lncRNA Details - CoNCRAtlas

Basic Information

CoNCRAtlas ID	CoLNCGB14608
Transcript	MSTRG.49148.2
Length	465 bp
GC Content	41.38%
Locus	D03:35514980-35515444 (-)
Direction	sense
Type	genic
Exon Number	2
Coding Probability	CNCI score: -0.069632 \| CPC2 non-coding probability: 0.56235 \| PLncPRO non-coding probability: 0.679

>MSTRG.49148.2 CoLNCGB14608
ATGGTGGTTTCACTATATCCTGCATGCTCCCAAACTAACTTGTTCAAAGGAAGAAGAGAA
AAGGTCTATCATGAGGGAGAAGAACCTGTCAGCTTAACCAAGGATAATTGCCTGGAATCC
AACCAAGAAATTAAACTTGGTGAAACTTCTTGTGAGCTACAGGCAAGTCATCCTTGGCTA
CCAAACAAGATTCTTATCTTCATGGAAGACCTCTCTTCCATTTCATTGATTCCTTGTATT
CCATATATATATACCCAAATGCACGTACATTGACAAGGGGAGGAAGACAAGGACTAGCAT
GAAAGAAAAGAACCTGTCAAGTTAGCCAAGGTGACTGCCTGGTACCCAACAATGGTTTCA
GGGAAATTTGAAACCTCTTGGAAGGAGCAGGCAAGTCATCCTTGGCTACCAAACAGATCT
CTTATCTTCGTGTTAGACCTTTCTTCCTCTCATGTATGCAAAAA

Not available

Expression Profile

Tissue Specificity Index: Fiber: 0.69; Leaf: 0.0868; Ovule: 0.1927; Stem: 0.0305 | Tau: 0.9654

Overlapping Elements

No overlap molecule

Targeted By

gba-miR2594, gba-miR2594

sORFs

>MSTRG.49148.2:1-273 ORF1_MSTRG.49148.2:0:272
ATGGTGGTTTCACTATATCCTGCATGCTCCCAAACTAACTTGTTCAAAGGAAGAAGAGAAAAGGTCTATC
ATGAGGGAGAAGAACCTGTCAGCTTAACCAAGGATAATTGCCTGGAATCCAACCAAGAAATTAAACTTGG
TGAAACTTCTTGTGAGCTACAGGCAAGTCATCCTTGGCTACCAAACAAGATTCTTATCTTCATGGAAGAC
CTCTCTTCCATTTCATTGATTCCTTGTATTCCATATATATATACCCAAATGCACGTACATTGA
>MSTRG.49148.2:352-462 ORF2_MSTRG.49148.2:351:461
ATGGTTTCAGGGAAATTTGAAACCTCTTGGAAGGAGCAGGCAAGTCATCCTTGGCTACCAAACAGATCTC
TTATCTTCGTGTTAGACCTTTCTTCCTCTCATGTATGCAAA
>MSTRG.49148.2:20-97 ORF3_MSTRG.49148.2:19:96
CTGCATGCTCCCAAACTAACTTGTTCAAAGGAAGAAGAGAAAAGGTCTATCATGAGGGAGAAGAACCTGT
CAGCTTAA
>MSTRG.49148.2:137-229 ORF4_MSTRG.49148.2:136:228
TTGGTGAAACTTCTTGTGAGCTACAGGCAAGTCATCCTTGGCTACCAAACAAGATTCTTATCTTCATGGA
AGACCTCTCTTCCATTTCATTGA
>MSTRG.49148.2:335-436 ORF5_MSTRG.49148.2:334:435
CTGCCTGGTACCCAACAATGGTTTCAGGGAAATTTGAAACCTCTTGGAAGGAGCAGGCAAGTCATCCTTG
GCTACCAAACAGATCTCTTATCTTCGTGTTAG
>MSTRG.49148.2:174-302 ORF6_MSTRG.49148.2:173:301
TTGGCTACCAAACAAGATTCTTATCTTCATGGAAGACCTCTCTTCCATTTCATTGATTCCTTGTATTCCA
TATATATATACCCAAATGCACGTACATTGACAAGGGGAGGAAGACAAGGACTAGCATGA
>MSTRG.49148.2:339-371 ORF7_MSTRG.49148.2:338:370
CTGGTACCCAACAATGGTTTCAGGGAAATTTGA
>MSTRG.49148.2:378-464 ORF8_MSTRG.49148.2:377:463
TTGGAAGGAGCAGGCAAGTCATCCTTGGCTACCAAACAGATCTCTTATCTTCGTGTTAGACCTTTCTTCC
TCTCATGTATGCAAAAA
>MSTRG.49148.2:c329-294 ORF9_MSTRG.49148.2:328:293
TTGGCTAACTTGACAGGTTCTTTTCTTTCATGCTAG
>MSTRG.49148.2:c290-168 ORF10_MSTRG.49148.2:289:167
TTGTCTTCCTCCCCTTGTCAATGTACGTGCATTTGGGTATATATATATGGAATACAAGGAATCAATGAAA
TGGAAGAGAGGTCTTCCATGAAGATAAGAATCTTGTTTGGTAGCCAAGGATGA
>MSTRG.49148.2:c122-69 ORF11_MSTRG.49148.2:121:68
TTGGATTCCAGGCAATTATCCTTGGTTAAGCTGACAGGTTCTTCTCCCTCATGA
>MSTRG.49148.2:c47-3 ORF12_MSTRG.49148.2:46:2
TTGAACAAGTTAGTTTGGGAGCATGCAGGATATAGTGAAACCACC
>MSTRG.49148.2:c412-317 ORF13_MSTRG.49148.2:411:316
TTGGTAGCCAAGGATGACTTGCCTGCTCCTTCCAAGAGGTTTCAAATTTCCCTGAAACCATTGTTGGGTA
CCAGGCAGTCACCTTGGCTAACTTGA
>MSTRG.49148.2:c244-200 ORF14_MSTRG.49148.2:243:199
ATGGAATACAAGGAATCAATGAAATGGAAGAGAGGTCTTCCATGA
>MSTRG.49148.2:c184-131 ORF15_MSTRG.49148.2:183:130
TTGGTAGCCAAGGATGACTTGCCTGTAGCTCACAAGAAGTTTCACCAAGTTTAA
>MSTRG.49148.2:c399-358 ORF16_MSTRG.49148.2:398:357
ATGACTTGCCTGCTCCTTCCAAGAGGTTTCAAATTTCCCTGA
>MSTRG.49148.2:c300-223 ORF17_MSTRG.49148.2:299:222
ATGCTAGTCCTTGTCTTCCTCCCCTTGTCAATGTACGTGCATTTGGGTATATATATATGGAATACAAGGA
ATCAATGA
>MSTRG.49148.2:c126-94 ORF18_MSTRG.49148.2:125:93
TTGGTTGGATTCCAGGCAATTATCCTTGGTTAA
>MSTRG.49148.2:c72-13 ORF19_MSTRG.49148.2:71:12
ATGATAGACCTTTTCTCTTCTTCCTTTGAACAAGTTAGTTTGGGAGCATGCAGGATATAG

>ORF1_MSTRG.49148.2:0:272 unnamed protein product, partial
MVVSLYPACSQTNLFKGRREKVYHEGEEPVSLTKDNCLESNQEIKLGETSCELQASHPWLPNKILIFMED
LSSISLIPCIPYIYTQMHVH
>ORF2_MSTRG.49148.2:351:461 unnamed protein product, partial
MVSGKFETSWKEQASHPWLPNRSLIFVLDLSSSHVCK
>ORF3_MSTRG.49148.2:19:96 unnamed protein product
MHAPKLTCSKEEEKRSIMREKNLSA
>ORF4_MSTRG.49148.2:136:228 unnamed protein product
MVKLLVSYRQVILGYQTRFLSSWKTSLPFH
>ORF5_MSTRG.49148.2:334:435 unnamed protein product
MPGTQQWFQGNLKPLGRSRQVILGYQTDLLSSC
>ORF6_MSTRG.49148.2:173:301 unnamed protein product
MATKQDSYLHGRPLFHFIDSLYSIYIYPNARTLTRGGRQGLA
>ORF7_MSTRG.49148.2:338:370 unnamed protein product
MVPNNGFREI
>ORF8_MSTRG.49148.2:377:463 unnamed protein product, partial
MEGAGKSSLATKQISYLRVRPFFLSCMQK
>ORF9_MSTRG.49148.2:328:293 unnamed protein product
MANLTGSFLSC
>ORF10_MSTRG.49148.2:289:167 unnamed protein product
MSSSPCQCTCIWVYIYGIQGINEMEERSSMKIRILFGSQG
>ORF11_MSTRG.49148.2:121:68 unnamed protein product
MDSRQLSLVKLTGSSPS
>ORF12_MSTRG.49148.2:46:2 unnamed protein product, partial
MNKLVWEHAGYSETT
>ORF13_MSTRG.49148.2:411:316 unnamed protein product
MVAKDDLPAPSKRFQISLKPLLGTRQSPWLT
>ORF14_MSTRG.49148.2:243:199 unnamed protein product
MEYKESMKWKRGLP
>ORF15_MSTRG.49148.2:183:130 unnamed protein product
MVAKDDLPVAHKKFHQV
>ORF16_MSTRG.49148.2:398:357 unnamed protein product
MTCLLLPRGFKFP
>ORF17_MSTRG.49148.2:299:222 unnamed protein product
MLVLVFLPLSMYVHLGIYIWNTRNQ
>ORF18_MSTRG.49148.2:125:93 unnamed protein product
MVGFQAIILG
>ORF19_MSTRG.49148.2:71:12 unnamed protein product
MIDLFSSSFEQVSLGACRI

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