Database: PPepDB
3,848 sequences; 236,108 total letters
Query= ORF1_CoMIRGB075:45:83 unnamed protein product, partial
Length=13
***** No hits found *****
Lambda K H a alpha
0.328 0.121 0.504 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3069404
Query= ORF2_CoMIRGB075:1:48 unnamed protein product, partial
Length=15
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_1151 17.3 2.8
PPepDB_3921 16.2 7.4
> PPepDB_1151
Length=255
Score = 17.3 bits (33), Expect = 2.8, Method: Composition-based stats.
Identities = 7/15 (47%), Positives = 10/15 (67%), Gaps = 0/15 (0%)
Query 1 LLIYVVHARNTHAKL 15
LL+ +V AR HA +
Sbjct 12 LLVLLVFARWCHASM 26
> PPepDB_3921
Length=45
Score = 16.2 bits (30), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 6/12 (50%), Positives = 8/12 (67%), Gaps = 0/12 (0%)
Query 4 YVVHARNTHAKL 15
+ +RNT AKL
Sbjct 18 FAGGSRNTCAKL 29
Lambda K H a alpha
0.333 0.140 0.409 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3541620
Query= ORF3_CoMIRGB075:35:82 unnamed protein product, partial
Length=16
***** No hits found *****
Lambda K H a alpha
0.323 0.122 0.339 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3777728
Query= ORF4_CoMIRGB075:84:4 unnamed protein product, partial
Length=26
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_2702 17.7 3.6
PPepDB_1929 16.5 8.8
PPepDB_1675 16.5 9.5
> PPepDB_2702
Length=45
Score = 17.7 bits (34), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 7/19 (37%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
Query 8 CICVFSKLCMCVSRVDDVN 26
C+C +CVSRV +++
Sbjct 10 CLCFLILRIICVSRVKNIS 28
> PPepDB_1929
Length=29
Score = 16.5 bits (31), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 6/10 (60%), Positives = 7/10 (70%), Gaps = 0/10 (0%)
Query 12 FSKLCMCVSR 21
F+ C CVSR
Sbjct 14 FTPGCYCVSR 23
> PPepDB_1675
Length=28
Score = 16.5 bits (31), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 6/10 (60%), Positives = 7/10 (70%), Gaps = 0/10 (0%)
Query 12 FSKLCMCVSR 21
F+ C CVSR
Sbjct 13 FTPGCYCVSR 22
Lambda K H a alpha
0.335 0.138 0.479 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5806500
Query= ORF5_CoMIRGB075:64:2 unnamed protein product, partial
Length=21
***** No hits found *****
Lambda K H a alpha
0.350 0.149 0.544 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4958268
Database: PPepDB
Posted date: Dec 23, 2019 9:34 PM
Number of letters in database: 236,108
Number of sequences in database: 3,848
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40