lncRNA Details

Basic Information

CoNCRAtlas IDCoLNCGB07624
TranscriptMSTRG.30892.1
Length766 bp
GC Content43.92%
LocusA10:105584318-105585083 (+)
Directionsense
Typeintergenic
Exon Number2
Coding ProbabilityCNCI score: -0.1081344 | CPC2 non-coding probability: 0.982845 | PLncPRO non-coding probability: 0.848
>MSTRG.30892.1 CoLNCGB07624
AAAACTTTAAAATTCTCTCTGAAATGAGAGAGGAAAGAAAGGTCTAAGCTCCGTCGAGCT
TCCGTTTCCAAGTGCCCACAAGCCCACGCGCCACCACACCCAGAGGTCGGAGGGTTCTAA
ACCCTCGTTCTTTTAAGAAATACACAGGTAACCTCCTCCTTTTTACGATATTATCAGTTT
TTGCAAAAGATCGATTCGCATGCTCGTTTAAAAAAAATAAATAACAGAATATAAAGCTTT
AATCACCTTTTAAAGAAACTGCTTGAACTTCTTTTTTATGTATGTATCTTTTATATTTTG
TAAAAAAAACGGGGGGTCCCTGTTACAGTGAGATGATTCGGCTTTTATAGCCTCTTTTTA
CAAGTTGTTTTATCCCTATTCGATTTCTTGCCTTGTTTGCAGGTACCAGCGAGGAGATTT
AGCGATCATGGACGAATGCTGATAACAGCACATCGGCGTTGATTCGGGCGTTAACCATGG
CTAGATTCGAGGCCTGGAATCATGGCCTGGAATCACTGCAAGACAAACGGACACGAGTCG
AAGGGACGTGACTTTTGGACTGATTGCGGCGCGAAGCTTCTAGAAACCCATTTGCGGCGC
CTAAGGTTCCAGAAACCCTAGGTCTTTCCTCATCTGTTAAACATTTGGGCCCCATGGGCC
CCGGGTGTAATGGGTATGGGGTGGTAGCATAATTGGGTATGGGCTATCAGGTTGTAACCG
GGCATAGGGTTTAGGTATTTGGGCTGTTGGGTTTTAATTTTTGGG

Not available

Expression Profile

Tissue Specificity Index: Anther: 1.0 | Tau: 1.0

Overlapping Elements

No overlap molecule

Targeted By

gba-miR3267a

sORFs

>MSTRG.30892.1:181-234 ORF1_MSTRG.30892.1:180:233
TTGCAAAAGATCGATTCGCATGCTCGTTTAAAAAAAATAAATAACAGAATATAA
>MSTRG.30892.1:259-303 ORF2_MSTRG.30892.1:258:302
CTGCTTGAACTTCTTTTTTATGTATGTATCTTTTATATTTTGTAA
>MSTRG.30892.1:388-462 ORF3_MSTRG.30892.1:387:461
TTGCCTTGTTTGCAGGTACCAGCGAGGAGATTTAGCGATCATGGACGAATGCTGATAACAGCACATCGGC
GTTGA
>MSTRG.30892.1:502-621 ORF4_MSTRG.30892.1:501:620
ATGGCCTGGAATCACTGCAAGACAAACGGACACGAGTCGAAGGGACGTGACTTTTGGACTGATTGCGGCG
CGAAGCTTCTAGAAACCCATTTGCGGCGCCTAAGGTTCCAGAAACCCTAG
>MSTRG.30892.1:634-687 ORF5_MSTRG.30892.1:633:686
CTGTTAAACATTTGGGCCCCATGGGCCCCGGGTGTAATGGGTATGGGGTGGTAG
>MSTRG.30892.1:263-331 ORF6_MSTRG.30892.1:262:330
TTGAACTTCTTTTTTATGTATGTATCTTTTATATTTTGTAAAAAAAACGGGGGGTCCCTGTTACAGTGA
>MSTRG.30892.1:365-442 ORF7_MSTRG.30892.1:364:441
TTGTTTTATCCCTATTCGATTTCTTGCCTTGTTTGCAGGTACCAGCGAGGAGATTTAGCGATCATGGACG
AATGCTGA
>MSTRG.30892.1:494-583 ORF8_MSTRG.30892.1:493:582
CTGGAATCATGGCCTGGAATCACTGCAAGACAAACGGACACGAGTCGAAGGGACGTGACTTTTGGACTGA
TTGCGGCGCGAAGCTTCTAG
>MSTRG.30892.1:282-350 ORF9_MSTRG.30892.1:281:349
ATGTATCTTTTATATTTTGTAAAAAAAACGGGGGGTCCCTGTTACAGTGAGATGATTCGGCTTTTATAG
>MSTRG.30892.1:459-551 ORF10_MSTRG.30892.1:458:550
TTGATTCGGGCGTTAACCATGGCTAGATTCGAGGCCTGGAATCATGGCCTGGAATCACTGCAAGACAAAC
GGACACGAGTCGAAGGGACGTGA
>MSTRG.30892.1:564-692 ORF11_MSTRG.30892.1:563:691
TTGCGGCGCGAAGCTTCTAGAAACCCATTTGCGGCGCCTAAGGTTCCAGAAACCCTAGGTCTTTCCTCAT
CTGTTAAACATTTGGGCCCCATGGGCCCCGGGTGTAATGGGTATGGGGTGGTAGCATAA
>MSTRG.30892.1:693-734 ORF12_MSTRG.30892.1:692:733
TTGGGTATGGGCTATCAGGTTGTAACCGGGCATAGGGTTTAG
>MSTRG.30892.1:c690-637 ORF13_MSTRG.30892.1:689:636
ATGCTACCACCCCATACCCATTACACCCGGGGCCCATGGGGCCCAAATGTTTAA
>MSTRG.30892.1:c633-601 ORF14_MSTRG.30892.1:632:600
ATGAGGAAAGACCTAGGGTTTCTGGAACCTTAG
>MSTRG.30892.1:c453-376 ORF15_MSTRG.30892.1:452:375
ATGTGCTGTTATCAGCATTCGTCCATGATCGCTAAATCTCCTCGCTGGTACCTGCAAACAAGGCAAGAAA
TCGAATAG
>MSTRG.30892.1:c201-163 ORF16_MSTRG.30892.1:200:162
ATGCGAATCGATCTTTTGCAAAAACTGATAATATCGTAA
>MSTRG.30892.1:c81-7 ORF17_MSTRG.30892.1:80:6
TTGTGGGCACTTGGAAACGGAAGCTCGACGGAGCTTAGACCTTTCTTTCCTCTCTCATTTCAGAGAGAAT
TTTAA
>MSTRG.30892.1:c725-630 ORF18_MSTRG.30892.1:724:629
ATGCCCGGTTACAACCTGATAGCCCATACCCAATTATGCTACCACCCCATACCCATTACACCCGGGGCCC
ATGGGGCCCAAATGTTTAACAGATGA
>MSTRG.30892.1:c503-471 ORF19_MSTRG.30892.1:502:470
ATGATTCCAGGCCTCGAATCTAGCCATGGTTAA
>MSTRG.30892.1:c227-174 ORF20_MSTRG.30892.1:226:173
CTGTTATTTATTTTTTTTAAACGAGCATGCGAATCGATCTTTTGCAAAAACTGA
>MSTRG.30892.1:c71-3 ORF21_MSTRG.30892.1:70:2
TTGGAAACGGAAGCTCGACGGAGCTTAGACCTTTCTTTCCTCTCTCATTTCAGAGAGAATTTTAAAGTT
>MSTRG.30892.1:c655-500 ORF22_MSTRG.30892.1:654:499
ATGGGGCCCAAATGTTTAACAGATGAGGAAAGACCTAGGGTTTCTGGAACCTTAGGCGCCGCAAATGGGT
TTCTAGAAGCTTCGCGCCGCAATCAGTCCAAAAGTCACGTCCCTTCGACTCGTGTCCGTTTGTCTTGCAG
TGATTCCAGGCCATGA
>MSTRG.30892.1:c478-419 ORF23_MSTRG.30892.1:477:418
ATGGTTAACGCCCGAATCAACGCCGATGTGCTGTTATCAGCATTCGTCCATGATCGCTAA
>MSTRG.30892.1:c409-323 ORF24_MSTRG.30892.1:408:322
CTGGTACCTGCAAACAAGGCAAGAAATCGAATAGGGATAAAACAACTTGTAAAAAGAGGCTATAAAAGCC
GAATCATCTCACTGTAA
>MSTRG.30892.1:c103-44 ORF25_MSTRG.30892.1:102:43
CTGGGTGTGGTGGCGCGTGGGCTTGTGGGCACTTGGAAACGGAAGCTCGACGGAGCTTAG

>ORF1_MSTRG.30892.1:180:233 unnamed protein product
MQKIDSHARLKKINNRI
>ORF2_MSTRG.30892.1:258:302 unnamed protein product
MLELLFYVCIFYIL
>ORF3_MSTRG.30892.1:387:461 unnamed protein product
MPCLQVPARRFSDHGRMLITAHRR
>ORF4_MSTRG.30892.1:501:620 unnamed protein product
MAWNHCKTNGHESKGRDFWTDCGAKLLETHLRRLRFQKP
>ORF5_MSTRG.30892.1:633:686 unnamed protein product
MLNIWAPWAPGVMGMGW
>ORF6_MSTRG.30892.1:262:330 unnamed protein product
MNFFFMYVSFIFCKKNGGSLLQ
>ORF7_MSTRG.30892.1:364:441 unnamed protein product
MFYPYSISCLVCRYQRGDLAIMDEC
>ORF8_MSTRG.30892.1:493:582 unnamed protein product
MESWPGITARQTDTSRRDVTFGLIAARSF
>ORF9_MSTRG.30892.1:281:349 unnamed protein product
MYLLYFVKKTGGPCYSEMIRLL
>ORF10_MSTRG.30892.1:458:550 unnamed protein product
MIRALTMARFEAWNHGLESLQDKRTRVEGT
>ORF11_MSTRG.30892.1:563:691 unnamed protein product
MRREASRNPFAAPKVPETLGLSSSVKHLGPMGPGCNGYGVVA
>ORF12_MSTRG.30892.1:692:733 unnamed protein product
MGMGYQVVTGHRV
>ORF13_MSTRG.30892.1:689:636 unnamed protein product
MLPPHTHYTRGPWGPNV
>ORF14_MSTRG.30892.1:632:600 unnamed protein product
MRKDLGFLEP
>ORF15_MSTRG.30892.1:452:375 unnamed protein product
MCCYQHSSMIAKSPRWYLQTRQEIE
>ORF16_MSTRG.30892.1:200:162 unnamed protein product
MRIDLLQKLIIS
>ORF17_MSTRG.30892.1:80:6 unnamed protein product
MWALGNGSSTELRPFFPLSFQREF
>ORF18_MSTRG.30892.1:724:629 unnamed protein product
MPGYNLIAHTQLCYHPIPITPGAHGAQMFNR
>ORF19_MSTRG.30892.1:502:470 unnamed protein product
MIPGLESSHG
>ORF20_MSTRG.30892.1:226:173 unnamed protein product
MLFIFFKRACESIFCKN
>ORF21_MSTRG.30892.1:70:2 unnamed protein product, partial
METEARRSLDLSFLSHFRENFKV
>ORF22_MSTRG.30892.1:654:499 unnamed protein product
MGPKCLTDEERPRVSGTLGAANGFLEASRRNQSKSHVPSTRVRLSCSDSRP
>ORF23_MSTRG.30892.1:477:418 unnamed protein product
MVNARINADVLLSAFVHDR
>ORF24_MSTRG.30892.1:408:322 unnamed protein product
MVPANKARNRIGIKQLVKRGYKSRIISL
>ORF25_MSTRG.30892.1:102:43 unnamed protein product
MGVVARGLVGTWKRKLDGA

Check Peptide Activity