Database: PPepDB
3,848 sequences; 236,108 total letters
Query= ORF1_CoMIRGH185:60:92 unnamed protein product
Length=10
***** No hits found *****
Lambda K H a alpha
0.324 0.136 0.379 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2361080
Query= ORF2_CoMIRGH185:120:239 unnamed protein product
Length=39
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_3478 20.0 1.2
PPepDB_2597 19.2 1.8
PPepDB_1622 19.2 1.9
PPepDB_1306 18.5 4.9
PPepDB_1412 18.5 6.1
PPepDB_1239 18.5 6.2
PPepDB_1241 18.1 6.7
PPepDB_1240 18.1 7.2
PPepDB_1095 18.1 7.3
PPepDB_1152 17.7 9.8
> PPepDB_3478
Length=78
Score = 20.0 bits (40), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 0/15 (0%)
Query 22 SSHPIFFLLLLTFIL 36
PIF+LLLL F++
Sbjct 5 KKSPIFYLLLLCFLV 19
> PPepDB_2597
Length=46
Score = 19.2 bits (38), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (55%), Gaps = 1/22 (5%)
Query 5 PLCS-LCFCHHLQATLTFSSHP 25
P C LC C H+ T SSHP
Sbjct 24 PTCGRLCDCIHVTTTTCPSSHP 45
> PPepDB_1622
Length=46
Score = 19.2 bits (38), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (55%), Gaps = 1/22 (5%)
Query 5 PLCS-LCFCHHLQATLTFSSHP 25
P C LC C H+ T SSHP
Sbjct 24 PTCGILCDCIHVTTTTCPSSHP 45
> PPepDB_1306
Length=121
Score = 18.5 bits (36), Expect = 4.9, Method: Composition-based stats.
Identities = 9/24 (38%), Positives = 11/24 (46%), Gaps = 1/24 (4%)
Query 3 PTPLCS-LCFCHHLQATLTFSSHP 25
P LC+ C C H+ SHP
Sbjct 40 PQTLCARTCDCIHITTGNCPRSHP 63
> PPepDB_1412
Length=171
Score = 18.5 bits (36), Expect = 6.1, Method: Composition-based stats.
Identities = 7/13 (54%), Positives = 9/13 (69%), Gaps = 0/13 (0%)
Query 22 SSHPIFFLLLLTF 34
+S +FFLLL F
Sbjct 2 TSSSVFFLLLACF 14
> PPepDB_1239
Length=255
Score = 18.5 bits (36), Expect = 6.2, Method: Composition-based stats.
Identities = 5/15 (33%), Positives = 11/15 (73%), Gaps = 0/15 (0%)
Query 23 SHPIFFLLLLTFILY 37
SH F+ ++L+F+ +
Sbjct 8 SHVSFYFIILSFLFF 22
> PPepDB_1241
Length=255
Score = 18.1 bits (35), Expect = 6.7, Method: Composition-based stats.
Identities = 5/15 (33%), Positives = 11/15 (73%), Gaps = 0/15 (0%)
Query 23 SHPIFFLLLLTFILY 37
SH F+ ++L+F+ +
Sbjct 8 SHVSFYFIILSFLFF 22
> PPepDB_1240
Length=255
Score = 18.1 bits (35), Expect = 7.2, Method: Composition-based stats.
Identities = 5/15 (33%), Positives = 11/15 (73%), Gaps = 0/15 (0%)
Query 23 SHPIFFLLLLTFILY 37
SH F+ ++L+F+ +
Sbjct 8 SHVSFYFIILSFLFF 22
> PPepDB_1095
Length=115
Score = 18.1 bits (35), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 5/22 (23%), Positives = 10/22 (45%), Gaps = 0/22 (0%)
Query 10 CFCHHLQATLTFSSHPIFFLLL 31
C+C + + +P F+ L
Sbjct 54 CYCKDVSGETCPADYPAFYCNL 75
> PPepDB_1152
Length=255
Score = 17.7 bits (34), Expect = 9.8, Method: Composition-based stats.
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 5/20 (25%)
Query 13 HHLQATLTFS-----SHPIF 27
HH+ +TF+ HPI+
Sbjct 20 HHVSVAMTFTISNYCPHPIW 39
Lambda K H a alpha
0.341 0.147 0.521 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 6044280
Query= ORF3_CoMIRGH185:112:216 unnamed protein product
Length=34
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_1420 18.5 3.8
> PPepDB_1420
Length=255
Score = 18.5 bits (36), Expect = 3.8, Method: Composition-based stats.
Identities = 6/14 (43%), Positives = 9/14 (64%), Gaps = 0/14 (0%)
Query 21 LLPFLLTLFSSFYF 34
L+P + TLF + F
Sbjct 17 LIPLMFTLFCTILF 30
Lambda K H a alpha
0.341 0.151 0.490 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5964560
Query= ORF4_CoMIRGH185:146:253 unnamed protein product, partial
Length=36
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_1707 19.2 1.4
PPepDB_1020 19.2 2.2
PPepDB_1145 18.5 4.5
PPepDB_1448 18.5 4.8
PPepDB_1351 18.1 5.6
PPepDB_809 18.1 6.9
PPepDB_1309 18.1 7.5
PPepDB_1414 17.7 8.7
> PPepDB_1707
Length=30
Score = 19.2 bits (38), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (4%)
Query 6 PSSHSYLFFSPYFLPFTSNIHSLLIIN 32
P S +F P FLP S S+ +N
Sbjct 5 PCGESCVFL-PCFLPGCSCKSSVCYLN 30
> PPepDB_1020
Length=251
Score = 19.2 bits (38), Expect = 2.2, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 0/28 (0%)
Query 5 SPSSHSYLFFSPYFLPFTSNIHSLLIIN 32
+ SSH ++FFS ++ L+I+N
Sbjct 2 ATSSHYFIFFSILVSISLTDGTQLIIVN 29
> PPepDB_1145
Length=247
Score = 18.5 bits (36), Expect = 4.5, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query 3 LSSPSSHSYLFFSPYFLPFTSNIHS 27
L S S LF +FL F S+IH+
Sbjct 6 LPSMSDLRILFI--FFLCFISSIHA 28
> PPepDB_1448
Length=233
Score = 18.5 bits (36), Expect = 4.8, Method: Composition-based stats.
Identities = 6/13 (46%), Positives = 9/13 (69%), Gaps = 0/13 (0%)
Query 4 SSPSSHSYLFFSP 16
S P+S+SY + P
Sbjct 205 SCPTSYSYAYDDP 217
> PPepDB_1351
Length=239
Score = 18.1 bits (35), Expect = 5.6, Method: Composition-based stats.
Identities = 6/11 (55%), Positives = 9/11 (82%), Gaps = 0/11 (0%)
Query 17 YFLPFTSNIHS 27
+FL F S+IH+
Sbjct 10 FFLCFISSIHA 20
> PPepDB_809
Length=235
Score = 18.1 bits (35), Expect = 6.9, Method: Composition-based stats.
Identities = 6/8 (75%), Positives = 7/8 (88%), Gaps = 0/8 (0%)
Query 6 PSSHSYLF 13
PSS+SY F
Sbjct 209 PSSYSYAF 216
> PPepDB_1309
Length=226
Score = 18.1 bits (35), Expect = 7.5, Method: Composition-based stats.
Identities = 5/13 (38%), Positives = 9/13 (69%), Gaps = 0/13 (0%)
Query 10 SYLFFSPYFLPFT 22
++L+F YF+ T
Sbjct 11 AFLYFGQYFVAVT 23
> PPepDB_1414
Length=252
Score = 17.7 bits (34), Expect = 8.7, Method: Composition-based stats.
Identities = 5/10 (50%), Positives = 8/10 (80%), Gaps = 0/10 (0%)
Query 5 SPSSHSYLFF 14
+ SSH ++FF
Sbjct 2 TTSSHHFIFF 11
Lambda K H a alpha
0.333 0.145 0.435 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 6065988
Query= ORF5_CoMIRGH185:125:0 unnamed protein product, partial
Length=42
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_344 19.6 1.0
PPepDB_2623 19.6 1.0
PPepDB_1389 19.2 3.1
PPepDB_1400 19.2 3.3
PPepDB_997 18.9 5.2
PPepDB_1002 18.5 5.7
PPepDB_1006 18.5 6.0
PPepDB_1058 18.1 8.8
PPepDB_807 18.1 9.9
> PPepDB_344
Length=16
Score = 19.6 bits (39), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 8/13 (62%), Positives = 9/13 (69%), Gaps = 0/13 (0%)
Query 30 SSPALRVPTPTHY 42
S ALRVP+ T Y
Sbjct 3 SGDALRVPSGTTY 15
> PPepDB_2623
Length=16
Score = 19.6 bits (39), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 8/13 (62%), Positives = 9/13 (69%), Gaps = 0/13 (0%)
Query 30 SSPALRVPTPTHY 42
S ALRVP+ T Y
Sbjct 3 SGDALRVPSGTTY 15
> PPepDB_1389
Length=224
Score = 19.2 bits (38), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query 2 HCFKTPNCTPSSVLSIFCQQQSPIASSLSSPA----LRVPTPTHY 42
HC + NC P++ S F + + P A S PT T+Y
Sbjct 175 HCCNSGNCGPTN-FSKFFKDRCPDAYSYPKDDPTSLFTCPTGTNY 218
> PPepDB_1400
Length=225
Score = 19.2 bits (38), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (49%), Gaps = 5/45 (11%)
Query 2 HCFKTPNCTPSSVLSIFCQQQSPIASSL--SSPA--LRVPTPTHY 42
HC + NC+P++ F +++ P A S P PT T+Y
Sbjct 176 HCCNSGNCSPTTFSRYF-KERCPDAYSYPKDDPTSLFTCPTGTNY 219
> PPepDB_997
Length=233
Score = 18.9 bits (37), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (58%), Gaps = 1/26 (4%)
Query 5 KTPNCTPSSVLSIFCQQQSPIASSLS 30
T NC P+S S+F + Q P A S +
Sbjct 186 NTDNCAPTS-YSMFFKNQCPQAYSYA 210
> PPepDB_1002
Length=233
Score = 18.5 bits (36), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (58%), Gaps = 1/26 (4%)
Query 5 KTPNCTPSSVLSIFCQQQSPIASSLS 30
T NC P+S S+F + Q P A S +
Sbjct 186 NTDNCAPTS-YSMFFKNQCPQAYSYA 210
> PPepDB_1006
Length=233
Score = 18.5 bits (36), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (58%), Gaps = 1/26 (4%)
Query 5 KTPNCTPSSVLSIFCQQQSPIASSLS 30
T NC P+S S+F + Q P A S +
Sbjct 186 NTDNCAPTS-YSMFFKNQCPQAYSYA 210
> PPepDB_1058
Length=253
Score = 18.1 bits (35), Expect = 8.8, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 14/27 (52%), Gaps = 0/27 (0%)
Query 4 FKTPNCTPSSVLSIFCQQQSPIASSLS 30
F TP+ S S+F ++ P A S +
Sbjct 202 FGTPDTCQPSEYSVFFKKTCPTAYSYA 228
> PPepDB_807
Length=236
Score = 18.1 bits (35), Expect = 9.9, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 14/27 (52%), Gaps = 0/27 (0%)
Query 4 FKTPNCTPSSVLSIFCQQQSPIASSLS 30
+ TP+ SV S+F + P A S +
Sbjct 183 YATPDTCQPSVYSLFFKHACPRAYSYA 209
Lambda K H a alpha
0.320 0.127 0.411 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 6007180
Query= ORF6_CoMIRGH185:223:188 unnamed protein product
Length=11
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_1336 15.8 6.3
> PPepDB_1336
Length=255
Score = 15.8 bits (29), Expect = 6.3, Method: Composition-based stats.
Identities = 5/7 (71%), Positives = 6/7 (86%), Gaps = 0/7 (0%)
Query 1 MNVRSKR 7
MN RSK+
Sbjct 189 MNTRSKK 195
Lambda K H a alpha
0.318 0.131 0.337 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2597188
Query= ORF7_CoMIRGH185:88:2 unnamed protein product, partial
Length=29
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_1461 17.7 5.2
> PPepDB_1461
Length=99
Score = 17.7 bits (34), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 6/12 (50%), Positives = 9/12 (75%), Gaps = 0/12 (0%)
Query 17 FPPRPLESLHLR 28
+ PR ES+H+R
Sbjct 16 WLPRQWESVHMR 27
Lambda K H a alpha
0.320 0.134 0.431 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5838664
Query= ORF8_CoMIRGH185:102:22 unnamed protein product
Length=26
***** No hits found *****
Lambda K H a alpha
0.334 0.145 0.478 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5806500
Database: PPepDB
Posted date: Dec 23, 2019 9:34 PM
Number of letters in database: 236,108
Number of sequences in database: 3,848
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40