Database: PPepDB
3,848 sequences; 236,108 total letters
Query= ORF1_CoMIRGB053:14:88 unnamed protein product, partial
Length=25
***** No hits found *****
Lambda K H a alpha
0.337 0.151 0.468 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5902700
Query= ORF2_CoMIRGB053:54:1 unnamed protein product, partial
Length=18
***** No hits found *****
Lambda K H a alpha
0.321 0.136 0.429 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4249944
Query= ORF3_CoMIRGB053:41:0 unnamed protein product, partial
Length=14
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_256 16.2 7.4
PPepDB_1408 16.2 8.1
> PPepDB_256
Length=59
Score = 16.2 bits (30), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 6/9 (67%), Positives = 7/9 (78%), Gaps = 0/9 (0%)
Query 3 CLKRFGAKT 11
C+KR AKT
Sbjct 44 CMKRCNAKT 52
> PPepDB_1408
Length=250
Score = 16.2 bits (30), Expect = 8.1, Method: Composition-based stats.
Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)
Query 2 CCLKRFG 8
CC RFG
Sbjct 195 CCTGRFG 201
Lambda K H a alpha
0.339 0.147 0.518 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3305512
Database: PPepDB
Posted date: Dec 23, 2019 9:34 PM
Number of letters in database: 236,108
Number of sequences in database: 3,848
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40