lncRNA Details

Basic Information

CoNCRAtlas IDCoLNCGB18895
TranscriptMSTRG.60684.1
Length524 bp
GC Content31.93%
LocusD07:7201073-7201596 (+)
Directionantisense
Typeintergenic
Exon Number2
Coding ProbabilityCNCI score: -0.0004096 | CPC2 non-coding probability: 0.968179 | PLncPRO non-coding probability: 0.935
>MSTRG.60684.1 CoLNCGB18895
TTAGATAGATTCAAACCCCATCCTTAATAACTAAACCTAAAACCTAATTCTTATTCCAAT
ACTCATTCAGCTCTCAAACTTATAATTTGTCCATCCCCTGTCACTGTATTTTTCACAATC
ACGATCATTTAGGGTTTCAAATTACCTTCTGTTTAATGGTCTTATTCCTTCATCCATTCC
ACCACTAGTCCGTCTATCATCCATTCGTCTGACCATCTCCTTTCGAGGTTTGTATTTTAG
CCTCTCTCTTTTTTAATTGTAAATAAATGATGAAGAAGAAGGACTTATGTGGGTTTTTTT
TTTGTTTTTTTTGAAATGATTCTCTAAAATAAAAAATAATATTGTTATGAATAAGGGAAG
AAGATGAAAATAGAATGAAGAGAAGGAGTATGAAGGTTGGAAGGAGATCATGGTTTCTTG
GAGAAAATTTAGAGATTTAGAACGAGAATGAAAATGAGAGATTATCTGGTTGTTTCATAC
TTCTATTTGCTGATGTGAATGACTAGCAATTAATTATTTCAGG

Not available

Expression Profile

Tissue Specificity Index: Anther: 0.1503; Fiber: 0.3535; Hypocotyl: 0.2953; Ovule: 0.2009 | Tau: 0.8593

Overlapping Elements

No overlap molecule

Targeted By

gba-miR482d, gba-miR482i

sORFs

>MSTRG.60684.1:397-432 ORF1_MSTRG.60684.1:396:431
TTGGAAGGAGATCATGGTTTCTTGGAGAAAATTTAG
>MSTRG.60684.1:448-498 ORF2_MSTRG.60684.1:447:497
ATGAAAATGAGAGATTATCTGGTTGTTTCATACTTCTATTTGCTGATGTGA
>MSTRG.60684.1:98-256 ORF3_MSTRG.60684.1:97:255
CTGTCACTGTATTTTTCACAATCACGATCATTTAGGGTTTCAAATTACCTTCTGTTTAATGGTCTTATTC
CTTCATCCATTCCACCACTAGTCCGTCTATCATCCATTCGTCTGACCATCTCCTTTCGAGGTTTGTATTT
TAGCCTCTCTCTTTTTTAA
>MSTRG.60684.1:287-319 ORF4_MSTRG.60684.1:286:318
ATGTGGGTTTTTTTTTTGTTTTTTTTGAAATGA
>MSTRG.60684.1:410-451 ORF5_MSTRG.60684.1:409:450
ATGGTTTCTTGGAGAAAATTTAGAGATTTAGAACGAGAATGA
>MSTRG.60684.1:87-188 ORF6_MSTRG.60684.1:86:187
TTGTCCATCCCCTGTCACTGTATTTTTCACAATCACGATCATTTAGGGTTTCAAATTACCTTCTGTTTAA
TGGTCTTATTCCTTCATCCATTCCACCACTAG
>MSTRG.60684.1:267-314 ORF7_MSTRG.60684.1:266:313
ATGATGAAGAAGAAGGACTTATGTGGGTTTTTTTTTTGTTTTTTTTGA
>MSTRG.60684.1:375-440 ORF8_MSTRG.60684.1:374:439
ATGAAGAGAAGGAGTATGAAGGTTGGAAGGAGATCATGGTTTCTTGGAGAAAATTTAGAGATTTAG
>MSTRG.60684.1:c478-437 ORF9_MSTRG.60684.1:477:436
ATGAAACAACCAGATAATCTCTCATTTTCATTCTCGTTCTAA
>MSTRG.60684.1:c411-253 ORF10_MSTRG.60684.1:410:252
ATGATCTCCTTCCAACCTTCATACTCCTTCTCTTCATTCTATTTTCATCTTCTTCCCTTATTCATAACAA
TATTATTTTTTATTTTAGAGAATCATTTCAAAAAAAACAAAAAAAAAACCCACATAAGTCCTTCTTCTTC
ATCATTTATTTACAATTAA
>MSTRG.60684.1:c216-142 ORF11_MSTRG.60684.1:215:141
ATGGTCAGACGAATGGATGATAGACGGACTAGTGGTGGAATGGATGAAGGAATAAGACCATTAAACAGAA
GGTAA
>MSTRG.60684.1:c200-162 ORF12_MSTRG.60684.1:199:161
ATGATAGACGGACTAGTGGTGGAATGGATGAAGGAATAA
>MSTRG.60684.1:c128-63 ORF13_MSTRG.60684.1:127:62
ATGATCGTGATTGTGAAAAATACAGTGACAGGGGATGGACAAATTATAAGTTTGAGAGCTGAATGA

>ORF1_MSTRG.60684.1:396:431 unnamed protein product
MEGDHGFLEKI
>ORF2_MSTRG.60684.1:447:497 unnamed protein product
MKMRDYLVVSYFYLLM
>ORF3_MSTRG.60684.1:97:255 unnamed protein product
MSLYFSQSRSFRVSNYLLFNGLIPSSIPPLVRLSSIRLTISFRGLYFSLSLF
>ORF4_MSTRG.60684.1:286:318 unnamed protein product
MWVFFLFFLK
>ORF5_MSTRG.60684.1:409:450 unnamed protein product
MVSWRKFRDLERE
>ORF6_MSTRG.60684.1:86:187 unnamed protein product
MSIPCHCIFHNHDHLGFQITFCLMVLFLHPFHH
>ORF7_MSTRG.60684.1:266:313 unnamed protein product
MMKKKDLCGFFFCFF
>ORF8_MSTRG.60684.1:374:439 unnamed protein product
MKRRSMKVGRRSWFLGENLEI
>ORF9_MSTRG.60684.1:477:436 unnamed protein product
MKQPDNLSFSFSF
>ORF10_MSTRG.60684.1:410:252 unnamed protein product
MISFQPSYSFSSFYFHLLPLFITILFFILENHFKKNKKKTHISPSSSSFIYN
>ORF11_MSTRG.60684.1:215:141 unnamed protein product
MVRRMDDRRTSGGMDEGIRPLNRR
>ORF12_MSTRG.60684.1:199:161 unnamed protein product
MIDGLVVEWMKE
>ORF13_MSTRG.60684.1:127:62 unnamed protein product
MIVIVKNTVTGDGQIISLRAE

Check Peptide Activity