGAGCGAAGTTAGCC
TACAGGCTAGGCACTTGGTGCCAAGGCTTGTTCTCAGTTGGTTAGGCTCATTAGAGCGTTTTGGTGTGTT
TCAGTGGTTAATCGCGTACCTATATATGTTATATCGTTCATCGGGCATATTTAAAATAGTTAAATGA
>MSTRG.65089.1:1271-1315 ORF16_MSTRG.65089.1:1270:1314
TTGAACGGATTATGTAACTTGTATATTTGTATAACTCACCATTGA
>MSTRG.65089.1:1316-1348 ORF17_MSTRG.65089.1:1315:1347
CTGATTGTGGTTGGCAAGACTAATGTCTATTGA
>MSTRG.65089.1:1532-1567 ORF18_MSTRG.65089.1:1531:1566
TTGAAAATGATTAATTTTGGTATATGTGGCATGTAA
>MSTRG.65089.1:57-176 ORF19_MSTRG.65089.1:56:175
TTGGAGCTTCGGTTCTTCTATTTCCTTGCATGGGTATGTTATTTTAGTCCGTTTTTAGTAATTTTTATGA
TTTTGAGATCGTTGCAATTAGATCCAGCTAACCCGTACATCCGTTTTTGA
>MSTRG.65089.1:204-263 ORF20_MSTRG.65089.1:203:262
TTGGATGAGTTTGAGTTATTTGTGAAAAATTGTGATAGATTACTAAGCTTGGTTGTTTAA
>MSTRG.65089.1:324-419 ORF21_MSTRG.65089.1:323:418
ATGTTAAAATCTCAAGGTAATATTGTGAAATTATGGTGTATAGAGGGCTGTATAAGGTCCTTAAATATTC
GGCTGGAATGGGTTATGTTCAAATAA
>MSTRG.65089.1:522-623 ORF22_MSTRG.65089.1:521:622
TTGAGTTGGGATGTGTATTTGATAAGATTGAATTTAATTATTATAGATCAAGGTTTGATTCGTACGAAGG
ATAATCGTGGAAAAACTAAATTAATGGATTAG
>MSTRG.65089.1:633-683 ORF23_MSTRG.65089.1:632:682
TTGTTTTTGCAACCGTTTTCGTCTAGGCAAGTTCATATGATATTGTTTTGA
>MSTRG.65089.1:720-752 ORF24_MSTRG.65089.1:719:751
TTGATGATATTGGTCATATTTGAAATATTGTGA
>MSTRG.65089.1:900-1001 ORF25_MSTRG.65089.1:899:1000
TTGATTTATTCCTGTTCACTGAATATACCGGAGTCTAGCATTTGTTGCAGACTATTGTGTTATATTTATA
GTGTTCTGGCGTGTTATTGGGAGCGGATGTAA
>MSTRG.65089.1:1020-1100 ORF26_MSTRG.65089.1:1019:1099
TTGGTGCTGAGGTGTGTTTTGGGAGCGAAGTTAGCCTACAGGCTAGGCACTTGGTGCCAAGGCTTGTTCT
CAGTTGGTTAG
>MSTRG.65089.1:1320-1364 ORF27_MSTRG.65089.1:1319:1363
TTGTGGTTGGCAAGACTAATGTCTATTGACATTGTTATAAAATAA
>MSTRG.65089.1:1548-1592 ORF28_MSTRG.65089.1:1547:1591
TTGGTATATGTGGCATGTAATAGGAGTATCTCGTATATGTTTTAA
>MSTRG.65089.1:1674-1709 ORF29_MSTRG.65089.1:1673:1708
ATGAAATTTAAATTTAGTACGGAACTTGTCATGTAA
>MSTRG.65089.1:1716-1835 ORF30_MSTRG.65089.1:1715:1834
TTGTGTAAATATTTTGAATACAAGTTACTTGTGGTGCTTGTTATACTTGAAAGATGTTGCCTTAGATTGA
TTTTTGGTGCTTGTATATGTATGCTTTTAAGGTTTTGTAAAGGCTCATAA
>MSTRG.65089.1:c1738-1646 ORF31_MSTRG.65089.1:1737:1645
TTGTATTCAAAATATTTACACAACACCTATTACATGACAAGTTCCGTACTAAATTTAAATTTCATACCAA
ACCATGAATTAGCACATTATTAA
>MSTRG.65089.1:c1351-1280 ORF32_MSTRG.65089.1:1350:1279
ATGTCAATAGACATTAGTCTTGCCAACCACAATCAGTCAATGGTGAGTTATACAAATATACAAGTTACAT
AA
>MSTRG.65089.1:c949-905 ORF33_MSTRG.65089.1:948:904
CTGCAACAAATGCTAGACTCCGGTATATTCAGTGAACAGGAATAA
>MSTRG.65089.1:c736-701 ORF34_MSTRG.65089.1:735:700
ATGACCAATATCATCAAATTGTATAATTCAAAATAA
>MSTRG.65089.1:c517-473 ORF35_MSTRG.65089.1:516:472
ATGCATATGACCCTTAAATTTTCATTATTTACATATTTTCCCTAA
>MSTRG.65089.1:c415-335 ORF36_MSTRG.65089.1:414:334
TTGAACATAACCCATTCCAGCCGAATATTTAAGGACCTTATACAGCCCTCTATACACCATAATTTCACAA
TATTACCTTGA
>MSTRG.65089.1:c301-269 ORF37_MSTRG.65089.1:300:268
ATGAAAATCAACAAAAATTATTTTACAAAATAA
>MSTRG.65089.1:c166-95 ORF38_MSTRG.65089.1:165:94
ATGTACGGGTTAGCTGGATCTAATTGCAACGATCTCAAAATCATAAAAATTACTAAAAACGGACTAAAAT
AA
>MSTRG.65089.1:c52-2 ORF39_MSTRG.65089.1:51:1
TTGAAAATGGTATTCGATTTGCCAAATGAAGAAGAAAGAAGACGATTGAAA
>MSTRG.65089.1:c1833-1777 ORF40_MSTRG.65089.1:1832:1776
ATGAGCCTTTACAAAACCTTAAAAGCATACATATACAAGCACCAAAAATCAATCTAA
>MSTRG.65089.1:c1563-1507 ORF41_MSTRG.65089.1:1562:1506
ATGCCACATATACCAAAATTAATCATTTTCAAAATCTACCAAAAAGAATCTAGATAG
>MSTRG.65089.1:c1173-1126 ORF42_MSTRG.65089.1:1172:1125
ATGCCCGATGAACGATATAACATATATAGGTACGCGATTAACCACTGA
>MSTRG.65089.1:c1092-934 ORF43_MSTRG.65089.1:1091:933
CTGAGAACAAGCCTTGGCACCAAGTGCCTAGCCTGTAGGCTAACTTCGCTCCCAAAACACACCTCAGCAC
CAAGTGTCAAGCTCGAAGGCTTTACATCCGCTCCCAATAACACGCCAGAACACTATAAATATAACACAAT
AGTCTGCAACAAATGCTAG
>MSTRG.65089.1:c843-796 ORF44_MSTRG.65089.1:842:795
ATGTCAATTGTATCCTATCCTATGTTCATCCGGACTCGATACACATAA
>MSTRG.65089.1:c153-121 ORF45_MSTRG.65089.1:152:120
CTGGATCTAATTGCAACGATCTCAAAATCATAA
>MSTRG.65089.1:c87-49 ORF46_MSTRG.65089.1:86:48
ATGCAAGGAAATAGAAGAACCGAAGCTCCAAGGTGTTGA
>MSTRG.65089.1:c1493-1422 ORF47_MSTRG.65089.1:1492:1421
TTGATCCAATCGCTTAATTCCGGAAAAAAATTATCTACAATGAAACAGGAAAATAACATAAGTAAGCTTT
AA
>MSTRG.65089.1:c1166-1089 ORF48_MSTRG.65089.1:1165:1088
ATGAACGATATAACATATATAGGTACGCGATTAACCACTGAAACACACCAAAACGCTCTAATGAGCCTAA
CCAACTGA
>MSTRG.65089.1:c848-711 ORF49_MSTRG.65089.1:847:710
TTGGCATGTCAATTGTATCCTATCCTATGTTCATCCGGACTCGATACACATAACCATATAACAATTTCCA
ATTCAATCCATTTCTCACCAATTCAATCACAATATTTCAAATATGACCAATATCATCAAATTGTATAA
>MSTRG.65089.1:c668-612 ORF50_MSTRG.65089.1:667:611
ATGAACTTGCCTAGACGAAAACGGTTGCAAAAACAAGGTCGGCGACTAATCCATTAA
>MSTRG.65089.1:c143-111 ORF51_MSTRG.65089.1:142:110
TTGCAACGATCTCAAAATCATAAAAATTACTAA

>ORF1_MSTRG.65089.1:27:113 unnamed protein product
MANRIPFSTPWSFGSSISLHGYVILVRF
>ORF2_MSTRG.65089.1:777:839 unnamed protein product
MEIVIWLCVSSPDEHRIGYN
>ORF3_MSTRG.65089.1:1092:1178 unnamed protein product
MVRLIRAFWCVSVVNRVPIYVISFIGHI
>ORF4_MSTRG.65089.1:1188:1244 unnamed protein product
MTCVWNCINNCLIFYSIS
>ORF5_MSTRG.65089.1:1296:1337 unnamed protein product
MYNSPLTDCGWQD
>ORF6_MSTRG.65089.1:1434:1544 unnamed protein product
MLFSCFIVDNFFPELSDWINTNITLSRFFLVDFEND
>ORF7_MSTRG.65089.1:1554:1628 unnamed protein product
MWHVIGVSRICFKYLLQVVFSILV
>ORF8_MSTRG.65089.1:1698:1784 unnamed protein product
MSCNRCCVNILNTSYLWCLLYLKDVALD
>ORF9_MSTRG.65089.1:172:210 unnamed protein product
MKLLNILKMRLG
>ORF10_MSTRG.65089.1:355:432 unnamed protein product
MVYRGLYKVLKYSAGMGYVQISLNL
>ORF11_MSTRG.65089.1:511:594 unnamed protein product
MHKIELGCVFDKIEFNYYRSRFDSYEG
>ORF12_MSTRG.65089.1:757:828 unnamed protein product
MVRNGLNWKLLYGYVYRVRMNIG
>ORF13_MSTRG.65089.1:841:882 unnamed protein product
MPIGYITRCTGLT
>ORF14_MSTRG.65089.1:889:936 unnamed protein product
MMILDLFLFTEYTGV
>ORF15_MSTRG.65089.1:985:1191 unnamed protein product
MGADVKPSSLTLGAEVCFGSEVSLQARHLVPRLVLSWLGSLERFGVFQWLIAYLYMLYRSSGIFKIVK
>ORF16_MSTRG.65089.1:1270:1314 unnamed protein product
MNGLCNLYICITHH
>ORF17_MSTRG.65089.1:1315:1347 unnamed protein product
MIVVGKTNVY
>ORF18_MSTRG.65089.1:1531:1566 unnamed protein product
MKMINFGICGM
>ORF19_MSTRG.65089.1:56:175 unnamed protein product
MELRFFYFLAWVCYFSPFLVIFMILRSLQLDPANPYIRF
>ORF20_MSTRG.65089.1:203:262 unnamed protein product
MDEFELFVKNCDRLLSLVV
>ORF21_MSTRG.65089.1:323:418 unnamed protein product
MLKSQGNIVKLWCIEGCIRSLNIRLEWVMFK
>ORF22_MSTRG.65089.1:521:622 unnamed protein product
MSWDVYLIRLNLIIIDQGLIRTKDNRGKTKLMD
>ORF23_MSTRG.65089.1:632:682 unnamed protein product
MFLQPFSSRQVHMILF
>ORF24_MSTRG.65089.1:719:751 unnamed protein product
MMILVIFEIL
>ORF25_MSTRG.65089.1:899:1000 unnamed protein product
MIYSCSLNIPESSICCRLLCYIYSVLACYWERM
>ORF26_MSTRG.65089.1:1019:1099 unnamed protein product
MVLRCVLGAKLAYRLGTWCQGLFSVG
>ORF27_MSTRG.65089.1:1319:1363 unnamed protein product
MWLARLMSIDIVIK
>ORF28_MSTRG.65089.1:1547:1591 unnamed protein product
MVYVACNRSISYMF
>ORF29_MSTRG.65089.1:1673:1708 unnamed protein product
MKFKFSTELVM
>ORF30_MSTRG.65089.1:1715:1834 unnamed protein product
MCKYFEYKLLVVLVILERCCLRLIFGACICMLLRFCKGS
>ORF31_MSTRG.65089.1:1737:1645 unnamed protein product
MYSKYLHNTYYMTSSVLNLNFIPNHELAHY
>ORF32_MSTRG.65089.1:1350:1279 unnamed protein product
MSIDISLANHNQSMVSYTNIQVT
>ORF33_MSTRG.65089.1:948:904 unnamed protein product
MQQMLDSGIFSEQE
>ORF34_MSTRG.65089.1:735:700 unnamed protein product
MTNIIKLYNSK
>ORF35_MSTRG.65089.1:516:472 unnamed protein product
MHMTLKFSLFTYFP
>ORF36_MSTRG.65089.1:414:334 unnamed protein product
MNITHSSRIFKDLIQPSIHHNFTILP
>ORF37_MSTRG.65089.1:300:268 unnamed protein product
MKINKNYFTK
>ORF38_MSTRG.65089.1:165:94 unnamed protein product
MYGLAGSNCNDLKIIKITKNGLK
>ORF39_MSTRG.65089.1:51:1 unnamed protein product, partial
MKMVFDLPNEEERRRLK
>ORF40_MSTRG.65089.1:1832:1776 unnamed protein product
MSLYKTLKAYIYKHQKSI
>ORF41_MSTRG.65089.1:1562:1506 unnamed protein product
MPHIPKLIIFKIYQKESR
>ORF42_MSTRG.65089.1:1172:1125 unnamed protein product
MPDERYNIYRYAINH
>ORF43_MSTRG.65089.1:1091:933 unnamed protein product
MRTSLGTKCLACRLTSLPKHTSAPSVKLEGFTSAPNNTPEHYKYNTIVCNKC
>ORF44_MSTRG.65089.1:842:795 unnamed protein product
MSIVSYPMFIRTRYT
>ORF45_MSTRG.65089.1:152:120 unnamed protein product
MDLIATISKS
>ORF46_MSTRG.65089.1:86:48 unnamed protein product
MQGNRRTEAPRC
>ORF47_MSTRG.65089.1:1492:1421 unnamed protein product
MIQSLNSGKKLSTMKQENNISKL
>ORF48_MSTRG.65089.1:1165:1088 unnamed protein product
MNDITYIGTRLTTETHQNALMSLTN
>ORF49_MSTRG.65089.1:847:710 unnamed protein product
MACQLYPILCSSGLDTHNHITISNSIHFSPIQSQYFKYDQYHQIV
>ORF50_MSTRG.65089.1:667:611 unnamed protein product
MNLPRRKRLQKQGRRLIH
>ORF51_MSTRG.65089.1:142:110 unnamed protein product
MQRSQNHKNY

Check Peptide Activity