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  • miRNA family
    • MIR10515
    • MIR156
    • MIR157
    • MIR158
    • MIR159
    • MIR160
    • MIR161
    • MIR162
    • MIR163
    • MIR164
    • MIR165
    • MIR166
    • MIR167
    • MIR168
    • MIR169
    • MIR170
    • MIR171
    • MIR172
    • MIR173
    • MIR1886
    • MIR1887
    • MIR1888
    • MIR2111
    • MIR2112
    • MIR2933
    • MIR2934
    • MIR2936
    • MIR2937
    • MIR2938
    • MIR2939
    • MIR319
    • MIR3434
    • MIR3440
    • MIR390
    • MIR391
    • MIR393
    • MIR3932
    • MIR3933
    • MIR394
    • MIR395
    • MIR396
    • MIR397
    • MIR398
    • MIR399
    • MIR400
    • MIR401
    • MIR402
    • MIR403
    • MIR404
    • MIR405
    • MIR406
    • MIR407
    • MIR408
    • MIR413
    • MIR414
    • MIR415
    • MIR416
    • MIR417
    • MIR418
    • MIR419
    • MIR420
    • MIR4221
    • MIR4227
    • MIR4228
    • MIR4239
    • MIR4240
    • MIR4243
    • MIR4245
    • MIR426
    • MIR447
    • MIR472
    • MIR5012
    • MIR5013
    • MIR5014
    • MIR5015
    • MIR5016
    • MIR5017
    • MIR5018
    • MIR5019
    • MIR5020
    • MIR5021
    • MIR5022
    • MIR5023
    • MIR5024
    • MIR5025
    • MIR5026
    • MIR5027
    • MIR5028
    • MIR5029
    • MIR5595
    • MIR5628
    • MIR5629
    • MIR5630
    • MIR5631
    • MIR5632
    • MIR5633
    • MIR5634
    • MIR5635
    • MIR5636
    • MIR5637
    • MIR5638
    • MIR5639
    • MIR5640
    • MIR5641
    • MIR5642
    • MIR5643
    • MIR5644
    • MIR5645
    • MIR5646
    • MIR5647
    • MIR5648
    • MIR5649
    • MIR5650
    • MIR5651
    • MIR5652
    • MIR5653
    • MIR5654
    • MIR5655
    • MIR5656
    • MIR5657
    • MIR5658
    • MIR5659
    • MIR566
    • MIR5660
    • MIR5662
    • MIR5663
    • MIR5664
    • MIR5665
    • MIR5666
    • MIR5995
    • MIR5996
    • MIR5997
    • MIR5998
    • MIR5999
    • MIR771
    • MIR773
    • MIR774
    • MIR775
    • MIR776
    • MIR777
    • MIR778
    • MIR779
    • MIR780
    • MIR781
    • MIR782
    • MIR8121
    • MIR8165
    • MIR8166
    • MIR8167
    • MIR8168
    • MIR8169
    • MIR8170
    • MIR8171
    • MIR8172
    • MIR8173
    • MIR8174
    • MIR8175
    • MIR8176
    • MIR8177
    • MIR8178
    • MIR8179
    • MIR8180
    • MIR8181
    • MIR8182
    • MIR8183
    • MIR8184
    • MIR822
    • MIR823
    • MIR824
    • MIR825
    • MIR826
    • MIR827
    • MIR828
    • MIR829
    • MIR830
    • MIR831
    • MIR832
    • MIR833
    • MIR834
    • MIR835
    • MIR836
    • MIR837
    • MIR838
    • MIR839
    • MIR840
    • MIR841
    • MIR842
    • MIR843
    • MIR844
    • MIR845
    • MIR846
    • MIR847
    • MIR848
    • MIR849
    • MIR850
    • MIR851
    • MIR852
    • MIR853
    • MIR854
    • MIR855
    • MIR856
    • MIR857
    • MIR858
    • MIR859
    • MIR860
    • MIR861
    • MIR862
    • MIR863
    • MIR864
    • MIR865
    • MIR866
    • MIR867
    • MIR868
    • MIR869
    • MIR870

  • Tissue type
    • Flower
    • Leaf
    • Root
    • Seed
    • Shoot
    • Whole Plant

  • Developmental Stage type
    • 10 days old_leaf
    • 10 days old_root
    • 10 days old_seedling
    • 10 days old_shoot
    • 11-15 days old_whole
    • 11 days old_seedling
    • 12 days old_seedling
    • 13 days old_root
    • 13 days old_seedling
    • 14 days old_callus
    • 14 days old_leaf
    • 14 days old_root
    • 14 days old_seed
    • 14 days old_seedling
    • 14 days old_shoot
    • 1-5 days old_leaf
    • 15 days old_root
    • 15 days old_seedling
    • 15 days old_shoot
    • 1-5 days old_whole
    • 16-20 days old_whole
    • 16 days old_shoot
    • 17-18 days old_root
    • 17 days old_flower
    • 17 days old_root
    • 18 days old_leaf
    • 1 day old_seed
    • 20 days old_leaf
    • 20 days old_root
    • 20 days old_seedling
    • 20 days old_shoot
    • 20 leaf stage
    • 21-25 days old_whole
    • 21-35 days old_seedling
    • 21 days old_flower
    • 21 days old_leaf
    • 21 days old_root
    • 21 days old_seedling
    • 22 days old_seedling
    • 25 days old_leaf
    • 25 days old_root
    • 26-30 days old_whole
    • 27 days old_leaf
    • 28-35 days old_leaf
    • 28 days old_cells
    • 28 days old_flower
    • 28 days old_leaf
    • 28 days old_seedling
    • 28 days old_shoot
    • 2 days old_seed
    • 30 days old_leaf
    • 35-42 days old_leaf
    • 35 days old_flower
    • 35 days old_leaf
    • 35 days old_root
    • 35 days old_seedling
    • 35 days old_shoot
    • 3 days old_root
    • 3 days old_seed
    • 3 days old_shoot
    • 40 days old_leaf
    • 42-56 days old_leaf
    • 42 days old_flower
    • 42 days old_leaf
    • 42 days old_root
    • 45 days old_leaf
    • 45 days old_shoot
    • 49 days old_leaf
    • 49 days old_seed
    • 49 days old_seedling
    • 4 days old_seed
    • 4 days old_seedling
    • 4dpi_root
    • 5-10 days old_whole
    • 56 days old_seed
    • 5 day post-fertilization_leaf
    • 5 days old_root
    • 5 days old_seed
    • 5 days old_seedling
    • 5 days old_shoot
    • 60 days old_leaf
    • 6 days after pollination_seed
    • 6 days old_leaf
    • 6 days old_seed
    • 7 days old_leaf
    • 7 days old_root
    • 7 days old_seed
    • 7 days old_seedling
    • 8 days old_root
    • 8 days old_seed
    • 8 days old_seedling
    • 8 days old_shoot
    • 9 days old_root
    • 9 days old_seed
    • After ripening_seed
    • Before bolting_leaf
    • Bent cotyledon embryos
    • Bicellular_pollen
    • Bolting_leaf
    • Bolting_shoot
    • Bolting_whole
    • Delayed flowering
    • Dry seed
    • Early heart embryos
    • Early senescence_leaf
    • Early torpedo embryos
    • First flower opening_leaf
    • FL.02 1/2 of flowers open stage
    • Flowering stage_seed
    • Flowering stage_shoot
    • Freshly harvested_seed
    • Germinating seed
    • Globular embryos
    • Late heart embryos
    • Late senescence_leaf
    • Late torpedo embryos
    • LP.06 six Leaf visible
    • Mature green embryos
    • Mature_leaf
    • Mature_pollen
    • Mature_shoot
    • Mature_whole
    • Mixed stage_flower
    • Preglobular embryos (8-cell/16-cell)
    • Rosette_leaf
    • Rosette_root
    • Seedling
    • Seedling_leaf
    • Seedling_root
    • Stage 1-12_flower
    • Stage 1-12_leaf
    • Stage 1-12_whole
    • Stage 5_leaf
    • Tricellular_pollen
    • Two leaf stage
    • Two leaf stage_seedling
    • Unicellular
    • Unopened floral bud
    • Vegetative_root
    • Vegetative_shoot
    • Young_flower
    • Young_leaf

  • Experimental Condition
    • 1 µM epibrassinolide (epiBL) for 90 min
    • 2 hours of 5 mM KNO3
    • 430 ± 50ppm CO2 concentration
    • 5µM thermospermine
    • 810 ± 50ppm CO2 concentration
    • ABA medium
    • affinity-purified FLAG-AGO1
    • affinity-purified FLAG-AGO2
    • affinity-purified FLAG-AGO3
    • affinity-purified FLAG-AGO4
    • Air
    • Alternaria brassicicola
    • As(III)
    • Botrytis cinerea
    • Brassinosteroid
    • Carbon deficiency
    • Cold
    • Control
    • Copper deficiency
    • Copper excess
    • Cucumber Mosaic Virus
    • Cuscuta pentagona
    • Dark
    • DEX treatment
    • Drought
    • Ethylene for 4hrs
    • Flg22
    • Flg22/UV-B
    • Heat
    • Heterodera schachtii
    • Hyaloperonospora arabidopsidis
    • Iron deficiency
    • Iron excess
    • Jasmonate (JA)
    • Light
    • Low nitrate
    • LS+As(III)
    • Mannitol
    • Meloidogyne javanica
    • Methyl Jasmonate
    • Mock
    • MS medium
    • Nitrogen deficiency
    • Norflurazon
    • Oilseed Rape Mosaic Virus
    • Osmotic
    • Oxygen deficiency
    • Phosphate deficient
    • Phosphate sufficient
    • Phytophthora capsici
    • Pseudomonas syringae
    • Ralstonia solanacearum
    • Room temperature
    • Salt
    • Salt/submergence
    • Sclerotinia sclerotiorum
    • Sound 10KHz/Ralstonia solanacearum
    • Stratification
    • Submergence
    • Sulfur deficiency
    • Tobacco Mosaic Virus
    • Tobacco Rattle Virus
    • Total lysate
    • Turnip Crinkle Virus
    • Turnip Mosaic Virus
    • Turnip vein-clearing virus
    • TuYVs81
    • UV

  • Genotype
    • (23b6/35S-RTL1#11T1)
    • 35S:AtAMT1;1 transgenic
    • 35S-RICE1 D52A
    • 3ab
    • 4x Col
    • 4x nrpd1a (Col)
    • 5a
    • aar2-1
    • abh1-1
    • Additional point mutation in RDR6-tt19-8 background
    • ago1
    • AGO10 OE
    • AGO10 OE 4mAGO1
    • AGO10 overexpression
    • ago1-11
    • ago1-18
    • ago1-27
    • ago1-3
    • ago1-36
    • ago1-3 FLAG-AGO1D762A
    • ago1-3/+ FLAG-AGO1D762A
    • ago1-3 FLAG-AGO1E803A
    • ago1-3 FLAG-AGO1H988F
    • ago1-42
    • ago1hen1
    • AGO1sup19
    • ago2-1
    • ago2-1;PAGO2-HF-AGO2
    • ago3-2;PAGO3-FM-AGO3
    • ago4
    • ago4-1
    • ago4-4
    • ago4-4/6-2/9-1
    • ago4-4/6-2/9-1/AGO4-D742A
    • ago4-4/6-2/9-1/wtAGO4
    • ago4-4/AGO4-D742A
    • ago4-4/wtAGO4
    • ago4 dcl2/3/4
    • ago6
    • aly1-2
    • amiR-PAG1
    • amiR-SUL
    • amiR-SUL snc1-1
    • amiR-SUL sup-B65
    • aos
    • arid2-/-arid3-/-arid4-/-
    • arp6 knock out
    • At-CHS silenced
    • AtPAP2-
    • atxr
    • atxr5,6
    • cbp20
    • cbp80
    • cbp80_atxr
    • cdc5-1
    • CDF2
    • clasy1
    • clf-29 lhp1-4
    • clsy1-10
    • clsy1-7
    • clsy1-7,2-1
    • clsy1-7,2-1,3-1,4-1
    • clsy1-7,2-2
    • clsy1-7,2-2,3-1,4-1
    • clsy1-7,3-1
    • clsy1-7,4-1
    • clsy2-1
    • clsy2-2
    • clsy2-2,3-1
    • clsy2-2,4-1
    • clsy3-1
    • clsy3-1,4-1
    • clsy3-2
    • clsy3-2,4-2
    • clsy4-1
    • clsy4-2
    • cmt2-7
    • cmt3-11
    • coi1
    • Col-0
    • Col-0 female X Cvi male
    • Col-0 female X Ler male
    • Col female x Col male
    • Col female x Ler male
    • ColxLer
    • cpr1 aba1
    • crh6-3 (eco. Columbia)
    • crt1-4 (eco. Columbia)
    • Cvi female X Col-0 male
    • Cvi female X Cvi male
    • dcl1-7
    • DCL1 homozygous
    • DCL1 mutant
    • dcl2
    • dcl2-1
    • dcl2-1/dcl4-2
    • dcl2/3
    • dcl2/3/4
    • dcl 234 nrpd1
    • dcl2/4
    • dcl2/dcl4
    • dcl3
    • dcl3/4
    • dcl3/nrpd1
    • dcl3/rdr2
    • dcl4-2
    • dcl4-2 expressing cytosplasmic DCL4 from Ubq10 promoter
    • dcl4-2 expressing nuclear DCL4 from Ubq10 promoter
    • dcl4-2 rdr6-11 double
    • dcl4 rdr6 (Col)
    • dcp2
    • dcp2 and rdr6 double
    • DDB2-FLAG
    • ddc
    • ddl-1
    • ddm1
    • ddm1-2 +/-
    • ddm1-2
    • ddm1_2 dcl1_11
    • ddm1-2 rdr6-15
    • ddm1-ago6
    • ddm1-dcl3
    • ddm1-pol4-rdr6
    • ddm1 pol IV
    • ddm1 pol IV rdr6
    • ddm1 pol V
    • ddm1 rdr2
    • ddm1 rdr6
    • defected in RNA Polymerase II-transcribed trigger for generating silencing siRNA for RdDM, which is also defected in RNA Polymerase IV-dependent RdDM
    • defected in RNA polymerase II-transcribed trigger for generating silencing siRNA for RdDM, which still partially silences the Target (T) locus
    • defected in RNA polymerase II-transcribed trigger for generating silencing siRNA for RdDM, without the Target (T) locus
    • DG14
    • dms3-1
    • dms4-1
    • drb1-1 drb2-1 double
    • drb1-1 drb4-1 double
    • drb1-1 single
    • drb2-1
    • drb2-1 drb4-1 double
    • drb2-1 single
    • drb3-1 drb5-1 double
    • drb4
    • drb4-1
    • drb4-1 single
    • drb7.2
    • drd1-1
    • drm1/2
    • drm1-2,2-2
    • drm2-2
    • drm3-1
    • dtf1
    • dxo1-2
    • ein5-1 ski2-3
    • ein5-6
    • ein5-6 abh1-1
    • Empty vector control
    • epcr1-/-epcr2-/-
    • farnasyltransferase beta deletion
    • frg1/2
    • frg1 to frg5
    • HA-AGO10-DAH(ago2-1)
    • HA-AGO10-DDH
    • HA-AGO1-DAH
    • HA-AGO1-DAH(ago2-1)
    • HA-AGO2-DAD(ago2-1)
    • had-/-
    • hda6-/-
    • hen1-1
    • hen1-2
    • hen1-2/heso1-2
    • hen1-2/heso1-2/urt1-3
    • hen1-8
    • hen1-8 heso1-1
    • hen1-8 mee44
    • hen1-8 ntp10-1
    • hen1-8 ntp2-1
    • hen1-8 ntp4-1
    • hen1-8 ntp5-1
    • hen1-8 ntp6-1
    • hen1-8 ntp7-1
    • hen1-8 ntp8-1
    • hen1-8 urt1-1
    • hen1-9/heso1-1
    • heso1-1
    • heso1-1/hen1-8
    • heso-1-2
    • heso1-2/utr1-3
    • His-FLAG-AGO10 transgenic
    • hyl1
    • hyl1-2
    • hyl1-2_hen2-4
    • hyl1-2_sop1-5
    • hyl1_atxr
    • ilp1 ablation
    • IWR1-type transcription factor , dms4
    • iyo-4
    • J2/J3 deletion, with transgenic J3C417S
    • J2/J3 deletion, with transgenic wt J3
    • jmj14-1
    • jmj14-1 ldl1-2 ldl2
    • ldl1-2 ldl2
    • Ler female x 4N Col male
    • Ler female x 4N Col nrpd1 male
    • Ler female X Col-0 male
    • Ler female x Ler male
    • Ler female X Ler male
    • Ler x Col
    • mac7-1
    • met1
    • met1-3
    • MET1-3wt
    • miR1507 overexpression
    • miR2109 overexpression
    • miR2188a overexpression
    • miR2188b overexpression
    • miR2188c overexpression
    • miR472OE
    • MSH1 +/+
    • msh1 -/- S1
    • msh1 -/- S2
    • nrpb2
    • nrpb/d/e11-1
    • nrpd1
    • nrpd1-3
    • nrpd1-4
    • nrpd1a
    • nrpd1a-3
    • nrpd1a-4 (Pol IV)
    • nrpd1a-4 (PolIV )
    • nrpd1a (Col)
    • nrpd1a (Salk_583051)
    • nrpd1b-1 (Pol V)
    • nrpd1nrpe1 double
    • NRPD1_ZF
    • nrp(d/e)2
    • nrpe1-/-
    • nrpe1-11
    • nrpe1-12
    • overexpressing RPL18
    • Overexpression line 21
    • Overexpression line 7
    • pAGO1:HA-AGO1
    • pAP1:AP1:GR ap1 cal
    • parg1-1
    • parp1parp2
    • pistillata (Ler) x 4x Col
    • pistillata (Ler) x 4x nrpd1a (Col)
    • pistillata (Ler) x nrpd1a (Col)
    • pkl-1
    • pLAT52::DsRed
    • pMGH3::RTL1-Myc
    • pol4
    • pol IV
    • pol IV rdr6
    • pol V
    • pp4r3a-1
    • pp4r3a-2
    • prl1prl2
    • ProAtUBQ10:AtAMT1;1-ORF transgenic
    • PSR2-5
    • qqt2-2
    • rack1abc
    • rdd
    • rdm1-4
    • rdr1
    • rdr/1/2/6
    • rdr1/2/6
    • rdr2
    • rdr2-1
    • rdr2 dcl2/3/4
    • rdr6
    • rdr6-11
    • rdr6-11 ein5-1 ski2-3
    • rdr6-15
    • ros1
    • ros1/nrpd1 double
    • RPF2-nad6
    • rrp6l1
    • rrp6l1-2
    • RTL1 with 35S promoter
    • RTL1 with 35S promoter and dcl2 dcl3 dcl4 triple
    • rtl2
    • RTL2 with 35S promoter
    • RTL2 with 35S promoter and dcl2 dcl3 dcl4 triple
    • sac3b-3 (SALK 065672)
    • sac3b-7 (SALK 111245)
    • sde4-3
    • sdn1 sdn2 AGO10 OE
    • se
    • se_atxr
    • shh1-1
    • shh1-1,clsy1-7_
    • shh1-1,clsy1-7,2-1
    • shh1-1,clsy3-1,4-1
    • shh1-1 w/ shh1-3XMYC (D141A point )
    • shh1-1 w/ shh1-3XMYC (F162AF165A point )
    • shh1-1 w/ shh1-3XMYC (wild-type protein)
    • shh1-1 w/ shh1-3XMYC (Y140A point )
    • shh1-1 w/ shh1-3XMYC (Y212A point )
    • shy43
    • SKI2
    • SKI2 and RDR6
    • sma1-1
    • smc4
    • snrk2.2/3/6
    • sov (aka Col-0)
    • spo11-1-1
    • spt5l-1
    • stv-1
    • suvh2 suvh9
    • suvh4,5,6
    • suvr2
    • T-DNA insertion in TT19 (AT5G17220) under Col-0 background
    • tgh-1
    • top1a-2
    • transgenic 35S::MIR164AC24
    • transgenic 35S::MIR164ACol-0
    • triple homozygous with dcl2-1, dcl3-1, dcl4-2t alleles
    • urt1 (Salk_087647C)
    • vcs-6
    • vcs-6 and rdr6 double
    • vcs sov (aka vcs-7)
    • VCS SOV (Col-0 [SOV-L.er])
    • vcs (vcs-7 [SOV-L.er])
    • WT
    • xrn3-8













© 2023 National Institute of Plant Genome Research | Dr.Shailesh Kumar