Database: PPepDB
3,848 sequences; 236,108 total letters
Query= ORF1_CoMIRGH063:60:128 unnamed protein product
Length=22
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_1235 16.9 6.6
> PPepDB_1235
Length=255
Score = 16.9 bits (32), Expect = 6.6, Method: Composition-based stats.
Identities = 7/18 (39%), Positives = 9/18 (50%), Gaps = 0/18 (0%)
Query 2 NQTRKSYSYLLFFTNITI 19
NQ S +L FF + I
Sbjct 18 NQMLTSSHFLFFFLSTLI 35
Lambda K H a alpha
0.327 0.136 0.396 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5194376
Query= ORF2_CoMIRGH063:147:215 unnamed protein product
Length=22
***** No hits found *****
Lambda K H a alpha
0.328 0.143 0.414 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5194376
Query= ORF3_CoMIRGH063:31:63 unnamed protein product
Length=10
***** No hits found *****
Lambda K H a alpha
0.300 0.137 0.382 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2361080
Query= ORF4_CoMIRGH063:121:165 unnamed protein product
Length=14
***** No hits found *****
Lambda K H a alpha
0.325 0.135 0.399 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3305512
Query= ORF5_CoMIRGH063:125:184 unnamed protein product
Length=19
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_1558 16.9 5.8
> PPepDB_1558
Length=47
Score = 16.9 bits (32), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 7/17 (41%), Positives = 9/17 (53%), Gaps = 0/17 (0%)
Query 1 MKLSMPKAASCIDDRVL 17
MK S + CI DR+
Sbjct 4 MKGSQHHSFPCISDRLC 20
Lambda K H a alpha
0.328 0.137 0.388 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4486052
Query= ORF6_CoMIRGH063:212:250 unnamed protein product, partial
Length=13
***** No hits found *****
Lambda K H a alpha
0.349 0.137 0.451 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3069404
Query= ORF7_CoMIRGH063:200:78 unnamed protein product
Length=40
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_1545 19.2 1.4
PPepDB_1399 18.9 4.4
PPepDB_2124 17.7 5.8
PPepDB_2212 17.7 6.5
PPepDB_1332 18.1 6.9
PPepDB_1279 18.1 8.6
PPepDB_1235 17.7 9.9
> PPepDB_1545
Length=31
Score = 19.2 bits (38), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query 19 LWASIVSSMFYCDICEEKKV 38
+W V+S+F C C+E KV
Sbjct 9 VWIPCVTSIFNCK-CKENKV 27
> PPepDB_1399
Length=227
Score = 18.9 bits (37), Expect = 4.4, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 12/22 (55%), Gaps = 0/22 (0%)
Query 3 LTNITIIELYHRYKRQLWASIV 24
LTN I E+ + +WA+ V
Sbjct 22 LTNAAIFEIRNNCPYTVWAAYV 43
> PPepDB_2124
Length=28
Score = 17.7 bits (34), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 7/18 (39%), Positives = 11/18 (61%), Gaps = 1/18 (6%)
Query 19 LWASIVSSMFYCDICEEK 36
+W +S MF C C++K
Sbjct 8 VWIPCISGMFGCS-CKDK 24
> PPepDB_2212
Length=30
Score = 17.7 bits (34), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (6%)
Query 19 LWASIVSSMFYCDICEEK 36
+W V+S+F C CE K
Sbjct 9 VWIPCVTSIFNCK-CENK 25
> PPepDB_1332
Length=248
Score = 18.1 bits (35), Expect = 6.9, Method: Composition-based stats.
Identities = 5/14 (36%), Positives = 10/14 (71%), Gaps = 0/14 (0%)
Query 7 TIIELYHRYKRQLW 20
T++EL R+ ++W
Sbjct 65 TVLELPERWSGRIW 78
> PPepDB_1279
Length=156
Score = 18.1 bits (35), Expect = 8.6, Method: Composition-based stats.
Identities = 5/14 (36%), Positives = 10/14 (71%), Gaps = 0/14 (0%)
Query 7 TIIELYHRYKRQLW 20
T+IE+ R+ ++W
Sbjct 60 TVIEMPKRWSGRVW 73
> PPepDB_1235
Length=255
Score = 17.7 bits (34), Expect = 9.9, Method: Composition-based stats.
Identities = 5/14 (36%), Positives = 10/14 (71%), Gaps = 0/14 (0%)
Query 7 TIIELYHRYKRQLW 20
T++EL R+ ++W
Sbjct 81 TVLELPDRWSGRIW 94
Lambda K H a alpha
0.333 0.141 0.449 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5928840
Query= ORF8_CoMIRGH063:68:12 unnamed protein product
Length=18
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_1275 19.2 0.72
PPepDB_3875 16.5 6.5
PPepDB_1640 16.5 8.1
PPepDB_3865 16.2 9.1
PPepDB_1533 16.2 9.1
PPepDB_3864 16.2 9.3
> PPepDB_1275
Length=71
Score = 19.2 bits (38), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 5/16 (31%), Positives = 11/16 (69%), Gaps = 0/16 (0%)
Query 1 MIQTPPSPSPFCIFGY 16
+++ SP P+C+ G+
Sbjct 53 LVRCKDSPGPYCMEGF 68
> PPepDB_3875
Length=93
Score = 16.5 bits (31), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 6/14 (43%), Positives = 8/14 (57%), Gaps = 0/14 (0%)
Query 2 IQTPPSPSPFCIFG 15
++ P PSP C G
Sbjct 18 LKGGPGPSPQCCGG 31
> PPepDB_1640
Length=92
Score = 16.5 bits (31), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)
Query 6 PSPSPFCIFG 15
P PSP C G
Sbjct 22 PGPSPQCCGG 31
> PPepDB_3865
Length=93
Score = 16.2 bits (30), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)
Query 6 PSPSPFCIFG 15
P PSP C G
Sbjct 22 PGPSPQCCGG 31
> PPepDB_1533
Length=93
Score = 16.2 bits (30), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)
Query 6 PSPSPFCIFG 15
P PSP C G
Sbjct 22 PGPSPQCCGG 31
> PPepDB_3864
Length=93
Score = 16.2 bits (30), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)
Query 6 PSPSPFCIFG 15
P PSP C G
Sbjct 22 PGPSPQCCGG 31
Lambda K H a alpha
0.328 0.146 0.511 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4249944
Query= ORF9_CoMIRGH063:234:187 unnamed protein product
Length=15
***** No hits found *****
Lambda K H a alpha
0.338 0.147 0.453 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3541620
Query= ORF10_CoMIRGH063:144:109 unnamed protein product
Length=11
***** No hits found *****
Lambda K H a alpha
0.342 0.158 0.471 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2597188
Query= ORF11_CoMIRGH063:81:1 unnamed protein product, partial
Length=27
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_1298 17.3 8.1
PPepDB_1297 17.3 8.1
> PPepDB_1298
Length=255
Score = 17.3 bits (33), Expect = 8.1, Method: Composition-based stats.
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 0/20 (0%)
Query 7 SNSTLTLAFLHIRLYTLMPY 26
++STLTL+F + L + Y
Sbjct 9 ASSTLTLSFTVLLLASTGSY 28
> PPepDB_1297
Length=255
Score = 17.3 bits (33), Expect = 8.1, Method: Composition-based stats.
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 0/20 (0%)
Query 7 SNSTLTLAFLHIRLYTLMPY 26
++STLTL+F + L + Y
Sbjct 9 ASSTLTLSFTVLLLASTGSY 28
Lambda K H a alpha
0.343 0.150 0.459 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 6038760
Database: PPepDB
Posted date: Dec 23, 2019 9:34 PM
Number of letters in database: 236,108
Number of sequences in database: 3,848
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40