lncRNA Details

Basic Information

CoNCRAtlas IDCoLNCGB14609
TranscriptMSTRG.49148.3
Length273 bp
GC Content39.34%
LocusD03:35515172-35515444 (-)
Directionsense
Typegenic
Exon Number1
Coding ProbabilityCNCI score: -0.0167936 | CPC2 non-coding probability: 0.960905 | PLncPRO non-coding probability: 0.638
>MSTRG.49148.3 CoLNCGB14609
ATGGTGGTTTCACTATATCCTGCATGCTCCCAAACTAACTTGTTCAAAGGAAGAAGAGAA
AAGGTCTATCATGAGGGAGAAGAACCTGTCAGCTTAACCAAGGATAATTGCCTGGAATCC
AACCAAGAAATTAAACTTGGTGAAACTTCTTGTGAGCTACAGGCAAGTCATCCTTGGCTA
CCAAACAAGATTCTTATCTTCATGGAAGACCTCTCTTCCATTTCATTGATTCCTTGTATT
CCATATATATATACCCAAATGCACGTACATTG

Not available

Expression Profile

Tissue Specificity Index: Bract: 0.06; Fiber: 0.4797; Hypocotyl: 0.0682; Leaf: 0.0551; Ovule: 0.2193; Pistil: 0.0109; Root: 0.064; Stem: 0.0428 | Tau: 0.9166

Overlapping Elements

No overlap molecule

Targeted By

gba-miR2594

sORFs

>MSTRG.49148.3:1-270 ORF1_MSTRG.49148.3:0:269
ATGGTGGTTTCACTATATCCTGCATGCTCCCAAACTAACTTGTTCAAAGGAAGAAGAGAAAAGGTCTATC
ATGAGGGAGAAGAACCTGTCAGCTTAACCAAGGATAATTGCCTGGAATCCAACCAAGAAATTAAACTTGG
TGAAACTTCTTGTGAGCTACAGGCAAGTCATCCTTGGCTACCAAACAAGATTCTTATCTTCATGGAAGAC
CTCTCTTCCATTTCATTGATTCCTTGTATTCCATATATATATACCCAAATGCACGTACAT
>MSTRG.49148.3:20-97 ORF2_MSTRG.49148.3:19:96
CTGCATGCTCCCAAACTAACTTGTTCAAAGGAAGAAGAGAAAAGGTCTATCATGAGGGAGAAGAACCTGT
CAGCTTAA
>MSTRG.49148.3:137-229 ORF3_MSTRG.49148.3:136:228
TTGGTGAAACTTCTTGTGAGCTACAGGCAAGTCATCCTTGGCTACCAAACAAGATTCTTATCTTCATGGA
AGACCTCTCTTCCATTTCATTGA
>MSTRG.49148.3:174-272 ORF4_MSTRG.49148.3:173:271
TTGGCTACCAAACAAGATTCTTATCTTCATGGAAGACCTCTCTTCCATTTCATTGATTCCTTGTATTCCA
TATATATATACCCAAATGCACGTACATTG
>MSTRG.49148.3:c221-168 ORF5_MSTRG.49148.3:220:167
ATGGAAGAGAGGTCTTCCATGAAGATAAGAATCTTGTTTGGTAGCCAAGGATGA
>MSTRG.49148.3:c122-69 ORF6_MSTRG.49148.3:121:68
TTGGATTCCAGGCAATTATCCTTGGTTAAGCTGACAGGTTCTTCTCCCTCATGA
>MSTRG.49148.3:c47-3 ORF7_MSTRG.49148.3:46:2
TTGAACAAGTTAGTTTGGGAGCATGCAGGATATAGTGAAACCACC
>MSTRG.49148.3:c244-200 ORF8_MSTRG.49148.3:243:199
ATGGAATACAAGGAATCAATGAAATGGAAGAGAGGTCTTCCATGA
>MSTRG.49148.3:c184-131 ORF9_MSTRG.49148.3:183:130
TTGGTAGCCAAGGATGACTTGCCTGTAGCTCACAAGAAGTTTCACCAAGTTTAA
>MSTRG.49148.3:c270-223 ORF10_MSTRG.49148.3:269:222
ATGTACGTGCATTTGGGTATATATATATGGAATACAAGGAATCAATGA
>MSTRG.49148.3:c126-94 ORF11_MSTRG.49148.3:125:93
TTGGTTGGATTCCAGGCAATTATCCTTGGTTAA
>MSTRG.49148.3:c72-13 ORF12_MSTRG.49148.3:71:12
ATGATAGACCTTTTCTCTTCTTCCTTTGAACAAGTTAGTTTGGGAGCATGCAGGATATAG

>ORF1_MSTRG.49148.3:0:269 unnamed protein product, partial
MVVSLYPACSQTNLFKGRREKVYHEGEEPVSLTKDNCLESNQEIKLGETSCELQASHPWLPNKILIFMED
LSSISLIPCIPYIYTQMHVH
>ORF2_MSTRG.49148.3:19:96 unnamed protein product
MHAPKLTCSKEEEKRSIMREKNLSA
>ORF3_MSTRG.49148.3:136:228 unnamed protein product
MVKLLVSYRQVILGYQTRFLSSWKTSLPFH
>ORF4_MSTRG.49148.3:173:271 unnamed protein product, partial
MATKQDSYLHGRPLFHFIDSLYSIYIYPNARTL
>ORF5_MSTRG.49148.3:220:167 unnamed protein product
MEERSSMKIRILFGSQG
>ORF6_MSTRG.49148.3:121:68 unnamed protein product
MDSRQLSLVKLTGSSPS
>ORF7_MSTRG.49148.3:46:2 unnamed protein product, partial
MNKLVWEHAGYSETT
>ORF8_MSTRG.49148.3:243:199 unnamed protein product
MEYKESMKWKRGLP
>ORF9_MSTRG.49148.3:183:130 unnamed protein product
MVAKDDLPVAHKKFHQV
>ORF10_MSTRG.49148.3:269:222 unnamed protein product, partial
MYVHLGIYIWNTRNQ
>ORF11_MSTRG.49148.3:125:93 unnamed protein product
MVGFQAIILG
>ORF12_MSTRG.49148.3:71:12 unnamed protein product
MIDLFSSSFEQVSLGACRI

Check Peptide Activity