lncRNA Details

Basic Information

CoNCRAtlas IDCoLNCGB14607
TranscriptMSTRG.49148.1
Length553 bp
GC Content40.22%
LocusD03:35514892-35515444 (-)
Directionsense
Typegenic
Exon Number2
Coding ProbabilityCNCI score: -0.069632 | CPC2 non-coding probability: 0.638727 | PLncPRO non-coding probability: 0.77
>MSTRG.49148.1 CoLNCGB14607
ATGGTGGTTTCACTATATCCTGCATGCTCCCAAACTAACTTGTTCAAAGGAAGAAGAGAA
AAGGTCTATCATGAGGGAGAAGAACCTGTCAGCTTAACCAAGGATAATTGCCTGGAATCC
AACCAAGAAATTAAACTTGGTGAAACTTCTTGTGAGCTACAGGCAAGTCATCCTTGGCTA
CCAAACAAGATTCTTATCTTCATGGAAGACCTCTCTTCCATTTCATTGATTCCTTGTATT
CCATATATATATACCCAAATGCACGTACATTGACAAGGGGAGGAAGACAAGGACTAGCAT
GAAAGAAAAGAACCTGTCAAGTTAGCCAAGGTGACTGCCTGGTACCCAACAATGGTTTCA
GGGAAATTTGAAACCTCTTGGAAGGAGCAGGCAAGTCATCCTTGGCTACCAAACAGATCT
CTTATCTTCGTGTTAGACCTTTCTTCCTCTCATGTATGCAAAAACACAACATTTTGAAGT
CTATATTTATAGCAGACGGAAATTGAGAGGTTTATATCCCTTCTCATCAATTTGAGTCAT
CCATAGGTTTTC

Not available

Expression Profile

Tissue Specificity Index: Fiber: 0.6636; Ovule: 0.3364 | Tau: 0.961

Overlapping Elements

No overlap molecule

Targeted By

gba-miR2594, gba-miR2594

sORFs

>MSTRG.49148.1:1-273 ORF1_MSTRG.49148.1:0:272
ATGGTGGTTTCACTATATCCTGCATGCTCCCAAACTAACTTGTTCAAAGGAAGAAGAGAAAAGGTCTATC
ATGAGGGAGAAGAACCTGTCAGCTTAACCAAGGATAATTGCCTGGAATCCAACCAAGAAATTAAACTTGG
TGAAACTTCTTGTGAGCTACAGGCAAGTCATCCTTGGCTACCAAACAAGATTCTTATCTTCATGGAAGAC
CTCTCTTCCATTTCATTGATTCCTTGTATTCCATATATATATACCCAAATGCACGTACATTGA
>MSTRG.49148.1:352-477 ORF2_MSTRG.49148.1:351:476
ATGGTTTCAGGGAAATTTGAAACCTCTTGGAAGGAGCAGGCAAGTCATCCTTGGCTACCAAACAGATCTC
TTATCTTCGTGTTAGACCTTTCTTCCTCTCATGTATGCAAAAACACAACATTTTGA
>MSTRG.49148.1:20-97 ORF3_MSTRG.49148.1:19:96
CTGCATGCTCCCAAACTAACTTGTTCAAAGGAAGAAGAGAAAAGGTCTATCATGAGGGAGAAGAACCTGT
CAGCTTAA
>MSTRG.49148.1:137-229 ORF4_MSTRG.49148.1:136:228
TTGGTGAAACTTCTTGTGAGCTACAGGCAAGTCATCCTTGGCTACCAAACAAGATTCTTATCTTCATGGA
AGACCTCTCTTCCATTTCATTGA
>MSTRG.49148.1:335-436 ORF5_MSTRG.49148.1:334:435
CTGCCTGGTACCCAACAATGGTTTCAGGGAAATTTGAAACCTCTTGGAAGGAGCAGGCAAGTCATCCTTG
GCTACCAAACAGATCTCTTATCTTCGTGTTAG
>MSTRG.49148.1:452-535 ORF6_MSTRG.49148.1:451:534
ATGTATGCAAAAACACAACATTTTGAAGTCTATATTTATAGCAGACGGAAATTGAGAGGTTTATATCCCT
TCTCATCAATTTGA
>MSTRG.49148.1:174-302 ORF7_MSTRG.49148.1:173:301
TTGGCTACCAAACAAGATTCTTATCTTCATGGAAGACCTCTCTTCCATTTCATTGATTCCTTGTATTCCA
TATATATATACCCAAATGCACGTACATTGACAAGGGGAGGAAGACAAGGACTAGCATGA
>MSTRG.49148.1:339-371 ORF8_MSTRG.49148.1:338:370
CTGGTACCCAACAATGGTTTCAGGGAAATTTGA
>MSTRG.49148.1:378-506 ORF9_MSTRG.49148.1:377:505
TTGGAAGGAGCAGGCAAGTCATCCTTGGCTACCAAACAGATCTCTTATCTTCGTGTTAGACCTTTCTTCC
TCTCATGTATGCAAAAACACAACATTTTGAAGTCTATATTTATAGCAGACGGAAATTGA
>MSTRG.49148.1:c540-487 ORF10_MSTRG.49148.1:539:486
ATGACTCAAATTGATGAGAAGGGATATAAACCTCTCAATTTCCGTCTGCTATAA
>MSTRG.49148.1:c399-358 ORF11_MSTRG.49148.1:398:357
ATGACTTGCCTGCTCCTTCCAAGAGGTTTCAAATTTCCCTGA
>MSTRG.49148.1:c300-223 ORF12_MSTRG.49148.1:299:222
ATGCTAGTCCTTGTCTTCCTCCCCTTGTCAATGTACGTGCATTTGGGTATATATATATGGAATACAAGGA
ATCAATGA
>MSTRG.49148.1:c126-94 ORF13_MSTRG.49148.1:125:93
TTGGTTGGATTCCAGGCAATTATCCTTGGTTAA
>MSTRG.49148.1:c72-13 ORF14_MSTRG.49148.1:71:12
ATGATAGACCTTTTCTCTTCTTCCTTTGAACAAGTTAGTTTGGGAGCATGCAGGATATAG
>MSTRG.49148.1:c530-450 ORF15_MSTRG.49148.1:529:449
TTGATGAGAAGGGATATAAACCTCTCAATTTCCGTCTGCTATAAATATAGACTTCAAAATGTTGTGTTTT
TGCATACATGA
>MSTRG.49148.1:c329-294 ORF16_MSTRG.49148.1:328:293
TTGGCTAACTTGACAGGTTCTTTTCTTTCATGCTAG
>MSTRG.49148.1:c290-168 ORF17_MSTRG.49148.1:289:167
TTGTCTTCCTCCCCTTGTCAATGTACGTGCATTTGGGTATATATATATGGAATACAAGGAATCAATGAAA
TGGAAGAGAGGTCTTCCATGAAGATAAGAATCTTGTTTGGTAGCCAAGGATGA
>MSTRG.49148.1:c122-69 ORF18_MSTRG.49148.1:121:68
TTGGATTCCAGGCAATTATCCTTGGTTAAGCTGACAGGTTCTTCTCCCTCATGA
>MSTRG.49148.1:c47-3 ORF19_MSTRG.49148.1:46:2
TTGAACAAGTTAGTTTGGGAGCATGCAGGATATAGTGAAACCACC
>MSTRG.49148.1:c472-422 ORF20_MSTRG.49148.1:471:421
ATGTTGTGTTTTTGCATACATGAGAGGAAGAAAGGTCTAACACGAAGATAA
>MSTRG.49148.1:c412-317 ORF21_MSTRG.49148.1:411:316
TTGGTAGCCAAGGATGACTTGCCTGCTCCTTCCAAGAGGTTTCAAATTTCCCTGAAACCATTGTTGGGTA
CCAGGCAGTCACCTTGGCTAACTTGA
>MSTRG.49148.1:c244-200 ORF22_MSTRG.49148.1:243:199
ATGGAATACAAGGAATCAATGAAATGGAAGAGAGGTCTTCCATGA
>MSTRG.49148.1:c184-131 ORF23_MSTRG.49148.1:183:130
TTGGTAGCCAAGGATGACTTGCCTGTAGCTCACAAGAAGTTTCACCAAGTTTAA

>ORF1_MSTRG.49148.1:0:272 unnamed protein product, partial
MVVSLYPACSQTNLFKGRREKVYHEGEEPVSLTKDNCLESNQEIKLGETSCELQASHPWLPNKILIFMED
LSSISLIPCIPYIYTQMHVH
>ORF2_MSTRG.49148.1:351:476 unnamed protein product
MVSGKFETSWKEQASHPWLPNRSLIFVLDLSSSHVCKNTTF
>ORF3_MSTRG.49148.1:19:96 unnamed protein product
MHAPKLTCSKEEEKRSIMREKNLSA
>ORF4_MSTRG.49148.1:136:228 unnamed protein product
MVKLLVSYRQVILGYQTRFLSSWKTSLPFH
>ORF5_MSTRG.49148.1:334:435 unnamed protein product
MPGTQQWFQGNLKPLGRSRQVILGYQTDLLSSC
>ORF6_MSTRG.49148.1:451:534 unnamed protein product
MYAKTQHFEVYIYSRRKLRGLYPFSSI
>ORF7_MSTRG.49148.1:173:301 unnamed protein product
MATKQDSYLHGRPLFHFIDSLYSIYIYPNARTLTRGGRQGLA
>ORF8_MSTRG.49148.1:338:370 unnamed protein product
MVPNNGFREI
>ORF9_MSTRG.49148.1:377:505 unnamed protein product
MEGAGKSSLATKQISYLRVRPFFLSCMQKHNILKSIFIADGN
>ORF10_MSTRG.49148.1:539:486 unnamed protein product
MTQIDEKGYKPLNFRLL
>ORF11_MSTRG.49148.1:398:357 unnamed protein product
MTCLLLPRGFKFP
>ORF12_MSTRG.49148.1:299:222 unnamed protein product
MLVLVFLPLSMYVHLGIYIWNTRNQ
>ORF13_MSTRG.49148.1:125:93 unnamed protein product
MVGFQAIILG
>ORF14_MSTRG.49148.1:71:12 unnamed protein product
MIDLFSSSFEQVSLGACRI
>ORF15_MSTRG.49148.1:529:449 unnamed protein product
MMRRDINLSISVCYKYRLQNVVFLHT
>ORF16_MSTRG.49148.1:328:293 unnamed protein product
MANLTGSFLSC
>ORF17_MSTRG.49148.1:289:167 unnamed protein product
MSSSPCQCTCIWVYIYGIQGINEMEERSSMKIRILFGSQG
>ORF18_MSTRG.49148.1:121:68 unnamed protein product
MDSRQLSLVKLTGSSPS
>ORF19_MSTRG.49148.1:46:2 unnamed protein product, partial
MNKLVWEHAGYSETT
>ORF20_MSTRG.49148.1:471:421 unnamed protein product
MLCFCIHERKKGLTRR
>ORF21_MSTRG.49148.1:411:316 unnamed protein product
MVAKDDLPAPSKRFQISLKPLLGTRQSPWLT
>ORF22_MSTRG.49148.1:243:199 unnamed protein product
MEYKESMKWKRGLP
>ORF23_MSTRG.49148.1:183:130 unnamed protein product
MVAKDDLPVAHKKFHQV

Check Peptide Activity