Database: PPepDB
3,848 sequences; 236,108 total letters
Query= ORF1_CoMIRGB048:24:71 unnamed protein product, partial
Length=16
***** No hits found *****
Lambda K H a alpha
0.348 0.145 0.482 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3777728
Query= ORF2_CoMIRGB048:56:9 unnamed protein product
Length=15
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_2544 16.5 4.8
> PPepDB_2544
Length=48
Score = 16.5 bits (31), Expect = 4.8, Method: Composition-based stats.
Identities = 6/9 (67%), Positives = 6/9 (67%), Gaps = 0/9 (0%)
Query 3 SHGNKYMHH 11
SHGN HH
Sbjct 20 SHGNCKQHH 28
Lambda K H a alpha
0.322 0.132 0.447 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3541620
Query= ORF3_CoMIRGB048:46:2 unnamed protein product, partial
Length=15
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_1969 16.2 7.1
PPepDB_735 16.2 7.1
PPepDB_2107 15.8 7.7
PPepDB_2169 15.8 8.5
PPepDB_1712 15.8 8.6
PPepDB_1660 15.8 9.0
> PPepDB_1969
Length=29
Score = 16.2 bits (30), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 6/14 (43%), Positives = 7/14 (50%), Gaps = 0/14 (0%)
Query 2 GTNICTITCLSERC 15
G IC TC +C
Sbjct 1 GKPICGETCFKGKC 14
> PPepDB_735
Length=93
Score = 16.2 bits (30), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 6/14 (43%), Positives = 8/14 (57%), Gaps = 0/14 (0%)
Query 2 GTNICTITCLSERC 15
G IC TC+ +C
Sbjct 61 GHPICGETCVGNKC 74
> PPepDB_2107
Length=29
Score = 15.8 bits (29), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 6/14 (43%), Positives = 7/14 (50%), Gaps = 0/14 (0%)
Query 2 GTNICTITCLSERC 15
G IC TC +C
Sbjct 1 GKPICGETCFKGKC 14
> PPepDB_2169
Length=29
Score = 15.8 bits (29), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 6/14 (43%), Positives = 7/14 (50%), Gaps = 0/14 (0%)
Query 2 GTNICTITCLSERC 15
G +C TC RC
Sbjct 1 GLPVCGETCFGGRC 14
> PPepDB_1712
Length=29
Score = 15.8 bits (29), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 6/14 (43%), Positives = 8/14 (57%), Gaps = 0/14 (0%)
Query 2 GTNICTITCLSERC 15
G IC TC+ +C
Sbjct 1 GHPICGETCVGNKC 14
> PPepDB_1660
Length=27
Score = 15.8 bits (29), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)
Query 8 ITCLSERC 15
I CLS RC
Sbjct 10 IPCLSPRC 17
Lambda K H a alpha
0.331 0.136 0.484 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3541620
Database: PPepDB
Posted date: Dec 23, 2019 9:34 PM
Number of letters in database: 236,108
Number of sequences in database: 3,848
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40