Database: PPepDB
3,848 sequences; 236,108 total letters
Query= ORF1_CoMIRGB014:3:41 unnamed protein product
Length=12
***** No hits found *****
Lambda K H a alpha
0.293 0.107 0.254 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2833296
Query= ORF2_CoMIRGB014:34:87 unnamed protein product, partial
Length=18
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_698 16.5 7.0
PPepDB_2245 16.5 7.6
> PPepDB_698
Length=103
Score = 16.5 bits (31), Expect = 7.0, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 13 FSFCQ 17
FSFCQ
Sbjct 94 FSFCQ 98
> PPepDB_2245
Length=129
Score = 16.5 bits (31), Expect = 7.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 13 FSFCQ 17
FSFCQ
Sbjct 120 FSFCQ 124
Lambda K H a alpha
0.353 0.152 0.501 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4249944
Query= ORF3_CoMIRGB014:84:1 unnamed protein product, partial
Length=28
***** No hits found *****
Lambda K H a alpha
0.319 0.126 0.340 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5938712
Database: PPepDB
Posted date: Dec 23, 2019 9:34 PM
Number of letters in database: 236,108
Number of sequences in database: 3,848
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40