Database: PPepDB
3,848 sequences; 236,108 total letters
Query= ORF1_CoMIRGB094:26:70 unnamed protein product, partial
Length=15
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_2246 17.3 3.6
> PPepDB_2246
Length=77
Score = 17.3 bits (33), Expect = 3.6, Method: Composition-based stats.
Identities = 7/11 (64%), Positives = 9/11 (82%), Gaps = 0/11 (0%)
Query 1 MIFSLILISAI 11
M FS+ LISA+
Sbjct 1 MKFSMRLISAV 11
Lambda K H a alpha
0.338 0.151 0.416 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3541620
Query= ORF2_CoMIRGB094:48:1 unnamed protein product, partial
Length=16
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_1422 17.3 3.2
PPepDB_1354 16.9 5.0
PPepDB_1353 16.9 5.0
PPepDB_606 16.5 5.5
PPepDB_916 16.5 6.6
PPepDB_905 16.5 6.6
PPepDB_797 16.5 6.6
PPepDB_1411 16.5 6.6
PPepDB_1368 16.5 6.6
PPepDB_1069 16.5 6.6
PPepDB_1068 16.5 6.6
PPepDB_1067 16.5 6.6
PPepDB_1053 16.5 6.6
PPepDB_1058 16.5 6.6
PPepDB_1270 16.5 6.6
PPepDB_1377 16.5 6.6
PPepDB_1376 16.5 6.6
PPepDB_1375 16.5 6.6
PPepDB_1303 16.5 6.6
PPepDB_1416 16.5 6.6
PPepDB_1137 16.5 6.6
PPepDB_1044 16.5 6.6
PPepDB_1267 16.2 8.9
PPepDB_1289 16.2 8.9
> PPepDB_1422
Length=255
Score = 17.3 bits (33), Expect = 3.2, Method: Composition-based stats.
Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)
Query 9 HGAIPP 14
HGA PP
Sbjct 110 HGAAPP 115
> PPepDB_1354
Length=255
Score = 16.9 bits (32), Expect = 5.0, Method: Composition-based stats.
Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)
Query 9 HGAIPP 14
HGA PP
Sbjct 114 HGAKPP 119
> PPepDB_1353
Length=255
Score = 16.9 bits (32), Expect = 5.0, Method: Composition-based stats.
Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)
Query 9 HGAIPP 14
HGA PP
Sbjct 113 HGAKPP 118
> PPepDB_606
Length=221
Score = 16.5 bits (31), Expect = 5.5, Method: Composition-based stats.
Identities = 5/6 (83%), Positives = 6/6 (100%), Gaps = 0/6 (0%)
Query 9 HGAIPP 14
+GAIPP
Sbjct 81 NGAIPP 86
> PPepDB_916
Length=255
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 111 GAIPP 115
> PPepDB_905
Length=255
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 122 GAIPP 126
> PPepDB_797
Length=255
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 110 GAIPP 114
> PPepDB_1411
Length=255
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 124 GAIPP 128
> PPepDB_1368
Length=255
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 111 GAIPP 115
> PPepDB_1069
Length=255
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 107 GAIPP 111
> PPepDB_1068
Length=255
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 107 GAIPP 111
> PPepDB_1067
Length=255
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 111 GAIPP 115
> PPepDB_1053
Length=255
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 108 GAIPP 112
> PPepDB_1058
Length=253
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 106 GAIPP 110
> PPepDB_1270
Length=252
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 105 GAIPP 109
> PPepDB_1377
Length=248
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 109 GAIPP 113
> PPepDB_1376
Length=248
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 109 GAIPP 113
> PPepDB_1375
Length=248
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 109 GAIPP 113
> PPepDB_1303
Length=243
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 102 GAIPP 106
> PPepDB_1416
Length=242
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 103 GAIPP 107
> PPepDB_1137
Length=242
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 103 GAIPP 107
> PPepDB_1044
Length=217
Score = 16.5 bits (31), Expect = 6.6, Method: Composition-based stats.
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 10 GAIPP 14
GAIPP
Sbjct 93 GAIPP 97
> PPepDB_1267
Length=247
Score = 16.2 bits (30), Expect = 8.9, Method: Composition-based stats.
Identities = 4/6 (67%), Positives = 6/6 (100%), Gaps = 0/6 (0%)
Query 9 HGAIPP 14
+GA+PP
Sbjct 105 NGAVPP 110
> PPepDB_1289
Length=246
Score = 16.2 bits (30), Expect = 8.9, Method: Composition-based stats.
Identities = 4/6 (67%), Positives = 6/6 (100%), Gaps = 0/6 (0%)
Query 9 HGAIPP 14
+GA+PP
Sbjct 106 NGAVPP 111
Lambda K H a alpha
0.333 0.154 0.464 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3777728
Query= ORF3_CoMIRGB094:61:5 unnamed protein product
Length=18
Score E
Sequences producing significant alignments: (Bits) Value
PPepDB_2147 16.5 6.0
> PPepDB_2147
Length=37
Score = 16.5 bits (31), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)
Query 10 EDHPWRY 16
ED PWR
Sbjct 16 EDEPWRV 22
Lambda K H a alpha
0.306 0.123 0.409 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4249944
Database: PPepDB
Posted date: Dec 23, 2019 9:34 PM
Number of letters in database: 236,108
Number of sequences in database: 3,848
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40