85102_PtRNAdb chr-III.trna10-Gln-TTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 10 26276790 26276861 Gln TTG 0 0 74.2 54.70 19.50 Inf Gln 105.6 Phanerogamae -NA- Dicot GGTTCCATGGTGTAGTGGTtAGCACTCTGGACTTTGAATCCAGCGaCCTGGGTTCGACTCCCGGTGGGACCT 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. tttttttgttccaaATTGTAGGTGTGTATTGAATATTACTCTGTTAAGCATTACTTATAATTTCTGATTGCAAGCTACATGAGCCCCATCACCATCAACG GTTCAATTCTCCTTTTCAAGTTCTCAAAGAGTACTGGACCAGGGTTCCAGTAATGGATCTCATTTGCCTCTTGTTTATGGCCCAGAAAGATAAAACATTT + 85103_PtRNAdb chr-III.trna11-Ser-AGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 11 26690984 26691065 Ser AGA 0 0 61.3 38.70 22.60 Inf Ser 87.0 Phanerogamae -NA- Dicot GTGGCCGTGCCGGAGTGGTtATCGGGCATGACTAGAAATCATGTGGGCTCAGCCCGCGACGGTTCGAATCCTGCCGGTCACG 82 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.>>>>...<<<<..>..>>.......<<..<<<<<<<<. ACACGTGTTTCCCAGGCTTGCGGAAGAGGTACGTATTATGGCGAATTATAATGTTAATAGTGATTTAATTATCTAACCACGGACGTCACTCTCAAATCAG GCTTTTGTTGTCCCAGCTCAAATTTCTTCACGAACCCCAGCCCTTTACTTGGttttaataaataaaccaAGTCCCGAGCACATCACTGAAGGTCCTGTTC + 85104_PtRNAdb chr-III.trna12-Glu-CTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 12 26863445 26863517 Glu CTC 0 0 79.2 53.50 25.70 Inf Glu 98.6 Phanerogamae -NA- Dicot TCCGTTGTAGTCTAGTTGGTtAGGATATTCGGCTCTCACCCGAAAGaCCCGGGTTCAAGTCCCGGCAACGGAA 73 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. ATATGGATTTTGCTGTCACTTTGGATTGACAATATTTTCAGATTCAAATACGtaaactttaattaaaaataaaaattgattttagagTCTTGATGGGTAA tttttttaataccTGCTAGATTCACAGcaaataattttggaatttcATCTTTGCTATCTGATTCATCAATATGGGATAGGcgaattttgtttcatttatt + 85105_PtRNAdb chr-III.trna13-Val-AAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 13 28418471 28418544 Val AAC 0 0 49.6 30.50 19.10 Inf Val 56.8 Phanerogamae -NA- Dicot GGCGTCGTGGTGGTGTGGGTtATCACGTCAGTCTAACACACTGAAGGgCTCCGGTTTGACTCCGGGTGACGCCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GATGCCATTTAtcatagttttattttatttggccCTGATGTCAAAGACAAGTAAGAATAGCCAATCACAGGAGCCGTTACGGACGCCATTAAAAGAGCAA tttataatagttttttttaCCTTAAGATCACATGACCCGTTTACAGACGGGATGAAAGTGATTGccttgtaaattttttggcaTGATATGCTTGAAAAGG + 85106_PtRNAdb chr-III.trna14-Ala-CGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 14 29877383 29877455 Ala CGC 0 0 64.5 43.40 21.10 Inf Ala 97.4 Phanerogamae -NA- Dicot GGGGGTGTAGCTCAtATGGTAGAGCGCTCGCTTCGCATGCGAGAGGcACGGGGTTCGATTCCCTGCACCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GTAAAATTTGCAAATGAACCAATCCGAATTGCCATTCTAGGTCTGGCTAACCTTGCAGTACGtgaatttaaatattcaattgCTTTTGACAGAAGTATGC CTGTGGATTTTAGTGTGTAACGATAAACGCGGCGTTCATATGAGAAAAGAGATCAACAAAAACGCAGCGTTTTAATGCAACGATAAACAGagacgccaag + 85107_PtRNAdb chr-III.trna15-Gln-CTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 15 29959004 29959075 Gln CTG 0 0 71.8 47.10 24.70 Inf Gln 103.5 Phanerogamae -NA- Dicot GGTTCCATGGTCTAGCGGTtAGGACATTGGACTCTGAATCCAGTAaCCCGAGTTCAAATCTCGGTGGAACCT 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. CAATTCTTAGGTGGTAAGTGCTTGCTGCTAAATGCCGTAGGCTACAACCGCACACAAAATCATAGACTTGAGATCTAATATTTCGGAGATGATATCAACC taattttgtttttcaacttgggattaaaattttgttccaACTTAAAATTCTGTGATCTGGCTTCTGCAAGCTACCTGTTTTTCTACTtgggattaaaatt + 85108_PtRNAdb chr-III.trna16-Arg-TCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 16 30139073 30139145 Arg TCT 0 0 67.9 47.60 20.30 Inf Arg 87.1 Phanerogamae -NA- Dicot GCACCCATGGCCTAACGGAtAAGGCGCCTGACTTCTAATCAGGCGAtTGTGGGTTCGAGTCCCACTGGGTGTG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTTAAGGTCTCTATATCTTCTTTTGGTAGAACCTGTAATgcaattcatcaaaattaaatctcagGTATAAAAAGGAATGATGCTGTTTCGATAACAAGAA CTATGCTATTCCACTTTCACATGACAGAAAATTTTAggtatttaattaaaattacttgaaagGAGTGAAAATTTGTCATTACCTGCATTCCTCCCTTCTC + 85109_PtRNAdb chr-III.trna17-Met-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 17 30506693 30506776 Met CAT 30506729 30506740 44.1 38.50 5.60 Inf Met 75.8 Phanerogamae -NA- Dicot GGTGGTGGCGCAGTTGGCtAGCGCGTAGGTCTCATAATCCTGAGGtCGAGAGTTCGAGCCTCACTCACGCCA 72 >>>>>..>>>>.........<<<<.>>>>.....................<<<<.....>.>>>.......<<<.<<<<<..<. tcattaaatgaaaaaatcgAACAAATGTTATTTCAAATTATCGTTCATTTTGACagaaaaaaatcttttaaatttgacttttgtttaaatttcatTCAGA TATCTAGTTTTGGTTTCCTCTCTACAGACAAAATGCAGTTTGGATTATGATTATGCTTTTATAGTTAATTACCAActatacatacatatacatcCACATA + 85110_PtRNAdb chr-III.trna18-Met-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 18 31366498 31366584 Met CAT 31366536 31366548 64.2 40.70 23.50 Inf Met 104.0 Phanerogamae -NA- Dicot GGGGTGGTGGCGCAGTTGGCtAGCGCGTAGGTCTCATAATCCTGAGGtCGAGAGTTCGAGCCTCTCTCACCCCA 74 >>>>>>>..>>>>.........<<<<.>>>>......................<<<<.....>>>>>.......<<<<<<<<<<<<. ATAACCAAATCAACCAAATGACTTTATGCCACGTGCAATCGTCCTTGCTCTGCGACTCTCTCTATGATTAATATAATCTTTGAAACAACACCGTCCACAT ttgtttttttcttttaagaatattatttttgaagtTGACAAAGCAAAGCAAGCCCATGAAAAGCCTTGAACTATTCTCTCTAGCGATAAGTCTTTGATTT + 85111_PtRNAdb chr-III.trna19-iMet-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 19 31784904 31784975 iMet CAT 0 0 58.3 28.10 30.20 Inf iMet 118.7 Phanerogamae -NA- Dicot ATCAGAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGtCCCAGGATCGAAACCTGGCTCTGATA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AATTCCTAATATGGTTATTTCCTGctcaaattttattatgataGCAATGTGCAACGCAAGTAAGGACTGAGAAAGAATTTGTTCGTTTCAGTAGCAACAA TTCCAGAGAAGGcttcctaatttttttttgggatttCAAGTTGTGGGCCTAGGCTGGGCTACCCATCTTCAGATTTGGTTTGCGCGTGCAATTGCACTGG + 85112_PtRNAdb chr-III.trna1-Leu-TAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 1 649503 649582 Leu TAG 0 0 69.5 48.50 21.00 Inf Leu 111.5 Phanerogamae -NA- Dicot GACAGTTTGGCCGAGTGGTctAAGGCGCCAGATTTAGGCTCTGGTccgaaaGGgCGTGGGTTCAAATCCCACAGCTGTCA 80 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. AAGGTTTTCAATCAGAAAGGCAATTTTCATGCAACCAAATATTATTTACTTTCACAGTAGTAACAAGAGTTATTGTCTTAATATGCCATTTGCAGATAAA aattttttaataattaattaaacaagaAAAGTAATCATTTGGTTCCAACAAAAGAATTATTTCCTTATTGAGGAGTAACAAGAGGAGAAGCAGTAATAAA + 85113_PtRNAdb chr-III.trna20-Trp-CCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 20 32024066 32024137 Trp CCA 0 0 75.8 51.20 24.60 Inf Trp 105.6 Phanerogamae -NA- Dicot GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGtTGCGTGTTCGATTCACGTCGGGTTCA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GTAATTAAGGATTCTATAAACAGGAAAAGAAAGGTTGGTTCCACCTTTTTTTGTAAATCAAAGTGCTTATAAAAATAAGCCAGCACAATTCACCGCCAGT AAATCCCGATCCTAACCGGATCCAAATATATTTTTGCCATTCTCTTTTGCAACCAAGTCGGCCTTTTTCAGTTGGAACTGCCTCGTTATGGTGTTGGCCT + 85114_PtRNAdb chr-III.trna21-Leu-TAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 21 34818567 34818649 Leu TAA 0 0 69.8 30.70 39.10 Inf Leu 91.0 Phanerogamae -NA- Dicot GCTGGTTTGCCCGAGAGGTtAAGGGGGAAGACTTAAGATCTTCTGTACATAAGTACGCATGGGTTCGAACCCCATAGCCAGCA 83 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. TTAGTCTGCAACCTATTCACTCTTTGAAGCTTCTATTAAGTTTATTGGATCTAACTGAGTGTAGCTGTCAGGTGACTGGATACAGCATCAAGCCGTAGAA AACTTTTGCAATCCCATGCTGCCAATTTTTTGCTTGATCGCCAAAACTACAGTCTAGCAAGGCCAAGGGAAATTCAACATATTTTTTAGTATATTCTTTC + 85115_PtRNAdb chr-III.trna22-Ala-CGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 22 35086735 35086807 Ala CGC 0 0 68.3 44.10 24.20 Inf Ala 99.2 Phanerogamae -NA- Dicot GGGGGTGTAGCTCAtATGGTAGAGCGCTCGCTTCGCATGCGAGAGGcACGGGGTTCGATTCCCCGCACCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CTGTCTTCTTTGTCCGATACCAAGTCtcttaaatatttgtttttggcCAGATGTGGAGTAAATTGCAGCAATTCTGAGTACGACCGCAGGCCAGCGTTAA ATTACTAATTTTAATGCGACCTTTTTCCTATCTTGTGGGCGATCACCTGTGACCTGTCAATGGGAATGATGCTTATCCTTTCATAAAACAACTATTTCCA + 85116_PtRNAdb chr-III.trna23-Gln-CTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 23 35163371 35163442 Gln CTG 0 0 76.4 49.50 26.90 Inf Gln 103.7 Phanerogamae -NA- Dicot GGTTCCATGGTCTAGTGGTcAGGACATTGGACTCTGAATCCAATAaCCCGAGTTCAAATCTCGGTGGAACCT 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. cttaaattaaattaattgtcGCTGCGAGTGATGTGGGTGTGTACTCATAAACCTATCTTGTTTATAAAGATTAGGTAAAGTTTCCAAAGCCGTTACCAAA ttattttttatatatttttattttagtcaTTCCCCTGCGCCTTGTCTCATTCTGGGCCTTACATTTTGCTTACAATGCTGCATCTCGGGGCTGTTATCCA + 85117_PtRNAdb chr-III.trna24-Gln-CTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 24 35165833 35165904 Gln CTG 0 0 74.3 49.60 24.70 Inf Gln 103.3 Phanerogamae -NA- Dicot GGTTCCATGGTCTAGTGGTcAGGACATTGGACTCTGAATCCAGTAaCCCGAGTTCAAATCTCGGTGGAACCT 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TCCATATAGTCGCAGTAGTACAATTACTCATACTCCAGGTGATGGAAGAATGAGGCATGGAAAAGCGACATTGATAAACTTTGCCTTGAGTGGCACAAAA ccttttttatttttctcggAATTAAAAAAGGAAGCAAATTTTTCCCAAATCAGATAAAACCATAAAACACAGCATCTTCGACCTTTCATCTCTCTCCCCA + 85118_PtRNAdb chr-III.trna25-Ser-TGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 25 35201754 35201835 Ser TGA 0 0 79.0 44.80 34.20 Inf Ser 116.0 Phanerogamae -NA- Dicot GTCGATATGTCCGAGTGGTtAAGGAGACAGACTTGAAATCTGTTGGGCACCGCCCGCGCAGGTTCGAACCCTGCTGTCGACG 82 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. AAGATCGATCGTAGATGGATAGCATAACACTCTAAACTAATCTTTAGATTTACAGAAATTGTACATCCATAACCAAAAAAGAATAGCTTATGAACATAAG CGAACCTGTTCTTTTTGGACTTTCAATTTTGAATCTTAATGTTTGCTGCAGATGATATACGAGAGCATGAAAGTGAGAGTGGAACACGTTGTTGAAACAG + 85119_PtRNAdb chr-III.trna26-Trp-CCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 26 35459783 35459854 Trp CCA 0 0 75.8 51.20 24.60 Inf Trp 105.6 Phanerogamae -NA- Dicot GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGtTGCGTGTTCGATTCACGTCGGGTTCA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CGTATAACAAGGATCAATCATGTTTCTTTCCCTCTTATTTTTGTGCGGGAATAAACATGAAGGACAAATTTCTACTTTCATAATAGACATATAAACCATC ATCCCCTAGAACTGAtccccaaattttttttttttaatatagttAAATCCCCCAAGCATATTTCCATATCAATTTTGGGCCAAATACAAACCTAATTTAG + 85120_PtRNAdb chr-III.trna27-Gln-TTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 27 35623511 35623582 Gln TTG 0 0 73.5 53.70 19.80 Inf Gln 104.8 Phanerogamae -NA- Dicot GGTTCTATGGTGTAGTGGTtAGCACTCTGGACTTTGAATCCAGCGaCCTGGGTTCGACTCCCGGTAGGACCT 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. CATCAAAGGGCATGTAGTTATTTTTGTGAGAAATAGCAATACAAGTTTAGTTGTTCATATCACTGAACTTCTTGAGGTTTACGTGCGTTGTGAACAACTT TCTTTTGgccatttcatgttttcacAGAAACGAATTGTATGTAGAATTTTCACAATAACGAATTGCATGTAGAAGCAACTACACAGAAAGAAAGCTTCTT + 85121_PtRNAdb chr-III.trna28-Gly-CCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 28 35364876 35364806 Gly CCC 0 0 66.3 29.50 36.80 Inf Gly 89.7 Phanerogamae -NA- Dicot GCGCATCTGGTGTAGTGGTATCATAGTACCCTCCCACGGTACTGaCCGGGGTTCGATTCCCCGGATGCGCA 71 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. GGCATTGTCTTGTTTCTTTGTCGGTAATTAATTACGATAATTACGGACCAAAGACATGTGTCATGTTGTAGATAAACATAGTATGTTCGAGGTTAACAAA AAAccaataatattttactattttgAAGATAAacgttaattttcttttacaaaGCGGCCAATTATGATCGTCTGATAATCATTTTTTCCACCTTATAATC - 85122_PtRNAdb chr-III.trna29-Cys-GCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 29 35175548 35175477 Cys GCA 0 0 82.1 59.90 22.20 Inf Cys 106.6 Phanerogamae -NA- Dicot GGGTCCATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCACCGGTTCGAACCCGGTTGGGCCCT 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TAAAGCGCTTGTATTcgaatcttctttttttaaaataaattcataaatagaTAGTACTGCCTTGTCTAGTAGATAAAATGTTCCCTGCCTGCCCATCAAA TCTtgtaattttccttttttcacaTTTCTATTAATTTCTACCCTTAAGCTCTTTCGTACAGTTAGGCCAAACTCACAACTATAAAACCCTAAGACATATG - 85123_PtRNAdb chr-III.trna30-iMet-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 30 34753668 34753597 iMet CAT 0 0 58.3 28.10 30.20 Inf iMet 118.7 Phanerogamae -NA- Dicot ATCAGAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGtCCCAGGATCGAAACCTGGCTCTGATA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GCTACAGAGCTGCACACTGATATAGGCCCAATCGAGGATTTTCTGGGCTTTTATGACTTGATAAACaccaaataattaatatctcAGCTTCCTTTCAACA GTAGAGTTGCTCGGCTGGTCATCACCTTTTTATCCCTTAGAGTTCTGAGCTGCTAGCTTTCCCTCGCCTTCATACATGAACATCATCTTCTCCATTATTT - 85124_PtRNAdb chr-III.trna31-Gly-TCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 31 34625024 34624953 Gly TCC 0 0 73.9 46.20 27.70 Inf Gly 85.6 Phanerogamae -NA- Dicot GCGTTTGTAGTCCAACGGTtAGGATAATTGCCTTCCAAGCAATAGaCCCGGGTTCGACTCCCGGCAAACGCA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. GTTGTTTTTGTAAGTGAAATGGAGCACTTGAAGACCGAGGACACGTACTAAAATTTTCTGGGCATTCGTTAGAAATGTGCTCTTCCTTTCTCATCAGCAT tttctctttttttaccTGAGCATGGAGGTAGATAGACCTGGACTTGTAACCTTGACCCACCATAGGGTCCTTTTTAGGGAATCGCGTGAGCATTTATTTA - 85125_PtRNAdb chr-III.trna32-Thr-TGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 32 34260537 34260466 Thr TGT 0 0 84.5 58.50 26.00 Inf Thr 95.0 Phanerogamae -NA- Dicot GCCCCTATAGCTCAGTGGTAGAGCGTCAGTCTTGTAAACTGAAGGtCCGTAGTTCGATCCTGCGTGGGGGCA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ATGCTTACACTTAAGATAGTAATGTATGAGATTATGTGGTGTACATAGATGAAACTAAGTGAAAAATTGCATGATGAGGGTTTACAATGCAAGCAGACAT TACTGGACTTTTTCTCTTTAGTagcaaattttgttttaaatgattaaaagaATCTTGATGGATCTTTATTCTTCTGATATTCACTTTCTGACAAAAGTGG - 85126_PtRNAdb chr-III.trna33-Val-CAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 33 34132432 34132359 Val CAC 0 0 82.4 54.40 28.00 Inf Val 103.7 Phanerogamae -NA- Dicot GTCTGGGTGGTGTAGTTGGTtATCACGCTAGTCTCACACACTAGAGGtCCCCGGTTCGAACCCGGGCTCAGACA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TGTGCGTTATCCTGCGATGGAGGTTGCCCAATATAGTATGAAAATGACTATGAGAATCATATTAGCAAGAATAAATAAGACTTTTGAGAAAACCATCAAC agattttatatttattttcttagatCAAATCTTAAAGAAGAAATTTGAGTAACGATTTTAacgaaatttcaaaatttgtagTTATCAGctaattaattag - 85127_PtRNAdb chr-III.trna35-Gly-TCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 35 33693323 33693252 Gly TCC 0 0 73.9 46.20 27.70 Inf Gly 85.6 Phanerogamae -NA- Dicot GCGTTTGTAGTCCAACGGTtAGGATAATTGCCTTCCAAGCAATAGaCCCGGGTTCGACTCCCGGCAAACGCA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. ATAAACCTTTTTCGATTGAATAATGCGGGCCGTGGGTTCTCATGTTTCTTTCTAAGTACCAAGTCAGAAGTTGAAACTTAGGTAAAAGAAATGGCACTCG ATCacatctatttttttctttttaccagAAAAGATGCTAAAAATTACTAAGTGAAAATAGTTATCtcaaaatgtattgatagtgGAAAGCAGCATTTTTC - 85128_PtRNAdb chr-III.trna36-Leu-AAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 36 33645746 33645666 Leu AAG 0 0 74.0 52.20 21.80 Inf Leu 110.4 Phanerogamae -NA- Dicot GTTGAGATGGCCGAGTTGGTctAAGGCGCCAGATTAAGGTTCTGGTccgaaaGGgCGTGGGTTCAAATCCCACTCTCAACA 81 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. AAGGCTTAGCCGCACTACTGCATTTAACATTCCCCtcacccaaaaagaaaagcgAACATCGTAACTCGCGCAAATAAAAAGCAAGATGCTTTGCAAACAA TAACTTTTACAACTTACTGTCCTGTCCTGCATActgaacatatttttaatgcttttaCAACTTTCTGTCCTGGTTTTGACTTGAAAACTCTAGGATGTTT - 85129_PtRNAdb chr-III.trna37-Val-AAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 37 33456780 33456707 Val AAC 0 0 72.9 48.60 24.30 Inf Val 93.8 Phanerogamae -NA- Dicot GGTGTCGTGGTGTAGTTGGTtATCACGTCAGTCTAACACACTGAAGGtCTCCGGTTCGAGTCCGGGCGACGCCA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GTTTTACTTCCTGTCTCGTTGTAGCTTTCTCGTAGCGAACAAACCAAAGTTGCTTTGGATTTATGTCAAATATTAAAGGTTAAAAGATGCGCCCAGCGAA TTTTTTGCGGTAGTAATAATACTTTTCTTTAGTGGCTTTTTCGTGTTGGATACTCAAACTGAAAATAATGGTCATTgatcaaatcaaacaatggCCAACT - 85130_PtRNAdb chr-III.trna38-Lys-CTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 38 33287200 33287128 Lys CTT 0 0 86.8 66.60 20.20 Inf Lys 107.7 Phanerogamae -NA- Dicot GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGtCGTGGGTTCGAGCCCCACGGTGGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TCTTTGCTTGTCGTGTACATTGATTTTGTGAGCGgtaatttattattgaacCTTTGTGTTACAAATCTCCAAAAGATGTGGTGATGACGTTTCATCAACT TTTCCATTTTTGTAAGAGGAAAGTATGAGTCAACACTAAAACATTCCAAACTTTCAACCCATTATGCCTGCTTAATTGTTCCTGAAGTTGGGTCTCTACC - 85131_PtRNAdb chr-III.trna39-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 39 32927037 32926967 Gly GCC 0 0 66.5 44.80 21.70 Inf Gly 94.4 Phanerogamae -NA- Dicot GCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGaCCCGGGTTCGATTCCCGGCTGGTGCA 71 >>>>>>>..>>.>.......<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TTGCGTagctcttattttttaaaaaaatctgaaGTGAGAACAaggaaatatattttatattcaaacCCCTGGGTTTTAACGGGTCGCCCGACAAGCAAAA gatgctttttcttttccatcaAACAATAAACAGTGGAATGGAGATTAGTGATGTCGACATCACCAGGGGAGCTCCTACCCAGTTGTCTTCTTTTCTTGTC - 85132_PtRNAdb chr-III.trna3-Ala-TGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 3 1553106 1553178 Ala TGC 0 0 70.0 45.30 24.70 Inf Ala 100.6 Phanerogamae -NA- Dicot GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGcACGGGGTTCGATCCCCCGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ATTAGTGAATTTTCAATTCGagtatttaaatttgaatgaaGGCAAATTGTTTTTGTTAATCACCAATCAGGATAAAAAGATGTTTCACCTCACATCAAGT tatttttgtcttttcctgCAAAACCAATGAAATTGGGCTGACGCTTAACCATTAATGAAACTATAGGAATCAAAGACCCAACCCTGCAAACAAGGTCGAG + 85133_PtRNAdb chr-III.trna40-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 40 32926111 32926041 Gly GCC 0 0 66.5 44.80 21.70 Inf Gly 94.4 Phanerogamae -NA- Dicot GCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGaCCCGGGTTCGATTCCCGGCTGGTGCA 71 >>>>>>>..>>.>.......<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. CACATCGAGCCATAAATGgtaattcaaaaaattcatgatttttttgaagagATTGGTTCATAGCACCATACTCTATTAACgctcaaaaaattcaaaaaat TTTGCATTTTGCATCTTTCTTGTATTCACCTCCAGTCAGTGATATAGTCAGCCATTAAAACCTCTAAAAATAATGACTGGGTACAAGCTTACAGAGTGAT - 85134_PtRNAdb chr-III.trna41-Pro-AGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 41 32524809 32524738 Pro AGG 0 0 58.0 25.80 32.20 Inf Pro 97.0 Phanerogamae -NA- Dicot GGGCATTGGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGAGTTCAATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AAACTTGATCAGTCATCAGAGGGATGCGGTAAAACTTCGGCCCAAAGAATTATCGAATGAAAAATTGCCAAGTGTCATACATAACTTGACTACCAAGTGA TCTCAAAATGTGAcgtttgttttcttttaatctcAACAGAATTGGTGTTCCATCAACTCACTgcttttttgcttttattacTCTAGAATCTCATCTCTAT - 85135_PtRNAdb chr-III.trna42-Cys-GCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 42 31520650 31520579 Cys GCA 0 0 82.1 59.90 22.20 Inf Cys 106.6 Phanerogamae -NA- Dicot GGGTCCATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCACCGGTTCGAACCCGGTTGGGCCCT 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ttttgaaacGCGAATTTTGGATCGCTGTTTGTAGGATAAAAGATTGAAAGTAAATGTGAATTAACCAATTACATAAATTTGCAACTTAAAAACTCTAACA TAATGAGATATCAATTTTCCCCACTTTTTGTTTGTGCGTGTCGtgcaatttcctttttttttgcgTAATAAACTAAAGTTATAGAAATTTGGTCACATCT - 85136_PtRNAdb chr-III.trna43-Leu-TAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 43 30279912 30279833 Leu TAG 0 0 69.5 48.50 21.00 Inf Leu 111.5 Phanerogamae -NA- Dicot GACAGTTTGGCCGAGTGGTctAAGGCGCCAGATTTAGGCTCTGGTccgaaaGGgCGTGGGTTCAAATCCCACAGCTGTCA 80 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. TTGTTTGGGTACAGATTAAGTACTCAGTTGACGAGCTTCAGGGAATCAACTCGGtgaaaaacaagttaaatatTCAATCTTTTGTTTCTCATCAACAAAA AagatggtttttttttttcatctaacTTGATAACCTTTAACTCATTATGATATGGGGCTCAAAATGTAGGGTATCTGGACTTGAATCCAACTTGATAACG - 85137_PtRNAdb chr-III.trna44-Gly-CCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 44 30115753 30115683 Gly CCC 0 0 66.0 29.20 36.80 Inf Gly 87.4 Phanerogamae -NA- Dicot GCGCATCTAGTGTAGTGGTATCATAGTACCCTCCCACGGTACTGaCCGGGGTTCGATTCCCCGGATGCGCA 71 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. GAAGAAGGAAGAGTTTGCCAGaggaagatttggagacaacCAGCATATCAACGTACTCTTCTTTTGACAAGCATTTTTTCCAACAACGAGTCGTGCACAA TTTCCCATTTTACAACAGTCCAAGCAATATGGTGTTTTACAAGACCGGGGTAACTGACGAGGACAGTAATGGTGGGTAAAGAGTAACCATAGTTCGGCTG - 85138_PtRNAdb chr-III.trna45-iMet-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 45 29506589 29506518 iMet CAT 0 0 57.5 26.90 30.60 Inf iMet 115.2 Phanerogamae -NA- Dicot ATCAAAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGtCCCAGGATCGAAACCTGGCTTTGATA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. tatttaattttacgtctctcaaaatttttaatttatttttcaatgaaGTGATATATTGTTCgtatatcaaatataattatttacaCCTACATCTCACCAA AAAAGCGGCTTCCAACGTTCAAAACTTTTGGgtcattcatttaaaataaaaatcaacacGACACCGTTCCTTGAACCTCCCGAACCTAGCATTTGATTGG - 85139_PtRNAdb chr-III.trna46-Leu-CAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 46 29075827 29075744 Leu CAA 0 0 81.0 54.60 26.40 Inf Leu 125.6 Phanerogamae -NA- Dicot GTCAGGATGGCCGAGTGGTctAAGGCGCCAGACTCAAGTTCTGGTCCTCGTGAGAGGgCGTGGGTTCAAATCCCACTTCTGACA 84 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.><.<<<...>>>>>.......<<<<<<<<<<<<. TTGTTCAAAGTTACAACTACATAAATTGAAATGTGTCATTCTGTAATGATCAACATTTACACGAGGAAAAGACACCACTGGGTTATGTCAACAAGCATCA GGTCTTTATATTTCTGAATTTTTTTGGGGCTGAATGGTAGATTGGCCCGTTTGCATGACATTCAGTCCAATTACCGAATTTTCTTCTACATTTGAGAATT - 85140_PtRNAdb chr-III.trna47-Cys-GCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 47 28824226 28824155 Cys GCA 0 0 82.1 59.90 22.20 Inf Cys 106.6 Phanerogamae -NA- Dicot GGGTCCATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCACCGGTTCGAACCCGGTTGGGCCCT 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GAAactgagaaagagaaaaaagaaccGGAGGGGGGAAGGTGACAAGGGTTATCAGGCTAACTCGAGcaaaatattttctataaGAGAGGTAGTGAAAGCT CAGTCCTAAGGGTTTCCCTTTTTTCGCTCTAAAGTCTAAACACGCTGATTTGTTTTGGGCCCATTAATGTGGGTAACCGACATCCTTTGTTTTAATTCAG - 85141_PtRNAdb chr-III.trna48-Asp-GTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 48 26432271 26432200 Asp GTC 0 0 69.8 46.80 23.00 Inf Asp 95.8 Phanerogamae -NA- Dicot GTCGTTGTAGTATAGTGGTgAGTATTCCCGCCTGTCACGCGGGTGaCCCGGGTTCGATCCCCGGCAACGGCG 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. tatcataacttaataatattatatattatataataaattttctatAAGCAGGTGAAGTTAGTGatacaaaacataaagttgGAAACCATCTCCCAAGCTT GTTTTCCATTTTGTCTCGTTTCCGGAACAGCGGGTGATAAACTGATAATTAATAATGAAGGAAAAAACTATAGGCTGTGAGACTGCCTGTGACAATGGCC - 85142_PtRNAdb chr-III.trna49-Ala-AGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 49 26046111 26046039 Ala AGC 0 0 63.4 38.20 25.20 Inf Ala 98.3 Phanerogamae -NA- Dicot GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGtACGGGGATCGATACCCCGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTGTGACTGTATCCTTTTTCATACCCCCGGCTGCTCGAGTCAACATTTTCCAGGAACTAGTCAATTcaactatttttctttgcaCTGACATCACCAACGT AAGATACTTTCAACCTGATGAGAAAAAGCAGGGGCCTGTTTCCTGTCAATGAGCGGGTCTCTCGTAAGAGTCAGGGAAATGGAACCCCATTGTTCTTGGG - 85143_PtRNAdb chr-III.trna4-Phe-GAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 4 1699632 1699704 Phe GAA 0 0 76.1 56.10 20.00 Inf Phe 104.4 Phanerogamae -NA- Dicot GCGGGGATAGCTCAGTTGGGAGAGCATCAGACTGAAGATCTGAAGGcCGCGTGTTCAATCCACGCTCACCGCA 73 >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. TATAAATGATAAAACTTATATTCCTTGTGGTCTAATAATGATCAAACCAAACAAATTCTTTGAGTAGACCCAAGTCCAGTTCTAGGTTGGTGCATAATTT CGCATCCTTGGGATTGAGGCTTGGAGTTGACTTATTACTTGGGAGGTTGGTCAAATTATACTTGGTGAAGGTGGAATATCCCATTTTTAGTGGAGGACAT + 85144_PtRNAdb chr-III.trna50-Thr-CGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 50 23632409 23632338 Thr CGT 0 0 79.1 57.50 21.60 Inf Thr 87.7 Phanerogamae -NA- Dicot GCCTTCGTAGCATAGTGGTAGTGCGTTCGCTTCGTAAGCGAAAGGtCGCGAGTTCGATCCTCGCCGGGGGCT 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CAAAAAGAGCATGCGCAAACGATAGCGAGAGATATGTTAGAATTGATATTTACCTATATAGTGGAAATATTGCAACAATACCCTTTACAGCATGGTGATA TCAACGGATGTTTTTGGGCCTAAGAAGAGGTTGCTTTAATAGGTTTTTTTGGGCCTAAGAAGAGGTTCGACTAGCTcggataatttttttgttttattga - 85145_PtRNAdb chr-III.trna51-Leu-CAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 51 21322589 21322509 Leu CAG 0 0 69.5 46.80 22.70 Inf Leu 109.7 Phanerogamae -NA- Dicot GTCAAGATGGCCGAGTTGGTctAAGGCGCCAGTTTCAGGTACTGGTccgaaaGGgCATGGGTTCGAATCCCATTCTTGACA 81 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. tttcttcttctgagACCAGGCTTTTGAATAAGCGCCAACACTTCAAATTTAAAGCTTTAGTGAGTACAACTAAAGAAAAACCAACCATGTAGTCAAAAAT aaaataaatatttattttaaatttgttttaaaatgtaaaaagttAATATTTACAGCTTTTTATCCACACTTCATTTGCAAACAAGCGATCAAAAATCTAC - 85146_PtRNAdb chr-III.trna52-Leu-AAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 52 21292273 21292193 Leu AAG 0 0 72.6 49.90 22.70 Inf Leu 108.7 Phanerogamae -NA- Dicot GTGGAGATGGCCGAGTTGGTctAAGGCGCCAGATTAAGGTTCTGGTccgaaaGGgCGTGGGTTCAAATCCCACTCTCCACA 81 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. CACATTCAGAAGCCAAAGGTAATTATGATAATGATTTAACAACGTAAAAGCTATCTGTAGACTTATAAATATAGAAACAAAATCAGATCATTACAAGGTG TTCGATATTTTTGGTCCCCAAAATACAAAATAGTATTGTGTCCAGAATTAATTAcgaatttcataattttttaaaaccacATTAATTACgaatttcttaa - 85147_PtRNAdb chr-III.trna53-Met-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 53 3921100 3921015 Met CAT 3921062 3921051 64.2 40.70 23.50 Inf Met 104.0 Phanerogamae -NA- Dicot GGGGTGGTGGCGCAGTTGGCtAGCGCGTAGGTCTCATAATCCTGAGGtCGAGAGTTCGAGCCTCTCTCACCCCA 74 >>>>>>>..>>>>.........<<<<.>>>>.....................<<<<.....>>>>>.......<<<<<<<<<<<<. GTCaatattttaacaatatttatttcaattttattattctttacaTTCATTCTCATAATTTTACATCAAGGTTATTAAATGGTTCATTCTTATCACCATT TGTCTAacgcttttcaaaaaaaaaaaatgttgtccAAATTGATTTATTAAGGTAACttttacacaatcacattaatatgttaataatatttatttcaact - 85148_PtRNAdb chr-III.trna54-Lys-TTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 54 1794486 1794414 Lys TTT 0 0 89.7 65.30 24.40 Inf Lys 92.7 Phanerogamae -NA- Dicot GCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGtCGTGGGTTCGATTCCCACAGACGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ggaaacaaaagctaagaaagtagaaaaatgAAAGGCTAAAATATCTAGGCCTCGGGAACCAatctttaaatataatatattttacgCCACATATTGGTAG agatttatttttcttataaacatTTACTTGAGATTTATTAACAATTGCATgcatttcattaaataaaaatcgattaaaagttttttcgttaaaatcaatt - 85149_PtRNAdb chr-III.trna55-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 55 832254 832183 Pro TGG 0 0 69.2 36.90 32.30 Inf Pro 112.8 Phanerogamae -NA- Dicot GGGCGTTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGAGTTCGATTCTCGGAACGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ACCAAAAATCCTGTTCAAGGGTGGTAGCAGCTTCGGCGAAAATCCTGTTCAAGTACAGTTTATACGACTAGGTATGTGCATTGTGCCAACAAGCTTATGA TGTATGTTTTggcaaattttcttttaaaaattctgGTCCTATGGCCACCTATGTGACGGGCAGAAGTGATTGGAAATAGGCCACTGCATTTACCATTTGA - 85150_PtRNAdb chr-III.trna5-Asp-GTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 5 1867629 1867700 Asp GTC 0 0 67.8 44.80 23.00 Inf Asp 91.6 Phanerogamae -NA- Dicot GTCGTTGTAGTATAGTGGTaAGTATTCCCGCCTGTCACGCGGGCGaCCCGGGTTCGATCCCCGGCAACGGCG 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TTTGAATAATATGCTTTCTTAACTATCATGCCCATGGAAAGTGTAGTCCTTAAAGGTTTATTTAACGAGTATTATAATGTACCGATCTCGACATCGATAG TTGTGtttcttttacttattttataaaaaatagaaaaatttttaaaatgaaaaagaaaaagaaaattgaataaaagtCTCCCTCCTCTTCTTCCCCTCTC + 85151_PtRNAdb chr-III.trna6-Leu-CAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 6 2865430 2865510 Leu CAG 0 0 69.5 46.80 22.70 Inf Leu 109.7 Phanerogamae -NA- Dicot GTCAAGATGGCCGAGTTGGTctAAGGCGCCAGTTTCAGGTACTGGTccgaaaGGgCATGGGTTCGAATCCCATTCTTGACA 81 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. AAGCGAGGCCCGAACGTTTACGTACGTATGATATATCAGGCGGTGTCAGAATCCAAATTACAGCTCTAAATTGATTAGTTTTCAGCTTGCAGAACAGGAA GTATTTTTGCTGTCTTTACCATATATTTTTGCTTTCCCAAATTACTCGAGAGAGGTAGCGTGGTATCTGCCATTGAAAGATTGATTTCGGTTTTACTAAA + 85152_PtRNAdb chr-III.trna7-Ile-AAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 7 22008516 22008589 Ile AAT 0 0 81.8 58.30 23.50 Inf Ile 106.8 Phanerogamae -NA- Dicot GGCCTATTAGCTCAGTTGGTtAGAGCGTCGTGCTAATAACGCGAAGGtCGCAGGTTCGAGACCTGCATGGGCCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTTGTGGGAGGGAAGGTGGATAACGCAATCATTACCATCCACTCTTAATTCCTAGCATATCATGTGTTAAATAAAAAGACTTTTAGTTGTCAAGACAATT ttttattagtttagatAAATTTTGTTCTAAATTTACTTTAATCTATACTTTATTTGTTTAGGTTGGTTTAgtctttttctactttttattttagggttca + 85153_PtRNAdb chr-III.trna8-Thr-TGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 8 25196674 25196745 Thr TGT 0 0 84.5 58.50 26.00 Inf Thr 95.0 Phanerogamae -NA- Dicot GCCCCTATAGCTCAGTGGTAGAGCGTCAGTCTTGTAAACTGAAGGtCCGTAGTTCGATCCTGCGTGGGGGCA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CTGTTGATATCCCTAGAAGTAATTCGGATTTTGATTTGCCTCCTCGCGTCCTCTCTGTATTTGAATCGCTTTGATGAAGGATTAACAATTCAAATTGGAG TCTTTCTTGCACTTTTGCTTCGTTAAAGAAAAAACGACACTGTTTTAAAAACAGTTTAGTCTGCTTGCACGGGTGTTAAACCTCAGAAGTTAGAAACCTC + 85154_PtRNAdb chr-III.trna9-Ser-TGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-III 9 25976713 25976794 Ser TGA 0 0 77.6 45.00 32.60 Inf Ser 115.8 Phanerogamae -NA- Dicot GTCGATATGTCCGAGTGGTtAAGGAGACAGACTTGAAATCTGTTGGGTTTCGCCCGCGCAGGTTCGAACCCTGCTGTCGACG 82 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>......<<..>>>>>.......<<<<<<<<<<<<. GAAAACACGAATTGTCATATCTAATTTGGATTTTGGGCAATTAAGCATTATTTGATCTTTATAACAATGATTAAAAATACGTCACAACACGAGCAGCAAC ctcctttttatttgtttaaattttttgtgcTCTGATTTTATCCCAATCACTAGCTTCATATTCAACGTTACGATAGGGCTCACATAGATTTGATTTCGTT + 85155_PtRNAdb chr-II.trna10-Arg-CCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 10 5022237 5022309 Arg CCT 0 0 68.1 48.70 19.40 Inf Arg 79.8 Phanerogamae -NA- Dicot GCGTCTGTAGCTCAGTGGAtAGAGCGTCTGTTTCCTAAGCAGAAAGtCGTAGGTTCGACCCCTACCTGACGCG 73 >>>>>.>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<. ttttgttaaaccATCCATACAACTTGAATTATATCATGCATCAAACAAATAAGCTTCACATGAATATATAGTAGTTACAGTTACATTATATGCAACCAAA AAATTTCggcttatttttatttttttgtcttttccgACTAAACGCGCCGTATTTGGTTCATATGCAACCTAAAACCCTAGCGTCCATTACCAAGGCCCTG + 85156_PtRNAdb chr-II.trna11-Arg-TCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 11 5128136 5128208 Arg TCT 0 0 66.8 48.40 18.40 Inf Arg 97.1 Phanerogamae -NA- Dicot GCGCCCGTGGCCTAATGGAtAAGGCGCCTGACTTCTAATCAGGCGAtTGTGGGTTCGAGTCCCATCGGGCGTG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ATCTTTGAATCACCGTGATTGTTGTCGCGAATTAATTGTGTTGGAAGATTAAAGCGTAGTTCCCATAAGTAAAAAAGGAAGTACAAGCACCACAAGTGAA CGTTCAATAAATAACCCTTTTCAATATTATTCAAACTGGGCTCTTAGCCCTTGATGGTTCATCTTGTTCAGCACCAATTAGGGCCCAGCTCCTTGGGTTG + 85157_PtRNAdb chr-II.trna12-Asn-GTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 12 6088562 6088635 Asn GTT 0 0 81.8 56.30 25.50 Inf Asn 94.2 Phanerogamae -NA- Dicot GCTGGAGTAGCTCAGTCGGTtAGAGCGTATGGCTGTTAACCATAAGGtCGGAGGTTCGACCCCTCCCTCTAGCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TATGGTGAGAgatgaagttaaaaaaatttaaacattaaacataaaaaaccACAATAACATATTCATTTAGttgttattataaaaatttaaatataaaaaa TTTTAacgttttccttttcttattttttggaCTCTCTAGcgtttttctaattttttggaCCTTATTTGGACCCTCTAGCGTTTTAATGTTTTCCACCCTG + 85158_PtRNAdb chr-II.trna13-Met-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 13 6962566 6962651 Met CAT 6962604 6962615 64.2 40.70 23.50 Inf Met 104.0 Phanerogamae -NA- Dicot GGGGTGGTGGCGCAGTTGGCtAGCGCGTAGGTCTCATAATCCTGAGGtCGAGAGTTCGAGCCTCTCTCACCCCA 74 >>>>>>>..>>>>.........<<<<.>>>>.....................<<<<.....>>>>>.......<<<<<<<<<<<<. TAACCAcaaatatatgatatatatctAGGAATCGTCTGTCCTCGCGTGCTATTTTCGTTTATTAAGAACATGTTCAATAGAATTACCATGATCAGACAAA TTTTATGTTTTCTatctttataaaatcatttttacaCAAGATGTAACACAATACTTTTTAAGACTAATAAAATTGTCATTTCTACATAGGAtgtaaatat + 85159_PtRNAdb chr-II.trna14-Met-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 14 7430715 7430800 Met CAT 7430753 7430764 64.2 40.70 23.50 Inf Met 104.0 Phanerogamae -NA- Dicot GGGGTGGTGGCGCAGTTGGCtAGCGCGTAGGTCTCATAATCCTGAGGtCGAGAGTTCGAGCCTCTCTCACCCCA 74 >>>>>>>..>>>>.........<<<<.>>>>.....................<<<<.....>>>>>.......<<<<<<<<<<<<. TCAATTTGAATTAGGTAGCAAAATGAAGTAGTCTACCAGCTGATTTTACAATCTTCAGAATCTTAGGAAAGCTAATTGTGTCACCACCTCTTCCATTGCC TACTGTTGTTTTCCTCTTTAAATTTTTCCTCTTTAActtgtttaatttttctttttagaagATGACCTAAACTTAACTCCATGCAACATCCGCTGCTTTA + 85160_PtRNAdb chr-II.trna15-Thr-TGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 15 8320003 8320074 Thr TGT 0 0 79.3 49.30 30.00 Inf Thr 92.3 Phanerogamae -NA- Dicot GCCCCTATAGCTCAGTGGTAGAGCGTCAGTCTTGTAAACTGAAGGtCTGTAGTTCGATCCTGCATGGGGGCA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ACCCTCCccactctttctctctctccctatAATAAAACCCCCTTTTTGGTCCATACAGACTTCCCTGAATTAAATCCCAACAGTTGGCTCAGCATCGAAA ATGTGActgtttattttgtttttataatggCATACTATAACATAGAAACGAGAAGTAGCTTTCCGGTTATCGTTAAGGCCACTCAGTTAGGCCGTCTCTC + 85161_PtRNAdb chr-II.trna16-Glu-CTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 16 8444636 8444708 Glu CTC 0 0 78.9 53.10 25.80 Inf Glu 99.2 Phanerogamae -NA- Dicot TCCGTTGTAGTCTAGTTGGTtAGGATACTCGGCTCTCACCCGAGAGaCCCGGGTTCAAGTCCCGGCAACGGAA 73 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. GTTTTGATGGTGCAGTAAAGGTTATTTTTCTAAGGTGGGAATGCATGAGCGTCAAGCTAACTTTGCTGTTTAACGAATTATGAATTCCTTACTTTCAGCA aataattttatttcagGTTCTATCTGATaaccaataaataaaaaaaatctttccaGTGAAAAATTTAACACTGGTtcttattttgataaataataaaaaa + 85162_PtRNAdb chr-II.trna17-Ala-AGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 17 8528234 8528307 Ala AGC 0 0 42.0 31.70 10.30 Inf Ala 54.2 Phanerogamae -NA- Dicot TGGGCTGCGGCTCAGATGGTAGAGCGCTGGCCTAGCATGCGAGAGGtACGGGGATCGATACCCCGCAtGTCCAA 74 >>>>>>>..>>>>........<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<.<<<<<. ATCAACGGCTACGCGGGCAGTTTCGAGCGTCAAAATCTTACTGGTgcaattattttaatcttcAAGCTAATTCGGAATGAGAAGAATGCTTTCATATTTG ATTTCCCCCTTATGACATGAAATGTAGCGCAGAAAGGGCCAATGATTAGAGGAGTGCCTCAAcaattgttttctttcttctctttggtTCAAGAAAACAC + 85163_PtRNAdb chr-II.trna18-Arg-TCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 18 9029092 9029163 Arg TCT 0 0 44.2 35.00 9.20 Inf Gln 59.9 IPD:-39.50 Phanerogamae -NA- Dicot GGTTCAATGGTGTAGTGGTtcAGCACTCTGGACTTCTAATCCAGCGaCCTGGGTTTGACTCCGGTGGGACCT 72 >>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>........<<<<<.<<<<<. CAATTAGTTCAAGGATTGTTATTTTGAAGTTGGAAAATGGTTAAGGACTTTACTATCCATAATCTACTTTATTTATAAGTACCATTTACAGTAACTGGGT TGTGATGGCACTTGGTCATTTTACATGACTAATAGATGTCTTCAACTCTGAAGatgagaaataaaataagcttCTTTTTTGAggcatttgattttttttt + 85164_PtRNAdb chr-II.trna19-Asp-GTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 19 9956334 9956405 Asp GTC 0 0 69.8 46.80 23.00 Inf Asp 98.0 Phanerogamae -NA- Dicot GTCGTTGTAGTATAGTGGTtAGTATTCCCGCCTGTCACGCGGGTGaCCCGGGTTCGATCCCCGGCAACGGCG 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. GAATGAGGAATAACAACAGAAGAGGGCAAGGACCAGGGGAAGATTCTATTCgttaatttttgtcaaataaaaaatttgttctACATCAGCACGCAAGCAA AACCCGCTTTTTATTTGTCTCTGAAACACCGAATCACTGCTGAGTGAAGCAGACAAGCAGCTCTGTACctccaaaaattaataattggaTATTTTCCTCA + 85165_PtRNAdb chr-II.trna1-Lys-TTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 1 1076239 1076311 Lys TTT 0 0 89.6 66.00 23.60 Inf Lys 96.4 Phanerogamae -NA- Dicot GCCGTCTTAGCTCAGCCGGTAGAGCGCGTGGCTTTTAACCACGTGGtCGTGGGTTCGATTCCCACAGACGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTAATTAGAGATCaatattttcctttcaaatctaaatttttagataaattaaaaaatgaattgaCAAAATAATAGTTTATAAAGCCTGCACCAGGTCAAA CGTTTTGGCATTTTTTTCATTCGTCGATTAACCCggtaaatatttatttcaacatttttctAACCCAACCTTTCAACGACCACTCAATGCCGGGAACCCC + 85166_PtRNAdb chr-II.trna20-Gln-TTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 20 10261803 10261871 Gln TTG 0 0 39.9 24.60 15.30 Inf Gln 53.1 trunc_start:4 Phanerogamae -NA- Dicot CacAAGGTCTAACGGTcAGGACACTGGACTTTGAATCCGGTAaCCTGAGTTCAAATCTCAGTGGGAGGA 69 >..>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<.....<. TTTGGGTGCTAACCGGCGAGAAATGAGAATCGTGCTTGATGAAATAAAATCACTCTTTCGCTCTTGTATTTGGATAACTTTTACTTTTCCGAAATATAGA GCAAGACTTATATCCCTCTTCTCCtaactaaaaaatataatgataaaattttactCATTAAATATGATCTATTACTTTAAATAGAGTAATAAATTTGAAT + 85167_PtRNAdb chr-II.trna21-Val-TAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 21 10739958 10740030 Val TAC 0 0 76.7 41.70 35.00 Inf Val 103.0 Phanerogamae -NA- Dicot GATGCTGTGGTGTAGTGGTtATCACGTTAGTCTTACACACTAAAGGtCCCCAGTTCGATCCTGGGCAGCATCA 73 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GCGGGAGTTTTGAAACGCCTTTTATAGTCACCGGCGTGGAAGGAATGGTTATGAGAAAATAAGTAATTTGTATGTTTAGACGAATAGCTCTCTGCATCCC AAGCATTGAGTTTCATTTTTATCACTCATTTTACTTGTTTATGTACATTTTTGTCACCCATTTTCCTTGTTTATTTACTCAGAAGACAATTATACAAGAC + 85168_PtRNAdb chr-II.trna22-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 22 10964548 10964618 Gly GCC 0 0 66.5 44.80 21.70 Inf Gly 94.4 Phanerogamae -NA- Dicot GCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGaCCCGGGTTCGATTCCCGGCTGGTGCA 71 >>>>>>>..>>.>.......<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. AGGGGTTGGTTAGCTTCGGTAATTCATAATtgcataattttgtttttgttttttttctctacttacaacattttactgcTAGAGCGGAGTGGAGCAACAA AGTTTTGTACTATTTTGTGGCCTCTTTGCTTGGGAATTGTCCAAAGGCCCATTGCATGAAACCTAGAATGGACTTCTACCAGTCCATAGAAACTGGGAAA + 85169_PtRNAdb chr-II.trna23-Leu-AAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 23 12429786 12429866 Leu AAG 0 0 74.0 52.20 21.80 Inf Leu 106.2 Phanerogamae -NA- Dicot GTTGAGATGGCCGAGTTGGTccAAGGCGCCAGATTAAGGTTCTGGTccgaaaGGgCGTGGGTTCAAATCCCACTCTCAACA 81 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. CTGTTTCTAACAGCGAGTATTCGTATATTACACTCGcaataagatttttctttttgttaaaaaaatatcattaatttcTGGTAGCGATATTTTAAATAGT ataaatttttcttaaaatggGCTAACCGAAGTTTGTTCAGAGCCCATCCGTAATTGGGTCTTCAAATTCATATGGCCATCCTTAATTGTGTGTGCAAATT + 85170_PtRNAdb chr-II.trna24-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 24 19614294 19614381 Gly GCC 0 0 44.1 30.80 13.30 Inf Thr 44.6 IPD:-41.40 Phanerogamae -NA- Dicot GGAGGGATGGCTGAGTGGCttAAGGCATTGGTTTGCCAAATCGACATACAACAAGaTTGTATCATGGGTTCGAATCCCATTTCCTCTA 88 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<. CTTGCCCGCAGATTTTGATGGCTTGGCTGCTGGGGAGGTCTGGATAGAGTCTCGCTCATAGAGGAAGAGTTCGCTCGCATCAAATTTCGATCAACAACTT GCACAGAAATGTAACGGGCAGGCGAAATTACGTGAAAGAAATAACCTCTTGGTGGAGTCCCCCGAAGGACAGAATAGCACTACTTAGTGAGACGGAGCGA + 85171_PtRNAdb chr-II.trna25-Phe-GAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 25 19614729 19614802 Phe GAA 0 0 61.5 43.60 17.90 Inf Tyr 71.1 IPD:-23.60 Phanerogamae -NA- Dicot GTTCAGGTAGCTCAGCTGGTtAGAGCAAAGGACTGAAAATCCTTGTGtCAGTGGTTCGAATCCACTTCTAAGCG 74 >>>.>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<. GCGAAAAAAGCCCTAACATATTAGTAAGGGGCTTTTCCCTTACTAGTAAAGTGGTAAGGTAGGGCGCTGTTCGATGAAGAAAACAGACTTTAGGAAAGTG GGCGAAGGGTCTAAAGGACACGTAGCCAAGAGTGAGCCGGATTTGGAAATTCAAGtgaaagaagaaggaaaaaagtcGTATAGTGCGAGAGGcatctttt + 85172_PtRNAdb chr-II.trna26-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 26 19615020 19615094 Pro TGG 0 0 32.7 24.50 8.20 Inf Trp 42.1 IPD:-38.30 Phanerogamae -NA- Dicot CGAGGTGTAACGCAGTCtGGTcAGGGCATTTGTTTTGGGTACAGAGGGcCATAGGTTCAAATCTTGTCACCTTGA 75 >>>>>>>...>.>..........<.<..>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTACTCGGATTGGTTCTCGCCCCCCTGTGCCCAAAAGGATGGGCGAGTTTGGTTCTAGTGTTCATTGATCGGGCGGATCTATATGCTTCGGGGGGTGAGA TGTGATGGGGCTGAAGTGCATAGCCCCGCAGCCTATGAAGGTAggcgaaaaaaaaaaacgcgTAAAGCCAAATATGAAATCACTACTTTTTGTTGTGAAT + 85173_PtRNAdb chr-II.trna27-Thr-AGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 27 32031409 32031482 Thr AGT 0 0 73.7 45.30 28.40 Inf Thr 89.4 Phanerogamae -NA- Dicot GCTTTCATAGCTCAGTCGGTtAGAGCACCCGTTTAGTAAGCGGGAGGtCTTGAGTTCGACTCTCAATGAAAGCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTTGCCATTGGAAGAGGCGTGAGACTGTTGGTAAAGTCTCAAATTTCAGTTGGAGATGGTATAACAGACGTAACTGTAACAGTGTTCTTAACTTTGTATA aatattattcattttGTATTGCAACTTTTCAGTTTTCTGCTGCTATCCAATGACAGATGCTAGACAACAAGTTCAAAGGATGTCTTTGTGAAAGTCTGAA + 85174_PtRNAdb chr-II.trna28-Arg-ACG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 28 33436984 33437056 Arg ACG 0 0 71.7 49.10 22.60 Inf Arg 91.4 Phanerogamae -NA- Dicot GACTCCATGGCCCAATGGAtAAGGCGCTGGTCTACGGAACCAGAGAtTCTGGGTTCGATCCCCAGTGGAGTCG 73 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GATTGCGAGGAACTGGTTTGGCTCAGTTCATAGCCAAATGTAGACAAAAGCATGATAGAAAATTGAATTCTATTAGATCTAAAAAAGCCCACTGTACCAG TCATGTACAATGTTTCATATTTTTAGTATAGTCTGGGATATTCCTGTATGAGAATAGATATCCGATTCAGAGCGAAGGTTGTTAAGTGTAAAATGTATAC + 85175_PtRNAdb chr-II.trna29-Val-AAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 29 34473539 34473612 Val AAC 0 0 72.9 48.60 24.30 Inf Val 93.8 Phanerogamae -NA- Dicot GGTGTCGTGGTGTAGTTGGTtATCACGTCAGTCTAACACACTGAAGGtCTCCGGTTCGAGTCCGGGCGACGCCA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TGGAGTTGAAACGTAATGAGCTTGCTCCGCTAACAATGAGATGAtgctaaaaaaattttctgctTTCGTTTAATCAAATATAGCAAGCCAAGCAGCAAAT TTTTTCGTTCTGTTTTGAAGTTTTTCCCTTCAGGCTCCGTTTGGCGGGCGTCTCGCCTTTTAATATTTCGCCGAAAAAGCCAAATGAACTGACATCAGAC + 85176_PtRNAdb chr-II.trna2-Ile-AAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 2 1612933 1613006 Ile AAT 0 0 81.8 58.30 23.50 Inf Ile 106.8 Phanerogamae -NA- Dicot GGCCTATTAGCTCAGTTGGTtAGAGCGTCGTGCTAATAACGCGAAGGtCGCAGGTTCGAGACCTGCATGGGCCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTCGACTATTTGGAATCCTTTTAACAGAATCACTGCAAGGACAATACTGCAATTCAATTTCTCAGAACAAGTATAACCatagaaataaaattagaCATCT atatatttttagtaacAAGAATTATTTCCTTGTTCCTTGTTCCCAACAATAAAAGCAGAAAAATCCCATAAAAAAATCCAcccaaagaagaaatgaaagt + 85177_PtRNAdb chr-II.trna30-Leu-CAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 30 34699101 34699183 Leu CAA 0 0 70.7 32.20 38.50 Inf Leu 92.8 Phanerogamae -NA- Dicot GCTGGTTTGCCCGAGAGGTtAAGGGGGGAGACTCAAGATCTCCTGTACATAAGTACGCATGGGTTCGAACCCCATAGCCAGCA 83 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. GGAGTTGTGCTCGGGCCTAGCATTACACCATCTCGGCTGATCGAACCGACCGGCCCTGATTGTATCCTAATAGTTTGATCTTAAAAAGTTCCGTTGCAAA TATGTTAGTGTTGTTTTACTTTTGTAAAATCACATACAAAACCTGGCCTCAAGACAAAGCTATTGCAAGCCCAAGCCAGGCCGAACTTAAGATTGAGCAC + 85178_PtRNAdb chr-II.trna31-His-GTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 31 38638252 38638323 His GTG 0 0 63.3 34.30 29.00 Inf His 87.4 Phanerogamae -NA- Dicot GTGGCTGTAGTTTAGTGGTaAGAATTCTACGTTGTGGCCGTAGAGaCCTGGGCTCGAATCCCAGCAGCCACA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. AGGTAAGTGAACACTCTTTTTGGGAGATTTATATAGACAGATTCGAGAATTTCGATTGAAgctaataatattaatttatctgCGACTGCTGTCACAAATT GACAATCTGtggttcttttatttttcagtgGCTGCATGCTGACTGACCATTGCTCTGCCTCTACCATTGCTGCTCTTGAGGTGTCTTTGTCTCCACAATC + 85179_PtRNAdb chr-II.trna32-Asp-GTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 32 39284314 39284385 Asp GTC 0 0 67.8 44.80 23.00 Inf Asp 92.9 Phanerogamae -NA- Dicot GTCGTTGTAGTATAGTGGTgAGTATTCCCGCCTGTCACGCGGGCGaCCCGGGTTCGATCCCCGGCAACGGCG 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. acatttgattattttgatgaagattATAATGATGTATCAATTTGGAAAATAGTGGAATTCATGAGATAAAAATTAGCTGCCAAGAAATTTTGGCAACGAA AAggctttctttttccttttaaaaaatatttttattgatcgatttttttttttttttcggaGAGTGGAGGGAAACACAGCATTTCGTGACTTCAGTTCCC + 85180_PtRNAdb chr-II.trna33-Thr-CGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 33 39420445 39420516 Thr CGT 0 0 82.2 57.60 24.60 Inf Thr 90.2 Phanerogamae -NA- Dicot GCCTCCGTAGCATAGTGGTAGTGCGTTCGCTTCGTAAGCGAAAGGtCGCGAGTTCGATCCTCGCCGGGGGCT 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GACAGAGAGATTACGGAGTGGTCTTACTGTTTTCTCAGGGTTTTGAAGTCGATAGAGAGTTAAAGTTTAGCATTTTCATCTGCGAGAACATGTATCAGTT TTTTTCCGTTTCATCCGATCAGACATCGTTTAGACGGAATTTCTAGAAAATCTTGAGATCGTTGACCGGTGGACCCCACGTTGGATTGGGAGGTAGATTG + 85181_PtRNAdb chr-II.trna34-Asn-GTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 34 39474390 39474463 Asn GTT 0 0 84.5 59.40 25.10 Inf Asn 95.9 Phanerogamae -NA- Dicot GCTGGAATAGCTCAGTTGGTtAGAGCGTGTGGCTGTTAACCACAAGGtCGGAGGTTCAAGCCCTCCTTCTAGCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GCAAAGATTGCAGAGCTCAACTGCCGTTGATAGATTGATTCGCGTCTGGTTTTTAATATAGTTTTGATATAAAGCATTGTGTACTTTTATCGAGCAAGTC ttaatattttaatattttaatttctaaaaagaatactaatcataaaatattaatattgtattttctattttagattttaatattttagtttctaaaaaga + 85182_PtRNAdb chr-II.trna35-Ala-TGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 35 39573729 39573801 Ala TGC 0 0 70.0 44.20 25.80 Inf Ala 100.4 Phanerogamae -NA- Dicot GGGGTTGTAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGtACAGGGTTCGATCCCCTGCAACTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. tttataccTGTTGTAAGAtgagatattatttttacatttgaattgagaaaatgttttaaaagtAACTCCCAAAATAGTATGTTTTTTACTTCAGCGACAT GGTTACCGCATTTTTCCCaacattgatttatttgtttggTTTTTCGGATAAAATCGAAACCTGGTTCCTTCCTGTTCCTCTAACTAAAAATGTTGACAAG + 85183_PtRNAdb chr-II.trna36-Thr-AGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 36 39667409 39667482 Thr AGT 0 0 75.0 46.80 28.20 Inf Thr 89.8 Phanerogamae -NA- Dicot GCTTTCGTAGCTCAGTTGGTtAGAGCACCCGTTTAGTAAGCGGGAGGtCTTGAGTTCGACTCTCAACGAAAGCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CGACCACCTCCCTTTGCCCGCTAGAAAAAAATGGTAACCATCAGCTGGGGCTTCTTCTCTGCACAGCGTTTGTCTCATCATTTGTTCGCCACCGTCGACA ACgtaactttatttttctctgCTTGCCTGCATTATCTGCCTTTCTTCTTCCCGGATTCTGGCCGAAGCCTGATGAGAATTTAAATTAGAAAGAAATCATC + 85184_PtRNAdb chr-II.trna37-iMet-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 37 40410771 40410700 iMet CAT 0 0 58.3 28.10 30.20 Inf iMet 118.7 Phanerogamae -NA- Dicot ATCAGAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGtCCCAGGATCGAAACCTGGCTCTGATA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. aaaaaactatAGGGGTATAAGTGATTTTTACCTGGTGAAAGATTGTTAAGAAAAGAAGGATATTActttaaaattacaaatatataatttCTAATGACAA CAAAaggatattatttttttattttttattattttcctttaaagCGGCGTCGTTTACACCTTCAACAAACAGTCCTAAACCAAATTCCCCTTTCTACCCC - 85185_PtRNAdb chr-II.trna38-Glu-TTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 38 38342707 38342638 Glu TTC 0 0 48.6 25.80 22.80 Inf Glu 80.4 Phanerogamae -NA- Dicot TCCGTTGTCGTCCAGTGGCtAGGATGTCTGGCTTTCACCCAGGAGaCCCGGTTCGATCCCGGCAACGGAA 70 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>.......<<<<<<<<<<<. ACAAAACTTGTGTAGTATTCCTCCATCACAAACGTGAACTATcactctctttttatttttggctaGCTTCCGTTCATGCCTTTGTTATCCAGGCAGTATA CCTCTTTAATCATGTGCATGGAGTTTTTATTATAGCTCATCTTTCTTATTCATGAACCCAAAAACTCTAAAACTAGCCTGCTAACAAGTGAGCTTTGGTT - 85186_PtRNAdb chr-II.trna39-Ser-AGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 39 35320060 35319979 Ser AGA 0 0 79.5 43.70 35.80 Inf Ser 113.0 Phanerogamae -NA- Dicot GTGGGCGTGCCGGAGTGGTtATCGGGCATGACTAGAAATCATGTGGGCTCTGCCCGCGCAGGTTCGAATCCTGCCGCCCACG 82 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. TCAATCAGCTCTCTGGTaccttctttttcctttataggaagagagggaaaaaaTGATTAATGAAGTCAGAACTTTTAAATTACGAGGAAGTTACCGCAGG CCTATTTCCTTTTTACCTTCTTGAAAGATCAAGCCTAACACCAAcgttcttttttcttattatttttagacctttttgtttggttgggaatctttctttt - 85187_PtRNAdb chr-II.trna3-Leu-CAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 3 1698756 1698839 Leu CAA 0 0 79.7 53.90 25.80 Inf Leu 126.5 Phanerogamae -NA- Dicot GTCAGGATGGCCGAGTGGTctAAGGCGCCAGACTCAAGTTCTGGTCTTCGTGAGAAGGCGTGGGTTCAAATCCCACTTCTGACA 84 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. ATCACTAACACTATTGCCCTCCCAAACAGCTTGTCTGACAATTTGAGGTTGTGTTTTATTGACTACGAATCTTGAGAGAAGACAACAACAGCCACTAGAG TTCAATGTACCCTTTAGCCCATTTTTACAGAAAAGTATGGGATTGCTTTGGTTGGGTTACTTGAGTACATACATTGGATTCAAAGACATCATAAAATGCT + 85188_PtRNAdb chr-II.trna40-Lys-CTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 40 34684580 34684508 Lys CTT 0 0 86.8 66.60 20.20 Inf Lys 107.7 Phanerogamae -NA- Dicot GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGtCGTGGGTTCGAGCCCCACGGTGGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. gaatttttttaatttttcgtctGCAAGGGAAGGGTATGAAATAAAATACAGttatgagttttataaataatttaaatataagagTGCAGATCAACAAGAA TTGACATTTTGGAATTTGCATTGTTAGGGTCACTACTAATGCAGTGGTGTTCGTTACTTTTCATGATGTAATTTGAAAAAGTTGAATGCAGaatgataat - 85189_PtRNAdb chr-II.trna41-Val-AAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 41 33739073 33739000 Val AAC 0 0 70.4 47.80 22.60 Inf Val 87.0 Phanerogamae -NA- Dicot GGTGTCGTGGTGTAGTTGGTtATCACGTCAGTCTAACACACTGAAGGtCTCCGGTTCGAGTCCGGGCGATGCCA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CGAAGAACCCATTTAGGCTTTTTGTGAAAAACAGAAAGAAGAATTCCTACTgtcaacaaaaataaaaataattggcTGTCTCAGCCAGAAAAAGTTACTT aaaattattctttatAAGAAATCTTATTTTAGTCATTGAAACAGTTTAGAATCCCAAAAATTTAATGGTCTTGTCCATCCAATTTCAATCCAGtccaaaa - 85190_PtRNAdb chr-II.trna42-Thr-TGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 42 33709239 33709168 Thr TGT 0 0 77.8 58.70 19.10 Inf Thr 89.1 Phanerogamae -NA- Dicot GCCCGTATAGCTCAGTGGTAGAGCGTCAGTCTTGTAAACTGAAGGtCCGTAGTTCGATCCTGCGTGGGGGCA 72 >>>>.>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. attactgaagaaaaggaaaataaacaaaatatatatatatgggaGAAAAGGCCAAGTGAATGACTCAAGTAACCAATTATCTCGTCCAAGGGTCGAAGAA GAAATTCGTTTTGCAACTGCTACATCAAATTTACATTTCACTTGGGGCAGCTAGGCCCACGATACCCTTAGACTCAACCCCAATGGCATTTTAGTCCTTT - 85191_PtRNAdb chr-II.trna43-Gly-ACC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 43 29669300 29669232 Gly ACC 0 0 20.1 10.70 9.40 Inf Gly 33.4 Phanerogamae -NA- Dicot GCACCAGTAGTACAGCGGTAGAATAGTACCCTACCACGGTACAGaCTCGGGTTTGATTCCCCTGCTACT 69 >.>.>>>..>>.>.......<.<<.>>>>>.......<<<<<......>>>.......<<<<<<.<.<. CTCTAGCACTTAATATTTGCTTATCCAACCAAGCATTGTGGAAGGAAAAAAGGGCTTGTAAATGCGTCTGAAAATGATTAAGTTGAGCAACGGTTGGAGA GCTTGGTGATGTTGTAATGGAAATATAAACAAACATTTCTCCTTTTGTCTTTTATTACTTTGGATCAATTGTTCCCTTTGCAATAAATGAGAGAACAAAT - 85192_PtRNAdb chr-II.trna44-Tyr-GTA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 44 25552622 25552535 Tyr GTA 25552585 25552571 74.4 42.90 31.50 Inf Tyr 111.8 Phanerogamae -NA- Dicot CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGtCGCTGGTTCGAATCCGGCAGGTCGGA 73 >>>>>>>..>>>>........<<<<.>>>>>......................<<<<<.....>>>>>.......<<<<<<<<<<<<. GCAGGGGAGGTGATCGACCACGAGATTGATAGCGGAGAGCCCAGACTGCCActatatgaaaatgaagaagtaAATATTACTGGAACCGACTTGCAGTGAA tttgctttttattttgtaactAATGATATGATATGGTTTTCTTTCGTAATTTTGGGTCACATCTTATCCGAAAAGGGTTGTCGAAAGAAGCCCAAAAGGg - 85193_PtRNAdb chr-II.trna47-Gln-TTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 47 13923425 13923354 Gln TTG 0 0 73.5 53.70 19.80 Inf Gln 104.8 Phanerogamae -NA- Dicot GGTTCTATGGTGTAGTGGTtAGCACTCTGGACTTTGAATCCAGCGaCCTGGGTTCGACTCCCGGTAGGACCT 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. CTAAGCTTCTAACCCCTGTTAGGTAAGTCAACCCGTGTATTATTCCTTAATCATGTATCTAAAATGCCTTCAGTCTAATTTTGTTAACAACTCGCACCTT TTTTATAGAAAGTTCCCTAATcagttattttaattaatttttaaatataaaaaggaaTAATGATGATCATATTTACCATCCTATTAAATTGAGGATTCCC - 85194_PtRNAdb chr-II.trna49-Asn-GTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 49 11581019 11580946 Asn GTT 0 0 85.5 60.40 25.10 Inf Asn 97.0 Phanerogamae -NA- Dicot GCTGGAATAGCTCAGTTGGTtAGAGCGTGTGGCTGTTAACCACAAGGtCGGAGGTTCGAGCCCTCCTTCTAGCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. taacaaaaagGAGTATGTAAAATTTCAGTTGTTAGATTATACGAATGACTGAATTGTGAACAAATGttaaaaaagcaaaagaaaatttgaatatcaTAAA tattaaaatatattttgcatGACCAATCTGAACTGATTAGtcgtattttttttttatatcctAATCATCAGCCAGTGGAGTCTAATTAGGAGAGATATCA - 85195_PtRNAdb chr-II.trna4-Thr-TGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 4 1767729 1767800 Thr TGT 0 0 84.5 58.50 26.00 Inf Thr 95.0 Phanerogamae -NA- Dicot GCCCCTATAGCTCAGTGGTAGAGCGTCAGTCTTGTAAACTGAAGGtCCGTAGTTCGATCCTGCGTGGGGGCA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TCCTGAAACATGTAAGCAAGAGAAGAAATGTTACATGTCCGAATCGATGGTGAAGAAATTTTCCAGCAAAATTCTTGCTGATTTTCTTTGTTAACAAACA AAAGGAGGAAAGGAACCGTGTCTTCCACCTTTTTCAATTATGTGTTCTCTTTCCCTTTcctcagttttttttttctcattaagAGCATCAAAGCATGAAT + 85196_PtRNAdb chr-II.trna50-Phe-GAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 50 10963403 10963331 Phe GAA 0 0 69.9 60.80 9.10 Inf Phe 104.9 Phanerogamae -NA- Dicot GCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGtCGCGAGTTCGATCCACGCTCACCGCA 73 >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<.<<<<. aaataaaaactactCAGCGTACGCCATAAGGCAGagattttccttcatttttgtTGCTAATATTACCAAATAATTAgacaaatgaaaataaacgACATCG TTTAGAGTTTTCAAACTTTACTCAGGCCCTCTTTCCGGCACATATCCAATGATGGGTTTCACTTTCACCATGTATCTATTGGGTTGCCCGTATGAATAGA - 85197_PtRNAdb chr-II.trna51-Phe-GAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 51 10707845 10707773 Phe GAA 0 0 78.3 58.40 19.90 Inf Phe 113.2 Phanerogamae -NA- Dicot GCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGtCGCGTGTTCGATCCACGCTCACCGCA 73 >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. TCTTGAGAATCCTAGACAGGAAAATAGTTGCAGCAAATatgggaaaaaaatgaaaagactatatgaatatgtaattttaaaaatcacaCTTAAAGCATAT tttaattcatttttcggctttttaatttttagatggacctttttatctttaatttttaactctttatctttttttttgcattcaaataagtttttaaact - 85198_PtRNAdb chr-II.trna52-Ala-AGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 52 8854170 8854098 Ala AGC 0 0 63.4 38.20 25.20 Inf Ala 98.3 Phanerogamae -NA- Dicot GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGtACGGGGATCGATACCCCGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GTCTTTCATGAATCAATGATTCTCCAGCGGCAAACGAATAAACCCCAACCGCCAACGTGCCTTTGCCCAGAAAAGCTACCAAACTTGACGAATAAGCCAT TCTGTAATGATTATAGATTTGACGCGTTGCTGGGGTTCAATCTAATTTTGGGACATAAATTTCCTTATCGTTTATATTGCAAGCTAATTAATGaagtttt - 85199_PtRNAdb chr-II.trna53-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 53 5906332 5906261 Pro TGG 0 0 69.2 36.90 32.30 Inf Pro 112.8 Phanerogamae -NA- Dicot GGGCGTTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGAGTTCGATTCTCGGAACGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TACTATCATTGCAAACTTAGCTCAGAAGTTATGCAAGTCATATTTATTGCCTGATTCATGTTAAATGCTCTTTCATCATACACAACAGAGTCCCATTCGA ATGTGATTTTTGGGCTTCAGGAAAAAGCCTCTTTAGGCTGGCCTGATAGATTGGGCCTCACTCATTTCTAATTAAGACCAATGTGAAACACAGTGGACAA - 85200_PtRNAdb chr-II.trna54-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 54 5903973 5903902 Pro TGG 0 0 66.0 33.20 32.80 Inf Pro 106.1 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGGGGtCCCGAGTTCGATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GACAGTGGGTCCTCTACAAATGAAGACATTGAAAATTAACAGGAGCCCTTGGAGAAAATGTATCATAAGTATGAACCAGACATGATACATATAAAAAGGT AATGCCttgcttttctctttttggttCCCTATATTCTATCCTGAAATATTTGATCAGAGGAATCTGATTTGAAGTcaactttaaaacataatacaGAACT - 85201_PtRNAdb chr-II.trna55-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 55 5903091 5903020 Pro TGG 0 0 68.5 35.70 32.80 Inf Pro 111.2 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGAGTTCGATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CTtcatcaataaataaaaaaagaaaagtatgcACCATTTTTTGCAACTTTACTACCCATAGATgttacaataataaaaaaacattataGACAACCAAAAC AATCCCtggattttttctttttggatccCTATATTATatcctaaaatattttattagagGAATCTGATCTGAAGTCAACATTAAGAGCATAATACAGAGC - 85202_PtRNAdb chr-II.trna56-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 56 5902208 5902137 Pro TGG 0 0 68.5 35.70 32.80 Inf Pro 111.2 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGAGTTCGATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CTTCatcaataaataaagaatgaaaAGTTAGCACTAtttggtgaaaatttaccaCCTATAGATGTTATAACAATAACAAAACACTACAGACTACAAAATC AAGGCCTAGCTTTTTTCTATTTCGTTCCCTATTTATaatgtgaaatattttaacagAGGAATCTGATCTGAAGTCAACATTAAGAGCATAATACAGAACT - 85203_PtRNAdb chr-II.trna57-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 57 5901312 5901241 Pro TGG 0 0 68.5 35.70 32.80 Inf Pro 111.2 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGAGTTCGATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AGAGActtcatcaataaaaaaaaaaaagtatgcaccattttttaaaatttaccaCCAATAGATgttataataataacaaaaccTTACAGACAACAAAATC AATGCCTagcttttttccttttggttcCCTATATTATATCCAGAAGTATTTAACCAGAGGAATCTGATCTTAAGTCAACATTAAGAGATTTAGTACAGAA - 85204_PtRNAdb chr-II.trna58-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 58 5900402 5900332 Pro TGG 0 0 40.5 19.80 20.70 Inf Pro 68.2 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGCTGCAAAGGtCCCAAGTTTGATTCTTGGAATGCCCC 71 >>>>>>>..>>>.........<<<..>.>>.......<<.<.....>>>>>.......<<<<<<<<<<<<. GTTCATcaacaaataaagaaagaaaagtaagcatcattttttgaatatttaccACCTATAGATgttataataataacaaaacattATAGACAACAAAATT AATGCCTAGCGTTTTTCTTCTTGGTTCCCTATATTATATCCTGAAATATTTGATCAGAGGAATCTGATCTGAAGTCAACATTAAGAGCAAAATACAGAAC - 85205_PtRNAdb chr-II.trna59-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 59 5899531 5899460 Pro TGG 0 0 68.5 35.70 32.80 Inf Pro 111.2 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGAGTTCGATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CATCAtcaacaaataaagaaaaaaaagtatgcACCATTTTTCGAAAATTTACCACCTATAGATgttataataataacaaaacattACAGACAACAAAATA AATGCctagcttttttctttttgattctGTATATTATatcctaaaatattttatcagaGGAATCTGATCTGAAGTCAACAGCAAAAGATTTAACACAGAA - 85206_PtRNAdb chr-II.trna5-Ile-TAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 5 1914215 1914288 Ile TAT 0 0 81.7 63.20 18.50 Inf Ile 100.7 Phanerogamae -NA- Dicot GGTCCCGTAGCTCAGTCGGTtAGAGCGTTGGTCTTATGAGCCGAAGGtCGCGAGTTCGAGCCTCGCCGGGACCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. tgaataaaatttaaaaataaggtGTTTTACTCTATAAAACTTGGAACTCTATTTTGTTTCAGTTATGTGCTTTATGAGTATAGAATGCATTAAAGGTACA AATTTATTATTgaccatttttatttttattttgactaTTATTCACAACATCATTGTTAATCTCCAACTTGTCTGgaaacatttctttttttgttttgagt + 85207_PtRNAdb chr-II.trna60-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 60 5898637 5898566 Pro TGG 0 0 61.9 36.00 25.90 Inf Pro 101.9 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCAAGAGGtCCCGAGTTCGATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<<. CTTCATcaacaaataaagaaagaaaagtatgcaccattttttgaaaatttaccaCCCATGGATgttataataataacaaaacattACAGACAACAAAATC AGTGCctagcttttttctttttggctcCCTATATTATATCCTGATATATTTTATCAGAGGAATCAGATCTGAAGTCAACATTAAGTACATAATACAGAAC - 85208_PtRNAdb chr-II.trna62-Ala-TGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 62 5896753 5896682 Ala TGC 0 0 31.0 15.40 15.60 Inf Pro 53.9 IPD:-16.40 Phanerogamae -NA- Dicot GGGCATTTTGTCTAGTGGTATGACTCTCGCTTTGCGTGTCAGAGGTCTGgAGTTTGATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>.>>.......<<.<<....>>>.>>.......<<<<<<<<<<<<. ACAGAAGAAAAACTTGCTAACAATCTAGCAGCTAGTCATCAAAATTTAGCAAAGAAAAGAGCTAATAACTCAAACCAAATCATGGTAAACATCAAACATT CGActccttctttctcttttccaaattttacaacttgaaataataattgaTCATCAGAATCCAGCCTCAAGAAAACTTTAATTACGAGTATAATAATGAA - 85209_PtRNAdb chr-II.trna63-Asn-GTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 63 5843429 5843356 Asn GTT 0 0 78.9 56.50 22.40 Inf Asn 90.6 Phanerogamae -NA- Dicot GCTGGAGTAGCTCAGTTGGTtAGAGCGTATGGCTGTTAACCATAAGGtCGGAGGTTCGACCCCTTCCTCTAGCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. aaatgtaaaacCGCCAAAGCGGATGGCTCCTGGTAATTGAATTTGTCTTGTGTGCTTTAATTCTTAgatatatttaaattgttaaaaatgCATTAAACAA TTTCTTgtaaatttttctattttcgtTCTGGGCTTCTGGCCCTAATAATGGACTCCACAAACTTTTTCATTCCAGTTTTGTTCTGGGTTTCCGGCCCTAA - 85210_PtRNAdb chr-II.trna64-Glu-TTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 64 5499388 5499317 Glu TTC 0 0 72.0 47.50 24.50 Inf Glu 101.6 Phanerogamae -NA- Dicot TCCGTTGTCGTCCAGCGGTtAGGATATCTGGCTTTCACCCAGGAGaCCCGGGTTCGATTCCCGGCAACGGAA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. ATTAATCTTCGTTTCCACCGTATTTTCCTTGCTGCGATACGCTGAACAGAACAGAGGGTTAGTACcgcttattattttttctgaGCCATCAATATTCAAA aattttttttttgacttcCCTTTTAATACCTCtgcttacttttttttataaacccCATGGAAGGCAGTttacttttattaatttttaccAATACGAATTA - 85211_PtRNAdb chr-II.trna65-Glu-TTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 65 5484627 5484556 Glu TTC 0 0 68.8 44.20 24.60 Inf Glu 98.3 Phanerogamae -NA- Dicot TCCGTTGTCGTCCAGCGGCtAGGATGTCTGGCTTTCACCCAGGAGaCCCGGGTTCGATTCCCGGCAACGGAA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. GTTCGTCCCCACTATTCCTGGCCTTGGGCCGTCAAGGCtggaagaagaaaacaaaaaatcttaACGATGAGGAAGTTACTAATCTTATTATGGCATTAAA ttattctttttccctCCCCTTTGACCTAGGTTTCAATTTATACCTAAAATCATTATAAAGCAAAAGAATCCGTGTTCTTTGTCCCTCCGCTTTCACACCT - 85212_PtRNAdb chr-II.trna66-Thr-AGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 66 4320425 4320352 Thr AGT 0 0 75.0 47.40 27.60 Inf Thr 89.8 Phanerogamae -NA- Dicot GCTCTCGTAGCTCAGTTGGTtAGAGCACCCGTTTAGTAAGCGGGAGGtCTTGAGTTCAACTCTCAACGAGAGCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TAATCCCATGTGGACTGGTAAACTGACTTTCGGCGTCGCATTGTTGATTGGTCtgttatttataaaatcaatattttaagTGACTCGAGCCTTTCAAGCA GTTGATGTGTTTTTCggtttctttatttattccttatattttattatttagggACAACCAAAATTAGGTTGATAGACtttcaattcaatttaaataagaa - 85213_PtRNAdb chr-II.trna67-Gln-CTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 67 4250948 4250877 Gln CTG 0 0 77.0 50.50 26.50 Inf Gln 100.6 Phanerogamae -NA- Dicot GGTTCCATGGTCTAGTGGTcAGGACATTGGACTCTGAATCCAATAgCCCGAGTTCAAATCTCGGTGGAACCT 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TCTTTGGTTATGGTGGGaattggaaatggataaaaagTGGCAGATATTTCCAGCTGTAGCAagatttgtaaaaaaaaatatagaacCCTCCGATCCAAAA ATTGATATTCCATTTTTCTAAATGTCAACATTAATCCTTTTAGAAGGCATATGGTGATGGGGAATCAGcattattatcattttgtCCTGGCTTGTCAATG - 85214_PtRNAdb chr-II.trna68-Tyr-GTA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 68 4057355 4057263 Tyr GTA 4057318 4057299 74.2 42.70 31.50 Inf Tyr 111.8 Phanerogamae -NA- Dicot CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGtCGCTGGTTCGAATCCGGCAGGTCGGA 73 >>>>>>>..>>>>........<<<<.>>>>>...........................<<<<<.....>>>>>.......<<<<<<<<<<<<. TTCCACCAAGGCACATAGATAAAATCAAGCTTAccagcaaaaaaaaataattaaatattttatgtccAAATTTAAAACTCACGATGCTTATTGATCAAAA TTTTTGCCtcttttttgtaaattttaatttttcctgTCTATTAAGAAAGggaaacaaggaaaaaaagtcTTGGTTCCCCATAAcgaataagaaaagaaag - 85215_PtRNAdb chr-II.trna69-Glu-CTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 69 3666665 3666593 Glu CTC 0 0 78.9 53.10 25.80 Inf Glu 99.2 Phanerogamae -NA- Dicot TCCGTTGTAGTCTAGTTGGTtAGGATACTCGGCTCTCACCCGAGAGaCCCGGGTTCAAGTCCCGGCAACGGAA 73 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. AGTAAATAGTAACAATGGGTTTATTCGAAGGGGATTAAAAAACgcatataattaataaatatagaAACTTTTAATGCTTATACCAGCATCCTCCACATCA CTTCTTTTTTCTCCAGGCACTAGAATATCCCTTTTATTCAACTTGACTCAAAACAGTGTCGTTTTCGCGACCCTTCCTAAAGGCTTGAAAGCTGGTTATT - 85216_PtRNAdb chr-II.trna6-Pro-CGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 6 3769322 3769393 Pro CGG 0 0 68.5 36.10 32.40 Inf Pro 108.5 Phanerogamae -NA- Dicot GGGTGTTTGGTCTAGTGGTATGATTCTCGCTTCGGGTGCGAGAGGtCGCGAGTTCGATTCTCGCAACACCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TGTCTCAGGAATGTGGTCTTCTTTCTGCTACAAAAGATACTTAATGATAACATTGGTATCGATAATTTAATATAGAACTTAAGGAAACATTTATTATCGT TTAATTGGTTTGCTTTATTATACCATTTTTGTACTTTTAAGCGTCTTAGACGCCTAGGCTATAGGGGTTTGCCCATCTCATCACGTTTTACCTCATCAAA + 85217_PtRNAdb chr-II.trna70-Leu-CAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 70 3586275 3586192 Leu CAA 0 0 80.5 54.00 26.50 Inf Leu 128.6 Phanerogamae -NA- Dicot GTCAGGATGGCCGAGTGGTctAAGGCGCCAGACTCAAGTTCTGGTCCTCGAAAGAGGGCGTGGGTTCAAATCCCACTTCTGACA 84 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. CTCAAGTGCAAGAACCATAGTCCGAAAGCCTAGACCAGCGTGAACTTCTTAAGcctaaaaatttgaatatattttaCTTGTACAATAGATTCAACGGATT ACTCTTTTTTTCGTTTTTCCTGCGAGCAATGCTAACGACGTCGTTTGGATAATCCGTCACCACATTGAAACAACGGCACTTCGTCTACGTCGTTTCGATT - 85218_PtRNAdb chr-II.trna71-Thr-AGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 71 3087842 3087769 Thr AGT 0 0 76.0 48.40 27.60 Inf Thr 90.6 Phanerogamae -NA- Dicot GCTCTCGTAGCTCAGTTGGTtAGAGCACCCGTTTAGTAAGCGGGAGGtCTTGAGTTCGACTCTCAACGAGAGCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CCACTCCGTGCGCCACTTTGCCTACGTTGTGACACTCCTGTGCTCTAGCTCGCGCTTTTTTACACGTCGTGACATGAAACAAGATGGGCATGACAGGCAA ATTGTTgagatattttcttttgaaattttttccatCTTAAACCTACTTAGTCAGATGCTGAGTCAGCAACCCAGTGGCCAACAACAAACACTTCATACAG - 85219_PtRNAdb chr-II.trna72-Val-AAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 72 1807612 1807539 Val AAC 0 0 72.9 48.60 24.30 Inf Val 93.8 Phanerogamae -NA- Dicot GGTGTCGTGGTGTAGTTGGTtATCACGTCAGTCTAACACACTGAAGGtCTCCGGTTCGAGTCCGGGCGACGCCA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTGGTttcaaataattcaaaataaatagatattttacATATTGTAAGCCTTattcaatttgatttaaaaatataagtgaattttttgcttgaacattaAA GACTAcgttttttccaatttttaatAGAGCAAACGACGTCGTTAcctcttcttttccttcctcCACAATCGCCCCCGCGTATCACGGAAAGGTGCCCCAC - 85220_PtRNAdb chr-II.trna73-Leu-CAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 73 239563 239481 Leu CAA 0 0 49.7 40.60 9.10 Inf Leu 81.7 Phanerogamae -NA- Dicot GCCAGGATGGCCTAGTGGTctAAGGCGCCAGACTCAAGTTCTGGTCTTCGTGAGAAGGCGTGGGTCAAATcCCACTTCTGAGA 83 ..>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>........<<<<<<<<<... GGAATCAATAGATTATAGAGCCTGTCTTTAGCACTCTAAACACAAGAACACATGTGAGGATGCCCGAGTGGTAGCTGTTCTACatacaagaaaagaatac ATCACTCAATTTATAAACATTGCATTATTCTACAATGGAAAATTACTAACCAAACTCCAAAAACATCTTACTACAATCTATGTATAATATGCAATATGCA - 85221_PtRNAdb chr-II.trna7-Glu-CTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 7 3881387 3881459 Glu CTC 0 0 78.9 53.10 25.80 Inf Glu 99.2 Phanerogamae -NA- Dicot TCCGTTGTAGTCTAGTTGGTtAGGATACTCGGCTCTCACCCGAGAGaCCCGGGTTCAAGTCCCGGCAACGGAA 73 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. GACGTCCTCTCGTCCTTCCCAATGTGATCACTGCGTCACGGGTAAAAGTTCTTGGTTGTTTCTTACTATAGCCTTAGGTTTTTGGCAGCTAACAAACAAA aattcattttttcccTAACCTAATTGGAGGAGCACTTGCCTTTTCAATCACCGTTCAGCGAGATCTGCTACTTAACTGGCCACCAAGGGAAGCCAGACCA + 85222_PtRNAdb chr-II.trna8-Glu-TTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 8 4303859 4303930 Glu TTC 0 0 70.9 46.40 24.50 Inf Glu 97.7 Phanerogamae -NA- Dicot TCCGTTGTCGTCCAGTGGCtAGGATGTCTGGCTTTCACCCAGGAGaCCCGGGTTCGATCCCCGGCAACGGAA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TTCCCTAAAATCATATTACTTGCAATGACCATCTGTGAACAcattcctttttgtttttgagttGCTATTAATTGATTTCTGTTTTTTCACATATCAAAGC TGATTATCCGCCTTTTTAACCGACAACAACTTTTCACTGTCAGCACAGAGAAgtgattttgttatttttcatGATCACAGTCAAACTCTCGTATTTTCTA + 85223_PtRNAdb chr-II.trna9-Arg-TCG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-II 9 4542522 4542595 Arg TCG 0 0 81.9 60.40 21.50 Inf Arg 92.9 Phanerogamae -NA- Dicot GACCGCATAGCGCAGTGGAttAGCGCGTCTGACTTCGGATCAGAAGGtCGTGGGTTCGACTCCCACTGTGGTCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. tatttatatttttttttttggcatttgtttgtataaatattagaaaaccaATATTTAGTACCTATTAGGTATTAAGTTACTCAACTTGTCACCGTTCAAA TTATTTTTTGGGCCTTTTATGTTCTCTCGTTTGTTAATCGAATGGCCCAAGTATTAGCTTGGGCTTTGGCTTTGATTTCAAACTTATCCTTACCGTTGTC + 85224_PtRNAdb chr-I.trna10-Arg-TCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 10 2761885 2761957 Arg TCT 0 0 70.3 50.10 20.20 Inf Arg 92.3 Phanerogamae -NA- Dicot GCACCCATGGCCTAATGGAtAAGGCGCCTGACTTCTAATCAGGCGAtTGTGGGTTCGAGTCCCACTGGGTGTG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AAAGAAATAGACAAGAAGATCAAAGGAAGGAACGAGGTCTACTTTAGGATGGTACCAATAATTTCCGTCTTAAGTAGTCAAATGAAAGAACCTTTCAACG tactttctattttttctacCGTTAAGTAAATAGAACGGACCAGAAGCCCATTATTCCTAATAGGCCCAGATCTCTAttgaaaactttttattaGGCCCAA + 85225_PtRNAdb chr-I.trna11-Ser-GCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 11 4689261 4689342 Ser GCT 0 0 76.2 41.10 35.10 Inf Ser 105.6 Phanerogamae -NA- Dicot GTCGCTTTGGCCGAGTGGTtAAGGCGTGTGCCTGCTAAGTACATGGGATTTTCCCGCGAGAGTTCGAATCTCTCAGGCGACG 82 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. CAATTGTATCCACCACCAATTACCTATGTCAACTATCATCAAAATGTTAGTATTATAATGTATTGTTAAAGCCAGATACTTTAGTGTCTCTCTCTAACCC caaaatttttcaacttataacttttcttttcaaaaattggGCCCCAACGGCTTCAAGTCAAGCGGCTCGAAAGCCTGCCCCAAATCTCACCTAGACTGAC + 85226_PtRNAdb chr-I.trna12-Gln-CTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 12 4812114 4812185 Gln CTG 0 0 75.3 51.20 24.10 Inf Gln 103.1 Phanerogamae -NA- Dicot GGTCCCATGGTCTAGTGGTcAGGACATTGGACTCTGAATCCAGTAaCCCGAGTTCAAATCTCGGTGGGACCT 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. aaaatagaaaatcagATGGCATTCTCTAAAGCAGGAAAGATGGCCTAGGTCTTTTTGTCTGTCTAGTAAAAGGTATTTACATATGGAAAAGTTTACAAAT TATTTTTCCTAGTTTTTtgtcttatttttatttttacaacaTTTCAAATATAGTACTTGATTTTTTTGCCCTTTTAACGTCTgttacttgattttttttg + 85227_PtRNAdb chr-I.trna13-Arg-ACG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 13 5329665 5329737 Arg ACG 0 0 71.7 49.10 22.60 Inf Arg 91.4 Phanerogamae -NA- Dicot GACTCCATGGCCCAATGGAtAAGGCGCTGGTCTACGGAACCAGAGAtTCTGGGTTCGATCCCCAGTGGAGTCG 73 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AGCATTTGGGCTCTTTCAGAGCTATTGACCGTTGACGCAGACTCCCGTTTCTTTCtatataactatatatataaaaaaagaacaacTCGGTTTCAGCAAA GTATTAACGCGCGGAAGTTGGAAGCTTTCTGATCCTCAGTATTAAGTTTAGAATGCTTCCCTATTGTCCGTTTTAAGTTGCTTTCCATTTTTCTACGTTC + 85228_PtRNAdb chr-I.trna14-Ile-AAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 14 7089449 7089521 Ile AAT 0 0 48.3 34.60 13.70 Inf Ile 71.1 Phanerogamae -NA- Dicot GGCCTATTGGCTCAATTGGTtAGAGCGCCGTGCTAATAACGCGAAGGtTGCAAGTTCATACCTGCATGGGCCA 73 >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>.>......<.<<<<<<<<<<. ttgATTTTATATATTCAAAGTTACCAAAAAGCATGACTTGTAGAAGCATGCATCCCTAACACTATTCAAAGAAATGTAttggaatttttttaactaaaaa ATTTTTTAATCCTTattggaaaaaattttatgctatatgtgtgtgttaaatgttgaatattttcaatcttttatcAAGAGTAAGGATGAAATTATACCGT + 85229_PtRNAdb chr-I.trna15-Ile-AAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 15 12393383 12393456 Ile AAT 0 0 81.8 58.30 23.50 Inf Ile 106.8 Phanerogamae -NA- Dicot GGCCTATTAGCTCAGTTGGTtAGAGCGTCGTGCTAATAACGCGAAGGtCGCAGGTTCGAGACCTGCATGGGCCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CTGCTAGTATGTAAGTACTGTGATGGAAAAATGGAGAGGCAACTTACGACTTCCTAAAATATAAAcgatatttatataaattttcgAACACTTAACCAAA TTGGTAGAATTTTTTCCCTGTTTTTGTCTGTTTTGGCCCAGTTTGATTAACTTGGGTTCGGCCTGTTTCGGCCCAGTTTGACTAACTTGGGGCCACAGTC + 85230_PtRNAdb chr-I.trna16-Lys-TTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 16 16496411 16496483 Lys TTT 0 0 88.7 64.40 24.30 Inf Lys 93.7 Phanerogamae -NA- Dicot GCCGTCTTAGCTCAGCCGGTAGAGCGCATGGCTTTTAACCATGTGGtCGTGGGTTCGATTCCCACAGACGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CGGCACTCTGCAGTCGCTGGCTGATCGAGATTTGAACTTGATCTTGTTTTCATGgttacataaataaataaaatctaaaatttaagACGCTAAACGACAA gtttaattattttttattttgtttttaaggaTGTCTTTTAGAATAGAATTTCATTAATCCTATAAATTGTCTCCTCCCAACTTAAAAAAAGGTTTCCAAC + 85231_PtRNAdb chr-I.trna17-Arg-CCG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 17 27360773 27360845 Arg CCG 0 0 69.2 51.20 18.00 Inf Arg 93.1 Phanerogamae -NA- Dicot GTTCGCGTGGCCTAATGGAtAAGGCGCTCGCCTCCGGAGCGGGAGAtTGTGGGTTCGAGTCCCACCGTGAACG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTTTGGTAATTCTCCCGAGCTCAAGTTTAGCAATTGCATCTCGCAACGGTTTATGTAGCTGCTTCTCAGTTTATCATTTGACGGCACTAGAGGTATGGTA GACTGGATTTACTGTCAAGAAAAATTTTGCCGACTCCGTTTTAGCCCATCAAAAGTAGGCAGTTTGCAGTTGGGATTGTTCTGCTTTAGTTATGAGTTAT + 85232_PtRNAdb chr-I.trna18-Ser-TGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 18 30267180 30267261 Ser TGA 0 0 36.8 22.20 14.60 Inf Ser 71.7 Phanerogamae -NA- Dicot ATTGATACGTCCAAGTGGTtAAGGAGACAGACTTGAAATCTGTTGGGTATTACCTGCACAGGTTCGAACCTTGCTGTTGACG 82 .>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<...>>>>.......<<<<.<<<<<<.. GAGTGGAAAAAATGAGTCATCTTAAAGTGACGCTGGTTGAACCAACATCTATCCCTTTCCATATAGATAGGAAAGGGGTATGGCAAGGTGAATATTAGTG AATATATGTTTTCATCTTTATcatgtgttttttattttatattttttgtaggtTCTGAAATTGTGTGAGTGGAACGGTCGATATGTCCGAGTGGTTAAGG + 85233_PtRNAdb chr-I.trna19-Ser-TGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 19 30267338 30267419 Ser TGA 0 0 79.0 44.80 34.20 Inf Ser 116.0 Phanerogamae -NA- Dicot GTCGATATGTCCGAGTGGTtAAGGAGACAGACTTGAAATCTGTTGGGCACCGCCCGCGCAGGTTCGAACCCTGCTGTCGACG 82 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. CAGGTTCGAACCTTGCTGTTGACGAATATATGTTTTCATCTTTATcatgtgttttttattttatattttttgtaggtTCTGAAATTGTGTGAGTGGAACG AGCTTATTTTTCCATCTTTTTCctgtgtttttattttgaattcttTGATTGTAAATATTTACTATATGTTACGACATGATCCGAAGTTTGTGGAAATGGA + 85234_PtRNAdb chr-I.trna20-Pro-AGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 20 30471686 30471757 Pro AGG 0 0 63.0 30.60 32.40 Inf Pro 109.1 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGTGAGAGGtCCCGAGTTCAATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. tgGATGGAGTAGGAAACAATTCAGAGCATATTGTTGGAGGGAAACCTGTATCGTATGGTTaaagatatttatatatttttttaaagtaaccAAACAACCA TATTggtcttttatttttgccaTTTTCAAACCTCTTTGGCTTCTCTATTTTATTGCAcagaagcaaaaaaaaaaaaaaaatattgcgaatgagattttga + 85235_PtRNAdb chr-I.trna21-Phe-GAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 21 32458916 32458988 Phe GAA 0 0 78.3 58.40 19.90 Inf Phe 113.2 Phanerogamae -NA- Dicot GCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGtCGCGTGTTCGATCCACGCTCACCGCA 73 >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. GAACAATTATTTCAGAAGACACGCACCGACGCCAGGGATCTATAgaatttaattagtttaggttataaatataatatctGGTACCGGTTACTGTCAACAA CTTTTAGATTGGGCTAACTGAACTTCTCATTCAGCCCACAAAacccttgttttttttttttcaacttttgatTGGGCTTAGGGCAAATTTAAAGCCCATA + 85236_PtRNAdb chr-I.trna22-Cys-GCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 22 33105359 33105430 Cys GCA 0 0 82.1 59.90 22.20 Inf Cys 106.6 Phanerogamae -NA- Dicot GGGTCCATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCACCGGTTCGAACCCGGTTGGGCCCT 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AACCAACCCGGCATTTAGTTAGTGGCTAAGGTTAACGTGCTCTTcaatcaaaattcttcaaactTTGTATAAAAGAAATATCTCTGCTTTAACGCCAAAA TTCCTCTAAGTCCATtgtttttcacttgtttcatCTTGCGACATGTGTACAAACTTGTTTTATTGAAATAACATGAAGCAAGAAACTATCTTACTGACGG + 85237_PtRNAdb chr-I.trna23-Val-AAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 23 33419727 33419800 Val AAC 0 0 72.9 48.60 24.30 Inf Val 93.8 Phanerogamae -NA- Dicot GGTGTCGTGGTGTAGTTGGTtATCACGTCAGTCTAACACACTGAAGGtCTCCGGTTCGAGTCCGGGCGACGCCA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. tttcaattgccTTAATCTCGTCGAATTGTTTAGGaaaacattatatatataagtaattttCAGCATGGGAATTTTAAACTGCACATGCACCCTCACAATT acatttatctttttatatatttattttttgtggtTTGCCAAAGCCACAAGccaatcaaaaattaaatccGACATGGCGACAACAGAGGACGGAAGGAGCA + 85238_PtRNAdb chr-I.trna24-Gly-CCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 24 33491629 33491699 Gly CCC 0 0 66.0 29.20 36.80 Inf Gly 87.4 Phanerogamae -NA- Dicot GCGCATCTAGTGTAGTGGTATCATAGTACCCTCCCACGGTACTGaCCGGGGTTCGATTCCCCGGATGCGCA 71 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. cttgttttcatttttttattttaggaaTAGGGCTTCGAAAAAGTCAGGAATTGGCCCTTATTACATTTAAAGATATCAATTGTGGCTGTTGAACAGCAGG TGCTTTATATCGTCCTTttgcaaatatttttttgctaATTTCACCAGAATCTCAATCATCATCTTTGCGACCAAGTAGCTAGAAACGCTCCATGTCTGAT + 85239_PtRNAdb chr-I.trna25-iMet-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 25 33977074 33977145 iMet CAT 0 0 58.3 28.10 30.20 Inf iMet 118.7 Phanerogamae -NA- Dicot ATCAGAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGtCCCAGGATCGAAACCTGGCTCTGATA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GAACATGGTTTAAGCGAGGGGCATAATATAACTTCTATTTTATTACCTGAAAAGTCTAATGATATGGACTTTAAAAAACGGAACAATTTTATCACCAACA TGAGTGGCTTCCAACCTCTGAAACATCTTTTACTATTTTCTTAATACCTACTCCTGGAAAAATGTTAGGATAATTTTCTTATTCTCCATATAAcaaagtt + 85240_PtRNAdb chr-I.trna26-Val-CAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 26 34621985 34622058 Val CAC 0 0 82.4 54.40 28.00 Inf Val 103.7 Phanerogamae -NA- Dicot GTCTGGGTGGTGTAGTTGGTtATCACGCTAGTCTCACACACTAGAGGtCCCCGGTTCGAACCCGGGCTCAGACA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. caaatattaaatttagcAAATTTAATAACATTAACCCACAAAATTTATAACATTAACTTAGTTGCTACCTTATatgcaagaaaaataataataacaaatt ttattaaattttttgttaaagcctttttaattttttactcaataaaattttttttgttaaagtaTCCGAGAAGCTCCTAAGGCATTTTGTTCATTTTAGT + 85241_PtRNAdb chr-I.trna27-Cys-GCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 27 34635347 34635418 Cys GCA 0 0 64.7 49.50 15.20 Inf Cys 86.0 Phanerogamae -NA- Dicot GGGTCCACAGCTCAGTGGTAGAGCATATGACTGCAGATCAAGAGGtCACCGGTTCGAACCCGGTTGGGCCCT 72 >>>>>>>..>>>>.......<<<<.>.>>>.......<<<.<.....>>>>>.......<<<<<<<<<<<<. TATCTTCATAACAGTTATAACTTTCCTGCATAGGGTTGAACAGGTAGGAAATAATTATTCTCTAcaaatttgttgaaaacttACAACTTTCCGGCAAATA CTATATTCTCCTACTTTTGATTGCAAAGCAACTTTAATTAGTAGCTTTacaatgcaaaattttttgTCAAGCTTCTTGATTGAAAAAATCCATCATTCGT + 85242_PtRNAdb chr-I.trna28-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 28 34860125 34860195 Gly GCC 0 0 66.5 44.80 21.70 Inf Gly 94.4 Phanerogamae -NA- Dicot GCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGaCCCGGGTTCGATTCCCGGCTGGTGCA 71 >>>>>>>..>>.>.......<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. CATTTAGCATTATTATGACTTTGTTATCTATCAATAACAAGAAGCACCGGTGGTCTTGTAGTAACAACAAGTACCAGTGGTCTAGTACTAGAAATAACAA TCCCCTTTGAGCTGTGAGGAACACTGCGCACATGTGATGGTAGGGTCCATCACACTTCTCTGATCTTGCGATGAGACCACGCGCATCTGAGCTctaccct + 85243_PtRNAdb chr-I.trna29-Lys-CTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 29 35404880 35404952 Lys CTT 0 0 86.8 66.60 20.20 Inf Lys 107.7 Phanerogamae -NA- Dicot GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGtCGTGGGTTCGAGCCCCACGGTGGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TCTCCTTTGTCAACCTACCACAAATTTACCATTGCATTCGTGATTAAACACAAGTGATTGCGGCTTATGGGAGGaaaattataaattctaaGAAATGACA TTCTTTTGTAATAGCCGCATCCCGCGGCAGCTGCTAAACTCACCTTTGAACATTGGAATGGCCCAGACCATGATACCATCAAGAGTCATATTGTagtttt + 85244_PtRNAdb chr-I.trna30-Glu-CTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 30 35514318 35514390 Glu CTC 0 0 79.2 53.50 25.70 Inf Glu 94.2 Phanerogamae -NA- Dicot TCCGTTGTAGTCTAGTTGGTcAGGATATTCGGCTCTCACCCGAAAGaCCCGGGTTCAAGTCCCGGCAACGGAA 73 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. atttattaatgagatagagaatatttgattttatggtgtataaaatttatatagtattaagtataaaaataatttattataggATTACGCTTCCAACAAT GTcctactttttctttttctgagcgcggtaaaaggaaaataatactACTCGGACGGATTTTCCCTTTTCGCCAGATCTGAAATTTGAATGTGAGAGCATA + 85245_PtRNAdb chr-I.trna31-Val-AAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 31 35619419 35619492 Val AAC 0 0 72.9 48.60 24.30 Inf Val 93.8 Phanerogamae -NA- Dicot GGTGTCGTGGTGTAGTTGGTtATCACGTCAGTCTAACACACTGAAGGtCTCCGGTTCGAGTCCGGGCGACGCCA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TCCACGGCAGCCGAATGTCATTACATCCCATCCTTTTCGGTCCGCGACTGGTCATGGTCTATATGCAACATTAGTCACTTAAAGAACCATGAGCAGCGGT TGCAAAACTTTTTATGTTTCGTCTTGCCATCTCTGCTCTTGCAGGTTAGCGGCTAGCTTCCCAAAGCAATGAAACATGCTGAGAATTCCTGGAAGTTTTA + 85246_PtRNAdb chr-I.trna32-Asn-GTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 32 35983466 35983539 Asn GTT 0 0 84.6 58.80 25.80 Inf Asn 96.0 Phanerogamae -NA- Dicot GCTGGAATAGCTCAGTTGGTtAGAGCGTATGGCTGTTAACCATAAGGtCGGAGGTTCGAGCCCTCCTTCTAGCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ATCATAGTATCACATGACATGATGCACGGTTGGGCCGTCGGAATCTAATAATTTGTGTTATTCACATTGAAAAAGATAACGGCTTGAATAATATTAACAA TGTTTTTTGTTATTGCCAAAATCGATCTCGGTGTCGATCAGCTGAAGATTGCATTGGGCTTGGGCTTAAATGGCCAAAACATGATAAAATCACCGAttgt + 85247_PtRNAdb chr-I.trna33-Trp-CCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 33 36335436 36335507 Trp CCA 0 0 75.8 51.20 24.60 Inf Trp 105.6 Phanerogamae -NA- Dicot GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGtTGCGTGTTCGATTCACGTCGGGTTCA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTTATCTCATACTTTTATATTCCTACTATATACATGTGGATTTATAATTTGAAGAGACAATGCGGTAACTACGAGAAAACGTATGACAACCTAACGACAA tttttttaattttttattttgaccGTTTACCGTATCTACTCACGATTACCGCATCCACTCAAGTTAGTTTGACCGTTAATTGATATTTTACCGCATCTGC + 85248_PtRNAdb chr-I.trna34-Ser-GCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 34 37045525 37045610 Ser GCT 0 0 37.5 21.30 16.20 Inf Ser 58.5 Phanerogamae -NA- Dicot GCGTCtCTTcGGCCGAGTGGTtAAGGCGTGTGCCTGCTAAGTACATGGGTTTCCCCCGCGAGAGTTGGAATCTCTCAGGTCagGCA 86 >>>.>.>>...>>>..........<<<.>>>>>.......<<<<<..>>......<<..>>>>>.......<<<<<<<<.<..<<. CTGAGGTTTCCTTTTGGTTTTGAGGTTTGTGTCATACTCGGCCCAACAAAATTTGTTTGTCCAATGGAATCTGGAAGATCAATCAAGCTTCAGTCAACCA ACGCaagatattttttctttccatgATACATAGTGCCATCTGCAGTTACCTGCCTGCCCCATTAATTAATGGTTTCTTCATCATTTGCTGTCTTGTTCTA + 85249_PtRNAdb chr-I.trna35-Ala-TGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 35 37073499 37073427 Ala TGC 0 0 70.0 45.30 24.70 Inf Ala 100.6 Phanerogamae -NA- Dicot GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGcACGGGGTTCGATCCCCCGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AAATGGAATTAAAGTAATGAAGAGTCCACTTTGTACAACGCTGTAACTATAATTAGCCGTACATTGCCTTGTGGAATTGGCCAAGCACAGCCAGGCAGAA TATACATATCACAAAAGTATGAGTagattttgaactttttcgatttcaatattaattgattaaatgtaTTCAATTATTTGGGGACATAACTAGTAAGTGT - 85250_PtRNAdb chr-I.trna36-Trp-CCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 36 36551721 36551650 Trp CCA 0 0 32.2 25.70 6.50 Inf Trp 54.1 Phanerogamae -NA- Dicot AGATTCGTCACACAATGGTAGCGCTTCTGACTCCAGATCAGAAGGtTGCATGTTCGACTCACGTCGGGTTCA 72 .>>>>>>...>.>.......<.<..>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<.. ACTTAAAAGATTAGCATACTTGATGTCAATAGTTGATTACACTCAGTTCCATTGATAGATGGCGACAGCCATTATCGATGTAATTCCTTCCATTTATGAC ATTCCCTAGatcctttcctttttatttttattccatTTTCAGTATAGGATGGCAACAGATCCCTGCGACTGCAACGCTGCAAACTTATGCTGCAGAAACT - 85251_PtRNAdb chr-I.trna37-Val-AAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 37 35253864 35253791 Val AAC 0 0 72.9 48.60 24.30 Inf Val 93.8 Phanerogamae -NA- Dicot GGTGTCGTGGTGTAGTTGGTtATCACGTCAGTCTAACACACTGAAGGtCTCCGGTTCGAGTCCGGGCGACGCCA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ttcttccttttcttcttgtgtAGGAAGGTTGAATTTCGTGCGGGACCGTTAACAGCCCCATAACAAACGATTTGCTATCTTTGTCTGCTTTTCATCATGT TGAATATTTTCACATCTGAAATATATTTGGTTTGTGTTGATTTTGTCACATTTCACTATCTTATAAATTTACACTATGCATAGATATAAGCAAATCAGAG - 85252_PtRNAdb chr-I.trna38-Lys-CTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 38 35002367 35002295 Lys CTT 0 0 86.8 66.60 20.20 Inf Lys 107.7 Phanerogamae -NA- Dicot GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGtCGTGGGTTCGAGCCCCACGGTGGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CAGACTATGTATGCTTAGGTGAAGGAGTGCAGCTTGGTGTAACCAGTACCAATACTTCTACTACAAATTTAAATGCTTAAACAAGACGTCATTACAAAAT TTGTTTATTTGCATATCTTTTTGCTTTTGCAAGCTTTAAAATTCAGAAGTAAAGAAATGTAAACAAAGTAGTACTAGCTGAAAAACacttaatatttcaa - 85253_PtRNAdb chr-I.trna39-Tyr-GTA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 39 34446874 34446787 Tyr GTA 34446837 34446823 74.4 42.90 31.50 Inf Tyr 111.8 Phanerogamae -NA- Dicot CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGtCGCTGGTTCGAATCCGGCAGGTCGGA 73 >>>>>>>..>>>>........<<<<.>>>>>......................<<<<<.....>>>>>.......<<<<<<<<<<<<. GTTGGCAAGTGATAAAATTCATCGCAGAGGAGCGtaaatttagattttaaatACAGGAgaagaatgattttataatttttaaggaaagaagaaataaaat CACTTATTTTCTGTCTTTTCTCAACTGACtctatttaaattttacttattGTTAACAAGGTCtctatttaaattttacttttataaataaacaagATCAA - 85254_PtRNAdb chr-I.trna3-Ile-AAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 3 693136 693209 Ile AAT 0 0 81.8 58.30 23.50 Inf Ile 106.8 Phanerogamae -NA- Dicot GGCCTATTAGCTCAGTTGGTtAGAGCGTCGTGCTAATAACGCGAAGGtCGCAGGTTCGAGACCTGCATGGGCCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTCTCCTAGGTTTGATTGTCCCTCCGTTTTTTATGTTCGTCTCCTGTCTTTACAAGGTTATACAAGCTTTCATTGACATTCTACCTGCTTCTACTCAACA taatattgatttttatttttccctcCATCTTTGTCTTTTTGGGCCGATTTGTTCCCTCATCTCTTTGTCTTTTTGGGCCAATTCCTTCCCTCACCGTCCC + 85255_PtRNAdb chr-I.trna40-Ala-AGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 40 34161228 34161156 Ala AGC 0 0 63.4 38.20 25.20 Inf Ala 98.3 Phanerogamae -NA- Dicot GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGtACGGGGATCGATACCCCGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ttttttgaaagaaaaactGAATTAGGCAGGGGAACACATTTTAATGCATCAAGTTTATTATCCAAAATGAATATAGATATTCTCAGACCAACAGGCAACA TGTTTTTGTGTTTGCTATGAGTCAAGCGTGCTCTAGAACTTTTTTAAcaagtttttttaaattgtccTTAGCTTAGTATAAATGCTGATTGAGACAAACA - 85256_PtRNAdb chr-I.trna41-Leu-CAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 41 34123577 34123494 Leu CAA 0 0 79.5 54.50 25.00 Inf Leu 126.8 Phanerogamae -NA- Dicot GTCAGGATGGCCGAGTGGTctAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAagaGGgCGTGGGTTCAAATCCCACTTCTGACA 84 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>><<<...<...>>>>>.......<<<<<<<<<<<<. AACTACCGAACGTCGAAATGTTGGGAAGATGCCGGAATTAAAACGATTGGAAGTTAAAATAAGGTCCAAAATAGGTTAATGTGagaagaataataaaatt ACTTTATCGTTTTACCCTTCCACCCTATGATACAAGTTGTCGCCCTTAACATCATTGGGCCTTGCAAATCAGATAATATTCTCCTTTTACCCTTCCACTT - 85257_PtRNAdb chr-I.trna42-Ala-CGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 42 33681315 33681243 Ala CGC 0 0 68.3 44.10 24.20 Inf Ala 99.2 Phanerogamae -NA- Dicot GGGGGTGTAGCTCAtATGGTAGAGCGCTCGCTTCGCATGCGAGAGGcACGGGGTTCGATTCCCCGCACCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TGTCTTACATCATCGTGTGAGAGATCCCAGTAGCATTTGTTAAACATTTCATAGGATGGATATATACCTCTATTGACCTTGGTAGCTTGCCACCATCCAA TCGATCTCTTTTCTGCTGAAAACCTTGAACAATTCAAGGCTAGGAACCGTCGTAGTTCACAATGTCTGCCGGTGTCAatgatgcttttattttttaaaat - 85258_PtRNAdb chr-I.trna43-Ala-TGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 43 32442445 32442373 Ala TGC 0 0 61.7 46.20 15.50 Inf Ala 93.6 Phanerogamae -NA- Dicot GCGGATGTAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGcACGGGGTTCGATCCCCCGCATCTCCA 73 >.>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<.<. aaactatatattttaacattaaaaagaAACAGTTACATTTTTCAGATATTGTGTTTCATTTAGATGAttgatttgaaataaattaagcTTACAATAATCA CTCATACGGTTTTATACCACATTGTAATCTAATCGCTGAACTAAGTTGAGAGGCAATGAGTGACTGTTTTCATTTGCCCTGCTCAATATAAATCTACTAA - 85259_PtRNAdb chr-I.trna44-His-GTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 44 31948627 31948556 His GTG 0 0 63.3 34.30 29.00 Inf His 91.7 Phanerogamae -NA- Dicot GTGGCTGTAGTTTAGTGGTtAGAATTCTACGTTGTGGCCGTAGAGaCCTGGGCTCGAATCCCAGCAGCCACA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. ACGTGCTACACCCAGAAGAGAAGCAGATATACTCAGCGAGactcaattattaattttgaatagtaaGATTTTAAGTCTAGAACCGCCTGATATCATTACA AGAAATTTTCGTTCTTTTTTCGTACTCTACAGTTTGTGACAATATCACTGCCCcataaaatttcaaactttttctaCCGACATCCATCAAGAGCGCGCAT - 85260_PtRNAdb chr-I.trna45-Gly-CCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 45 30902819 30902749 Gly CCC 0 0 66.3 29.50 36.80 Inf Gly 89.7 Phanerogamae -NA- Dicot GCGCATCTGGTGTAGTGGTATCATAGTACCCTCCCACGGTACTGaCCGGGGTTCGATTCCCCGGATGCGCA 71 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. CTCTCTTGTTTCTAGTTCTTTGTATCGTATGAATGAGATGCcggttttaaatttttagtgCTCCAATTTTAGAAGAAGTTTTTAATCAAACGGCCGCAAA TATTTTGATTTCATTTCAGTTATACTAGTAGTActattttttaagttgttcACTTTCCTGGTGAAATGTGGAGGAACAAATGTGTAAATAAGCACGTTTG - 85261_PtRNAdb chr-I.trna46-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 46 30472072 30472001 Pro TGG 0 0 69.2 36.90 32.30 Inf Pro 112.8 Phanerogamae -NA- Dicot GGGCGTTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGAGTTCGATTCTCGGAACGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AATATAAAAGAATGTGCCCCTAGGATTGTTCCCATTTTGCGGAAAGGAATCAAGTTAAAGAAAAACGAGAAAAGATATTGAGTGCATTTGAAAACCGGAA ATATTTCTGGTTTTACCTATTTTTATGGCTTTTGGGCATAATCCTAGACCCAGCAGCACACGCATACGAGGCTTGGGCATCTTCGTCTTTCAACTTCGCA - 85262_PtRNAdb chr-I.trna47-Ala-TGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 47 30392944 30392872 Ala TGC 0 0 69.1 43.30 25.80 Inf Ala 101.9 Phanerogamae -NA- Dicot GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGtACAGGGTTCGATCCCCTGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TGTCCGGTTCTTCGATATCAATTTTGATTTACTGGGTCTGGGAAAGCTTGTTGCTGACTATTAAAGTACAACATGTTTGTTTTGAAAACTCTTGTCAAAT AgtacttttttcctttttgcttaTTGTTATCCGGTATAGAAACCTGCAGTAAAAGACCACAAGGTAGCAGAGCCTGGAAGTGTCCATTATCTTCCCATAC - 85263_PtRNAdb chr-I.trna48-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 48 28033319 28033249 Gly GCC 0 0 66.5 44.80 21.70 Inf Gly 94.4 Phanerogamae -NA- Dicot GCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGaCCCGGGTTCGATTCCCGGCTGGTGCA 71 >>>>>>>..>>.>.......<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. gtttttaagaaaCATGTGGTTTAAGCCTGAAAAACTATTAGATGATTGTGCTTGGACTCAAATTATTACAAAAGTGGTGTTTGATATCACATTGCAACAA CGTTCATTTTGGCCTTGGAGGGATTTTCTTATAGTAGTCCAAACTCTATGGTGCATATCAAAAGCCCAATGAATGACGTGGAAAACACAGGCGATAATCC - 85264_PtRNAdb chr-I.trna49-Met-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 49 26732601 26732516 Met CAT 26732563 26732552 49.6 33.60 16.00 Inf Met 76.3 Phanerogamae -NA- Dicot GGGGTGGTGGCGCAGTTGGCtAGCGCGTAGGTCTCATAATCCTGAGGtCGAGAGTTCAAGCGCCTCTCACCCCA 74 >>>>>>>..>>>>.........<<<<.>>>>.....................<<<<.....>>>...........<<<<<<<<<<. TTGGATGATGGGTTTTTAGGTTAGTGGCTtcgttttctcttttttggtaAATTATTAAGAGAAAAGTGTGACTGTCTATCATCAAATTGAAGGTCGACGA ttgattttatttaatgataaaagttttatttttctaagcaCTAAATGATAAGATTAGTATTTTTTCTAAGTaatataaatgataaattttttttttctaa - 85265_PtRNAdb chr-I.trna4-Glu-CTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 4 1009792 1009864 Glu CTC 0 0 69.5 43.70 25.80 Inf Glu 91.8 Phanerogamae -NA- Dicot TCCGTTGGAGTCTAGTTGGTtAGGATACTCGGCTCTCACCCGAGAGaCCCGGGTTCAAGTCCCGGCAACGGAA 73 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. GAGTGTGGGAAGCTTGGAGAAACACACTAAACCCTTGCTTGCCTCGAAactgaattaaaaaaaaagttgtctGGTTTCAAAACTTCCGCAAACACAACAA TGCTTTTTgcttctttatatatatataagtgaTAAAAAGACCTATCAAGTCTTTatacttttcaattttatttaatttaatttctatatttctcctctta + 85266_PtRNAdb chr-I.trna50-Lys-TTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 50 15048992 15048920 Lys TTT 0 0 88.7 64.40 24.30 Inf Lys 93.7 Phanerogamae -NA- Dicot GCCGTCTTAGCTCAGCCGGTAGAGCGCATGGCTTTTAACCATGTGGtCGTGGGTTCGATTCCCACAGACGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. attttatacatcAATAATGAAAATGTGAAACTTCACAAGTTTTCTACTAATATCTCACTACAAACTACAAACTTATTTATAGCAAAGCCGTTAAAGCAGT GTTTTAAGGATTATCCGTTAATATAATcacttttcatattttatattcctttatattttatttttgtcccATCTTCTATTctccaaaacccaaaaccccA - 85267_PtRNAdb chr-I.trna51-Leu-CAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 51 12791569 12791489 Leu CAG 0 0 69.5 46.80 22.70 Inf Leu 109.7 Phanerogamae -NA- Dicot GTCAAGATGGCCGAGTTGGTctAAGGCGCCAGTTTCAGGTACTGGTccgaaaGGgCATGGGTTCGAATCCCATTCTTGACA 81 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. CACTTACTAAATCAAGTCTAATCTCCAAAGatattaaatgttttaaattataatttcaagCAAACTATTAACCTTTTAATGACCCAACCTCGATAATAAT aattttcttttttgtattttggCTAAGGTTTTTTTCGTTTTCTGGCTAAGTTCGATGATGGGCCTGTTTTATTGACCAAGGCCCCATAAAAAAACCTGGG - 85268_PtRNAdb chr-I.trna52-Gln-TTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 52 8122121 8122050 Gln TTG 0 0 73.5 53.70 19.80 Inf Gln 104.8 Phanerogamae -NA- Dicot GGTTCTATGGTGTAGTGGTtAGCACTCTGGACTTTGAATCCAGCGaCCTGGGTTCGACTCCCGGTAGGACCT 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TGCAGCAAAATtagttattaaaaaaaaacagataaTAGGGTAACGTCGTTGCCTTGTTAATAGTCACTTGTATGGCCTTATAACGAAAAACAGCTAATAA TTAACCATGTCAATTGAATGAAGAACATTGAAATGGTTGATGATAGATGCAATTAACTCCCTTTTACTAGATTGTAACTTTTCTTATCCTGATGTAAAAA - 85269_PtRNAdb chr-I.trna53-Trp-CCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 53 5894538 5894467 Trp CCA 0 0 75.8 51.20 24.60 Inf Trp 105.6 Phanerogamae -NA- Dicot GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGtTGCGTGTTCGATTCACGTCGGGTTCA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AGATTTGAAGgcattatgtttttttattatttcattaatcacttatattattatatttataatttttaaataaatttactgACGAGCCTGTAACACCAGC AAATCCCGATCCCAAGCGGATCCTCTTTTTTGGCTACTTTGCCCACATATAGGGCCCTTTCGTCATTTCAGTCCTCATCGAAACTTTCCATATTTGTAAA - 85270_PtRNAdb chr-I.trna54-Ala-AGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 54 5602584 5602512 Ala AGC 0 0 63.4 38.20 25.20 Inf Ala 98.3 Phanerogamae -NA- Dicot GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGtACGGGGATCGATACCCCGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GATAGCTGACATTAGGCTTATGAGCTGCCAGAAGTCACATCGCTTAAGGACGACTGAACTCCCAATTATATAATACCAATTAAACATGGACTTAAACATC ttctttaaaaatatgtttttctttttgaaagaGATAGATAAATAGTTTTTAGGCCCGATCTATTGGGGGATTGGGCCAGTAAGAAGCCCTGAAAATTGGT - 85271_PtRNAdb chr-I.trna55-Met-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 55 5394650 5394565 Met CAT 5394612 5394601 64.2 40.70 23.50 Inf Met 104.0 Phanerogamae -NA- Dicot GGGGTGGTGGCGCAGTTGGCtAGCGCGTAGGTCTCATAATCCTGAGGtCGAGAGTTCGAGCCTCTCTCACCCCA 74 >>>>>>>..>>>>.........<<<<.>>>>.....................<<<<.....>>>>>.......<<<<<<<<<<<<. AAACTAAACGAATTCTAGAAATTTTAACTACACAATTTCTTACAAGAAGGGTCGTTACAGCCCCTAACAGCAGAAAAGAGAGGGCACAGCTACCATCCGA tactttttaatatttcGAGTACTTTACTTTAAGAGGTTGAGAGCCTTAAGCCCTAAAAATGTAGAAACGCTTTGACGAAACGACCCGGTGTCGGTTGGCG - 85272_PtRNAdb chr-I.trna56-Ile-AAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 56 5037778 5037705 Ile AAT 0 0 82.4 58.90 23.50 Inf Ile 107.0 Phanerogamae -NA- Dicot GGCCTATTAGCTCAGTTGGTtAGAGCGTCGTGCTAATAACGCGAAGGtCGCAGGTTCGAAACCTGCATGGGCCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AGTTAAGCCTAAATGTGGGCTTTGACCCATATAAGATACTCATTAGAACAAAACATGGAATACCAGTGAAATAGAGTGGATAACCACCATTTTCACAAAT ttttttacatttttactttattgctACTTCGTTAAGGGTGCGGGTGGTCGGTTCTGGGGTCAGGCCGTCTGGGATGCCTGACCATGACTTGGTAaagatc - 85273_PtRNAdb chr-I.trna57-Leu-CAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 57 4999706 4999623 Leu CAA 0 0 80.3 52.20 28.10 Inf Leu 124.8 Phanerogamae -NA- Dicot GTCAGGATGGCCGAGTGGTctAAGGCGCCAGACTCAAGTTCTGGTTCTCGTTAGAGAGCGTGGGTTCAAATCCCACTTCTGACA 84 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. GGAATTAGATAGATTAGGATCGTATGAAGTTAGGGAAATTAGATTAGATGATATGAGAACATCATCTCATTTTTGTATTGTTGTGGGCAACTACACCCAC agatttgttcttttatttcttctacACACGCCGTTTACTTCCATAAACACTCTTGCTGTCTTGCTCAGATTTTGGTTGTGCCTGATTTGCTTtcgttttt - 85274_PtRNAdb chr-I.trna58-Ala-CGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 58 4539618 4539546 Ala CGC 0 0 68.3 44.10 24.20 Inf Ala 99.2 Phanerogamae -NA- Dicot GGGGGTGTAGCTCAtATGGTAGAGCGCTCGCTTCGCATGCGAGAGGcACGGGGTTCGATTCCCCGCACCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ACGCACAAACAGAAAATCCCTTACACTTTTGGAGGAAGAAACATCTTACATACAATCCAACCATATTTAATAAGTATAACAAAAAACCTCAGTAACCCGT CAGTCACATACCATTTTGCAATAGTTCCTAAATTTGGGAACTCTCACGCAAGCCCAACGAACTCGTTTGAATGAGTATTTTAGAGCTGGGCCAACCTTTT - 85275_PtRNAdb chr-I.trna59-Arg-CCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 59 4515769 4515697 Arg CCT 0 0 74.8 55.90 18.90 Inf Arg 87.5 Phanerogamae -NA- Dicot GCGCCTGTAGCTCAGTGGAtAGAGCGTCTGTTTCCTAAGCAGAAGGtCGTAGGTTCGACCCCTACCTGGCGCG 73 >>>>>.>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<. TGTTAGATTTGTGATGGTATTAattaaggtttttgttttgttgtaataaaaaataagaaagtaagataatttttattaaaataacaaatactCTAAAGAA gtttttcaattttttttttttttttaataattctcCTTCGTCAGGCCCAACAAGCTCAAAATGAGCCCAACATTGCCATCAAAAAAATCCTCAACCCAAT - 85276_PtRNAdb chr-I.trna5-Pro-CGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 5 1080549 1080620 Pro CGG 0 0 68.5 36.10 32.40 Inf Pro 108.5 Phanerogamae -NA- Dicot GGGTGTTTGGTCTAGTGGTATGATTCTCGCTTCGGGTGCGAGAGGtCGCGAGTTCGATTCTCGCAACACCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTTCCAGCTCTGGGAATTCTTGAATTTTGCAAAACACGTCTTAGTTTTGCGATCTGTGCAGACAGAGACAAAAAGGCAACTAATTCGGAGGGTCATCAGA CATTCATGCTGTGGTTTGCTTCATTTTAGTAGTACTGATCAGATCCCAGCACTTATCCaactgaaaaaaaagaaaaaacacttTGTACTCTGAAAAAAGT + 85277_PtRNAdb chr-I.trna60-Asn-GTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 60 4238771 4238698 Asn GTT 0 0 84.6 58.80 25.80 Inf Asn 96.0 Phanerogamae -NA- Dicot GCTGGAATAGCTCAGTTGGTtAGAGCGTATGGCTGTTAACCATAAGGtCGGAGGTTCGAGCCCTCCTTCTAGCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GTTTAGCTGGCCGAACGCGCACCCTACATGTGGCTTTGCCTGAAACCTCAAAACCGCAAAAGATAGTTGAATTAtatttatgttgaaaaatataaaataa tttttgttttatttttcatgacatTTTGGGCTGGCCAGGTGAAGACTTAAAGGCCCATGGGCATATATTCCGGTTTCATAAAAAGGGTTAAGACAGTTCA - 85278_PtRNAdb chr-I.trna61-Arg-TCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 61 3678571 3678499 Arg TCT 0 0 70.3 50.10 20.20 Inf Arg 92.3 Phanerogamae -NA- Dicot GCACCCATGGCCTAATGGAtAAGGCGCCTGACTTCTAATCAGGCGAtTGTGGGTTCGAGTCCCACTGGGTGTG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. aaaattttactaaTGGATAAGGTAGTAGAATATAGGATTTAGCGGCAGCTTAAAACTTTGAatgttttttagtttttctcaATCACCACCCTTTCAATGA AATGCTTTGATCTCTGATCCCACGCCCATAgaaagtctttttttttttttttttagcttattTGCACTGATCCTATATTCATCGAGTGATAGACTGCCCC - 85279_PtRNAdb chr-I.trna62-Thr-AGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 62 3651012 3650939 Thr AGT 0 0 71.2 47.10 24.10 Inf Thr 84.4 Phanerogamae -NA- Dicot GCTCTCGTAGCTCAGTTGGTtAGAGCACCCGTTTAGTAAGCGGGAGGtCTTGAGTTCGACTCTCAACGAAAGCA 74 >>>.>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<. GACCATACTAGGGTCCCCTCATGTGAGGCTCTGACAATTAGGACCCGTTCTGTAGGTTAcatttttggaaaattgttAGAGTTTGCCATATTTAGCGCCA GGcttgtttctttgattttcttctaATCTTTCATTTTGGTAACATCCTTATTGCTTTACACAGCATTGGTAGGCATTCAGCTCAAATTTCACCCAACTAT - 85280_PtRNAdb chr-I.trna63-Val-AAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 63 3513988 3513915 Val AAC 0 0 72.9 48.60 24.30 Inf Val 93.8 Phanerogamae -NA- Dicot GGTGTCGTGGTGTAGTTGGTtATCACGTCAGTCTAACACACTGAAGGtCTCCGGTTCGAGTCCGGGCGACGCCA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. tataattttattttctttaaatatggCTATAATTAGTACTTGGAACTTGTTATTTTCTACAAAGCAGCCGATTAGAAGTTCACGAGGCACTTCCAACAAT TGTCTCTCTTTTGAGTGTCCTTTTTGCATTGGGCTCATTTTCTTGAGCCACAGCTGATGAACCTTCAGTGAAACCCAAGCAAATACTTGCTTATTGAAGC - 85281_PtRNAdb chr-I.trna64-Glu-CTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 64 2612495 2612423 Glu CTC 0 0 78.9 53.10 25.80 Inf Glu 99.2 Phanerogamae -NA- Dicot TCCGTTGTAGTCTAGTTGGTtAGGATACTCGGCTCTCACCCGAGAGaCCCGGGTTCAAGTCCCGGCAACGGAA 73 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. attatctgAAGAATTTCATTTAGAAGCCATTAATGcataattaaacatttaaacaagtatcaaaaagaaaaaaaatttaaacatgcAGCTTGTTTAACAA TATTCTTTTTTACAAGCTCCACAACCATAAAAAGATGTACTGCCAGCGAGTTTTAATTGGAACTAATGGCTGTCGTCTTCCGAAATTTTCTGAACTCCCC - 85282_PtRNAdb chr-I.trna66-Ile-AAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 66 2060594 2060521 Ile AAT 0 0 81.8 58.30 23.50 Inf Ile 106.8 Phanerogamae -NA- Dicot GGCCTATTAGCTCAGTTGGTtAGAGCGTCGTGCTAATAACGCGAAGGtCGCAGGTTCGAGACCTGCATGGGCCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. aaattcgaCGAAAAATTGATCGAGACACGGAAATGgggaaaaataaaactaatttaaagtttcgcattattattgaaatatatgatTGCTACCATCACAA GTTTTCTTCAATCTTTTTATGTTTCAATGCCCTATTACTTTTTTACCGCTATTCGTTTAGATTGGGCTTGGAACTGAGGCCAGCTTTTTTGCCCCTATTC - 85283_PtRNAdb chr-I.trna68-Ile-TAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 68 1608641 1608568 Ile TAT 0 0 81.6 62.40 19.20 Inf Ile 96.3 Phanerogamae -NA- Dicot GGACCCGTAGCTCAGTTGGTtAGAGCGTTGGTCTTATGAGCCGAAGGtCGCGAGTTCGAGCCTCGCCGGGTCCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CCATCAATACCTTTTTAGCCGTATCATGGGCATgcatataattatataaatcaaACATTATCAAATTTCCTTGATCATCACATACTTCTTTTAATTCATT aaaattaattatattatttttcttgttcacctgttcaaaattataaaatttaactaattatGCTTTATCCTCTTGTTCACCTCTTCAAACTTATAGAATT - 85284_PtRNAdb chr-I.trna6-Phe-GAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 6 1084757 1084829 Phe GAA 0 0 78.3 58.40 19.90 Inf Phe 113.2 Phanerogamae -NA- Dicot GCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGtCGCGTGTTCGATCCACGCTCACCGCA 73 >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. ATAATGGCATTGTCTAAGCTAAAAGTACTGTTGGTCTAGGCGATTTATCCCTAATTCATGACGTTTAACAAAAGCAATGAGAAACTTCTTCAAAATTCAA aaattacaaataattttGTACCTTGATTGAGAAACACTTTTGTACACCTTTTAGTTAtgtaatttcaccttttacGTACTCCTTTCAGTTATGTAATTTT + 85285_PtRNAdb chr-I.trna70-Asn-GTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 70 1491299 1491226 Asn GTT 0 0 81.8 56.30 25.50 Inf Asn 94.2 Phanerogamae -NA- Dicot GCTGGAGTAGCTCAGTCGGTtAGAGCGTATGGCTGTTAACCATAAGGtCGGAGGTTCGACCCCTCCCTCTAGCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GATCACTCTCCATTTTTACCTTTCCTTCTCGACAATATTTTAACTTGCTGCTTTGGTTTCATTATTGCGAATTTGTTATGGTAATAGTCAATTTCAACAT GTGTTATGAAGTTGAATATGATTGCTATATTTGATAGATTTTGGGCTGTTACTCCAATAGAAGGTTCATCAAACAACTTGATTTGATTGTTTGTTTAGAG - 85286_PtRNAdb chr-I.trna71-His-GTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 71 1265281 1265210 His GTG 0 0 63.0 33.70 29.30 Inf His 86.8 Phanerogamae -NA- Dicot GTGGCTGTAGTTTAGTGGTaAGAATTCCACGTTGTGGCCGTGGAGaCCTGGGCTCGAATCCCAGCAGCCACA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. AATATCACAAACACTTGGAGACTGGAGTATATTACATTACTTGATAATTTGAAAGAGCATCAGGCTATAAAGAAACTCATTTTCGATGCTCGACAATAAT ATATTGtttctcacttttttttttttttccatttccttTCCAAAATTTTACATGCACAATTGCAGTTGAGTTCCCTAGATTCTCACAAGTGACTAAGCCC - 85287_PtRNAdb chr-I.trna72-Glu-CTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 72 1011385 1011313 Glu CTC 0 0 61.0 35.20 25.80 Inf Glu 80.5 Phanerogamae -NA- Dicot TCCGTTGTGGTCTAGTTGGTcAGGATATTCGGCACTCACCCGAAAGaCCCGGGTGCAAGTCCCGGCAACGGAA 73 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. CTTGCTGTCCATAGAAAGGAATGTGCCCATCATTCCATTTAGAATTGATGCCATTTCATGGTCAAAACAATTTAGAATATTTGCTCTCCACGGCCGGCAC TTTATGTgttttttaactaaaattttctGTTCTTGATTATATATGCTAATGCAAACAACTAAACAGATATTAAATTTCAGTTCCGTCATGATTGACAGGA - 85288_PtRNAdb chr-I.trna7-Asp-GTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 7 1534017 1534088 Asp GTC 0 0 67.8 44.80 23.00 Inf Asp 92.9 Phanerogamae -NA- Dicot GTCGTTGTAGTATAGTGGTgAGTATTCCCGCCTGTCACGCGGGCGaCCCGGGTTCGATCCCCGGCAACGGCG 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TGAAAGGGCAAGACTTCTCAAAGCTTCCTCCGAGTGCACTGCTACCAAAAGTAGGATATCCATCCGACAAATGTTTAGCTTAAAGGATGACAATCAACCG TCAAGCTTTTTTCAGCCTAcctgttttcttcctttggagGGCTTGCCTTAATCACATCCGTTAAAACCCCAATTAACAGCCTACCTGTTTTCCTCCTTTG + 85289_PtRNAdb chr-I.trna8-Glu-TTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-I 8 1676390 1676455 Glu TTC 0 0 32.2 23.80 8.40 Inf Glu 36.9 trunc_start:7 Phanerogamae -NA- Dicot TCGTCCAGCGGTttAGGATGTCTGACTTTCACCCAGGAGaCCCGGGTTGGATTCCCGGCATCGGAT 66 >>>>>>.........<<<<.>>>>.........<<<<....>>>>>.......<<<<<.....<<. ATGAACCTTGTATTTTGTAAATTAGTGTGTTCGAAACTTAAACCTTGCCAGTAAGGTGCAATGAGTATAAAATGTGAACAATGTGAACAGCCGCCCGCTC TacctatttttttatataatgcCAACCAACCGAGATTTTGGCAATTCCATTTTTTACCACatgcataattaattaaaaaaaatacgtAAGTCCAATATGA + 85290_PtRNAdb chr-IV.trna10-Met-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 10 26553434 26553518 Met CAT 26553472 26553482 64.3 40.80 23.50 Inf Met 104.0 Phanerogamae -NA- Dicot GGGGTGGTGGCGCAGTTGGCtAGCGCGTAGGTCTCATAATCCTGAGGtCGAGAGTTCGAGCCTCTCTCACCCCA 74 >>>>>>>..>>>>.........<<<<.>>>>....................<<<<.....>>>>>.......<<<<<<<<<<<<. TACCTATGCTACTTGTTAGGGACTAGGGTAGTGCAGAAAATGACCAGGTGGTTTGACAATTCTTACTAGATATATGGAAGAGTTAGCCGAAGAAATCAAT CTTTTTTAAGTATGAAAATCATAACTGACAGCCCAACTTGGATAGTATGAAGTTATTCTCTCTTACTAGCTCGCCAACCTGCTGATTTACACAAACTCGT + 85291_PtRNAdb chr-IV.trna11-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 11 28853924 28853994 Gly GCC 0 0 66.5 44.80 21.70 Inf Gly 94.4 Phanerogamae -NA- Dicot GCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGaCCCGGGTTCGATTCCCGGCTGGTGCA 71 >>>>>>>..>>.>.......<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TACGTGTTAATAAATGTGAATAATTGTATTAAAGATGCTCAAATCTGCATTGGaataaattaacttaaattatagtaaatttgttaaaaattttcaagaa TATGCCTTCTCGGTtgcttttaaatattatttttagtgcaatcgtttttttttgaagaaagaagaaacttTTTCCTCCTAGGGACAAACACTGTCCTCCC + 85292_PtRNAdb chr-IV.trna12-Pro-AGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 12 30093832 30093903 Pro AGG 0 0 67.4 34.70 32.70 Inf Pro 112.3 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGAGTTCAATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CGTCTTGCTACCATCTTCTACTTTCCCAGTAGAAAAGGCGGAAAgggttttataaatattttacgtTGAAGTAGggagaaaaaagagaggaaatcaAGCA ATTGCCTTTTTTTTcagtaaaaaatgaaaatacgCCAGTCAACGAGGGAAAAACCTAACTCTTCGTTGACTTGAACAAGACAACAACATAAATTGATCTT + 85293_PtRNAdb chr-IV.trna13-Thr-AGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 13 30964262 30964335 Thr AGT 0 0 76.0 48.40 27.60 Inf Thr 90.6 Phanerogamae -NA- Dicot GCTCTCGTAGCTCAGTTGGTtAGAGCACCCGTTTAGTAAGCGGGAGGtCTTGAGTTCGACTCTCAACGAGAGCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TGTTTCTGACTATCCACGCGTACTTGCAGGAGCTGTCGTTTCATTGGTTGGAAGTTGCAACTGATAAAGAAGGAAGATGTTAGGGTCAGCTTGTCAACCA AATTGTTTACTTCACAACTCACAAGCCGAGTTCACAGACCAGCCTCCATTTTTCACCACTCACAAGTATAGTTCACAGACCAGCCTCCATTTCCTGCAAC + 85294_PtRNAdb chr-IV.trna14-Gly-TCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 14 31652384 31652313 Gly TCC 0 0 73.9 46.20 27.70 Inf Gly 85.6 Phanerogamae -NA- Dicot GCGTTTGTAGTCCAACGGTtAGGATAATTGCCTTCCAAGCAATAGaCCCGGGTTCGACTCCCGGCAAACGCA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. ATTCTGTTGTAAAatagaacaaaaacaaaacgtAGGAACTAACACCGGTGCGTTAAAGCTTCTCGAATTCAAAAGTAAAGATCCACCATACCATCCGCGC caacaaaattttttctttttcattttcattttatatttgtaatgccataattcatcaaagaGGACAACTTTATTAAACTGAAAGCAGTCCTTACATGGTA - 85295_PtRNAdb chr-IV.trna15-His-GTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 15 31145772 31145701 His GTG 0 0 63.0 33.70 29.30 Inf His 86.8 Phanerogamae -NA- Dicot GTGGCTGTAGTTTAGTGGTaAGAATTCCACGTTGTGGCCGTGGAGaCCTGGGCTCGAATCCCAGCAGCCACA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. AACTTTAATTATGGAATATCATAGGTCGAAGAGGTATAAACAAGCTAATTTGTGTTGGttagatttaataattgtaaTTAGGACTCTTCGTTCCGATGAT GTTGTCCTTTTCAATTGGACCAGAAAATACAAGTTTATTATtgtaataaaaagataaagatttcttctttatttgttaaattaaTGAAGATATCAAATAT - 85296_PtRNAdb chr-IV.trna16-Gly-CCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 16 30539473 30539403 Gly CCC 0 0 66.3 29.50 36.80 Inf Gly 89.7 Phanerogamae -NA- Dicot GCGCATCTGGTGTAGTGGTATCATAGTACCCTCCCACGGTACTGaCCGGGGTTCGATTCCCCGGATGCGCA 71 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TCTCCTTTTCCTACCTGTGAGAGCAGATTGCAAGTGCTGATCCTTTCCTATCGATTTCTGCTGTGAAAGAAACTTCAACTGAAGGTTTAACCAACAACAA ACTTTCAGACCTTGTGCCTTTTTGGGTCTGACTCGATCCTGTTAAAGTCCAGACACAACCCAAAGACATGGCAAACAAAGCACGAATCCAGCGTGCCACA - 85297_PtRNAdb chr-IV.trna17-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 17 30094079 30094008 Pro TGG 0 0 69.2 36.90 32.30 Inf Pro 112.8 Phanerogamae -NA- Dicot GGGCGTTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGAGTTCGATTCTCGGAACGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTTATaagattttcaaatttttccacggatgaaatttaaatattatggtaaaggacatttttttgttttccttgtaTAAAGACCCACAAAAAGATGTGGT TCAAAAGATCAATTTATGTTGTTGTCTTGTTCAAGTCAACGAAGAGTTAGGTTTTTCCCTCGTTGACTGGcgtattttcattttttactgAAAAAAAAGG - 85298_PtRNAdb chr-IV.trna18-Ser-AGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 18 29719008 29718927 Ser AGA 0 0 76.3 42.00 34.30 Inf Ser 106.9 Phanerogamae -NA- Dicot GTGGGCGTGCCGGAGTGGTtATCGGGCATGACTAGAAATCATGTGGGCTCAGCCCGCGCAGGTTCGAATCCTGCCGCTCACG 82 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. ACATGAACCAAAAAAAACCAACCGATAGCAGAAAATCAATTTCCAACTCGGTTCAAGTGTTCAAGCACATGATGGTCTTCTTGGCAGGTTTATTAACATT AAGATAATAATGTTTTGGTTTAAGGTTTCCTCCGAAGTCTCAAAGtatgttttaattattgaaactttaaTTGTTGGGCTGCAAccattgattttatatt - 85299_PtRNAdb chr-IV.trna19-Arg-TCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 19 28031072 28031000 Arg TCT 0 0 69.9 49.40 20.50 Inf Arg 99.6 Phanerogamae -NA- Dicot GCGCCTGTGGCCTAATGGAtAAGGCGTCTGACTTCTAATCAGACGAtTGTGGGTTCGAGTCCCACCAGGCGTG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ACAGTGTTCATAGCAGCTGTTTTACGTACTTTGCTAGCGGCCAATATGTACGGTCCTAATCATTCGTTGAATAAATGTTCTTAGGTGGAAGATGACGCCA ACCTGAtatttcttttcaatattttttttctttcctagaAGATTCACTTCAAAAGATTAATTGGGCTTCCCAAAACAAAACTGAAATTGTTATCATAAGC - 85300_PtRNAdb chr-IV.trna1-Pro-AGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 1 1477115 1477186 Pro AGG 0 0 67.4 34.70 32.70 Inf Pro 112.3 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGAGTTCAATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CTTCTCCCATCCTCACAAAGTCTAGTaccaaaattttaacttatttcacAAGCTGCTACGTGTGGAGTTAAAATTGGTGTAAAACTAACAGCCAGCAAAA ttattatttttaatttgtactttttttttttgtgtgtatTAATTTTGGCATATGATCAACGATAGTGACGGGGCGACTCCCTCCGCAACCACAGCCTGCC + 85301_PtRNAdb chr-IV.trna20-iMet-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 20 26979860 26979789 iMet CAT 0 0 58.3 28.10 30.20 Inf iMet 118.7 Phanerogamae -NA- Dicot ATCAGAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGtCCCAGGATCGAAACCTGGCTCTGATA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TGTAATGACTCCTAACTCTGACTCTTAagtctatttttgaaattttttaaactctCTGATTCAAAGACTAGTAAATATAGTTTGAGCTATTATATCAACA AAGAGTGGCTTCCCTGATTCcctttttgttaattttttccTACCGTTCAATCAATGAACAACATTTATGAttgattattctttttttttgttcttatacT - 85302_PtRNAdb chr-IV.trna21-Tyr-GTA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 21 26119775 26119683 Tyr GTA 26119738 26119719 74.2 42.70 31.50 Inf Tyr 111.8 Phanerogamae -NA- Dicot CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGtCGCTGGTTCGAATCCGGCAGGTCGGA 73 >>>>>>>..>>>>........<<<<.>>>>>...........................<<<<<.....>>>>>.......<<<<<<<<<<<<. ttttatataccttttttttgtctaaaaaTGACAAGACTTAATGCTTCAAACAAATTGGGGAGATAAGATTAGTTATGACTAAGAGAAATGATATTGTAAA TTCATTTTCGAACTTTTCTCTTCTCAAAAGAGACCGAATATTTCAATAGCAAAAAATTcgttttttatttacttttcattaaagCAGCAAAACAAACATT - 85303_PtRNAdb chr-IV.trna22-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 22 24710599 24710528 Pro TGG 0 0 68.5 35.70 32.80 Inf Pro 111.2 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGAGTTCGATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AAACTCAGATTGCTGAAATCTAGAACAGATTTCATGCTTATCTTGTGATATTAGATGTCTAGTCAGGGAGACCACTATAGTGCCAATATGAGAATAAAAT TTTTATATGAGGCTtttgatataataataataagacaATCCTGGCAAGAAGGATCTGGTAGAATGAATACGGGACATGTCTGTTCCTAATCTGTCTTTTT - 85304_PtRNAdb chr-IV.trna23-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 23 24709011 24708940 Pro TGG 0 0 68.5 35.70 32.80 Inf Pro 111.2 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGAGTTCGATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GTTAAAATGTTTGCAAGAGCCAAGAGAGTATCTCCAGATAAAGGTGACATAGTGATAGCCATTACTAACTTCTGCTAAGTATCGACAACTAGGTTGTAAT TTTTACAGTTTTATCCCTACTGAAGTTAGTATTAATCTCATTGAAAGAGATATGAGAGCAGTTGGTTCTTATTTTATTGGCCAAATTTGTCTTCCAGCAC - 85305_PtRNAdb chr-IV.trna24-Ile-AAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 24 22678572 22678500 Ile AAT 0 0 69.4 50.70 18.70 Inf Ile 79.8 Phanerogamae -NA- Dicot GcCTGTTAGCTCAGTTGGTtAGAGCGTCGTGCTAATAACGCGAAGGtCGCAGGTTCGAGACCTGCATGGACCA 73 >.>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<..<. CTTCTTTTTTGTCCTTTTCATGTCCTATGAAAGGAAGAATAAACGAAGTGAGCAGTGAATTAAAGACCTTTAATTTGGATTTTAACAAATAAGTTGACAA TTAGTCTTTATTTTTGCTGAAATTTCCATTGCCGTTTCACTTTTCAGGTTCAATCAAATCCATGATTGTTGTTCCTTAACCAATGGAAGCAGTATTtcat - 85306_PtRNAdb chr-IV.trna25-Leu-CAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 25 20961484 20961404 Leu CAG 0 0 69.5 46.80 22.70 Inf Leu 109.7 Phanerogamae -NA- Dicot GTCAAGATGGCCGAGTTGGTctAAGGCGCCAGTTTCAGGTACTGGTccgaaaGGgCATGGGTTCGAATCCCATTCTTGACA 81 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. GAAATCCGTCTACGGTCTCTAAATcctaataattgattttactTCTCAAATAACTATAAATATTACACATAAGAAGCAGAATCATTCTAAAAACTCGCTT GAGAAAAAGGTTTTTTAGCTGAAGAGAACGAGAGAGACAGATAAGCTTACATATATTATTCATCAAGTTGTTTGTTTCACATAATCTCCGAATGAACTCA - 85307_PtRNAdb chr-IV.trna26-Ile-AAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 26 18305350 18305277 Ile AAT 0 0 81.8 58.30 23.50 Inf Ile 106.8 Phanerogamae -NA- Dicot GGCCTATTAGCTCAGTTGGTtAGAGCGTCGTGCTAATAACGCGAAGGtCGCAGGTTCGAGACCTGCATGGGCCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TGCGTTTCTGTCAGAGCATTACAACATGAACTCAACCTTATCGTTTCTGTCGGCTCCTGTAAATTTGTGTAACATTATCTACGAATATTTTCTCAACGTA AGattattcaattttgcaaACTTTACGTATTTGGTCCTATTTTTGCAAACTTAACGTATTTgggccctttttttttttattttgatttcgCTTGGGCCTC - 85308_PtRNAdb chr-IV.trna28-Ala-TGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 28 16195454 16195382 Ala TGC 0 0 70.0 45.30 24.70 Inf Ala 100.6 Phanerogamae -NA- Dicot GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGcACGGGGTTCGATCCCCCGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CGAGTTTTAACTAACATTGGATGGATGTCTCTCATGCACTAATGGGACTGCATTCGAGCTATacatttttttgtcatttatctGTGCAACACTAGCAAGT TTatcctttggtttttttttttccaacattttaatcataaaaaatgcTGAAACAGAGAAATTTCACTGCTGCAAGTTTCATTGTTCTCAACTTTGCAATT - 85309_PtRNAdb chr-IV.trna29-Gln-TTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 29 2713981 2713910 Gln TTG 0 0 74.2 54.70 19.50 Inf Gln 105.6 Phanerogamae -NA- Dicot GGTTCCATGGTGTAGTGGTtAGCACTCTGGACTTTGAATCCAGCGaCCTGGGTTCGACTCCCGGTGGGACCT 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. ATAAAACTTCCCAATTTGACCGGAGGTTGGTTCGTCCAATAATTTCATCCACAATAAGATAAAACAGCTGAAAATGACACACGAAAGCCTAGGAAGAGAT TATCTTGTCTCTAATCATTTTTCCCTTTACTCTTTACTTTCCAaaacaaatatgttttctgtTGCCAAGAATCGAGCTTGGGTGAAAGCCGGACAAGTCT - 85310_PtRNAdb chr-IV.trna2-Ser-TGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 2 2410517 2410597 Ser TGA 0 0 80.0 45.20 34.80 Inf Ser 110.4 Phanerogamae -NA- Dicot GTCGATATGTCCGAGTGGTtAAGGAGACAGACTTGAAATCTGTTGGGCATGCCCGCGCAGGTTCGAACCCTGCTGTCGACG 81 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>><<<<<..>>>>>.......<<<<<<<<<<<<. attttagtaTTATTGCTATTAAGTTGACCAAGGGGGTGCAATCAAAGTCCATAATTAACCGGTTTATATCCGGTGCCAGTAGCCGCTCATCGACATGATC TTCCAGTTTTTAGGGCCCAGAGTTCAGCCCAGCCACGACACTTATGGGCTGTGCCCAGTCCAGTATTTCACATATGGACAATGTGGATGGTCCTTGTTTA + 85311_PtRNAdb chr-IV.trna30-Asp-GTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 30 1202292 1202221 Asp GTC 0 0 70.4 47.40 23.00 Inf Asp 93.1 Phanerogamae -NA- Dicot GTCGTTGTAGTATAGTGGTaAGTATACCCGCCTGTCACGCGGGTGaCCCGGGTTCGATCCCCGGCAACGGCG 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TttcacatatatttttttttaacatttaattAGTTGcaaaaaacatttaaacaaTAAGTACCGGTAAATAGAATAATTTGTGAAAACTTCCCATCAACAA ATTCTATTTTTGGCAGTTATTCTGCATGGAAAAAACTGTAACTTTGTAACTTTGAGGCTGGCAAAGAGGCTCATCCCAGCCCAGAGAGTTGAAAGAATCC - 85312_PtRNAdb chr-IV.trna31-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 31 673904 673833 Pro TGG 0 0 69.2 36.90 32.30 Inf Pro 112.8 Phanerogamae -NA- Dicot GGGCGTTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGAGTTCGATTCTCGGAACGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TGCCCAGGAGACTCTTTACACTTTGGTGCGTAGGTGGCAATTGCTTACAACATTCAGATCCATTCACAGTtgaaaaaatagaaacaaGAGAAAACGACAT GTGTCAtccattttgattttcttccCTTGTACAAGGGCAATTATGTCAAATGAAATCCCCAACCAACTGCAGTCGAGTTCACTATGTACATTAACTCCCT - 85313_PtRNAdb chr-IV.trna4-Glu-TTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 4 2713657 2713728 Glu TTC 0 0 72.0 47.50 24.50 Inf Glu 101.6 Phanerogamae -NA- Dicot TCCGTTGTCGTCCAGCGGTtAGGATATCTGGCTTTCACCCAGGAGaCCCGGGTTCGATTCCCGGCAACGGAA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. ttttttagagattaaattgaaattataacCGTTGCTTGGTGAAAAACCAGCAttctttattttggtttaaaaggatttattaAGAATGCACTGTCAACCA aaattctttttcttttgattttggaAAGTATAAAAAAGGGTTCCACTGGGAGTCAGACCTAAGTCGATGGGTCCAAAGTCCAGACTTGTCCGGCTTTCAC + 85314_PtRNAdb chr-IV.trna5-Asp-GTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 5 2866565 2866636 Asp GTC 0 0 69.8 46.80 23.00 Inf Asp 94.5 Phanerogamae -NA- Dicot GTCGTTGTAGTATAGTGGTaAGTATTCCCGCCTGTCACGCGGGTGaCCCGGGTTCGATCCCCGGCAACGGCG 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TTTGGTTACTCTACTAACTCCAcctatgtataaattaatgtCACTTTGGAAAGTAACTAATATAATGAAATAGGAACGAACAGCGTCCATACATCAACAA AGGGCTGGCTTtttgtgttttctttttgtccctttttttgttttttcatttgtGTATCGCAAATACATGAGCAAGGATCAGAATAGAGatgtttcatttt + 85315_PtRNAdb chr-IV.trna6-Ala-AGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 6 12658055 12658127 Ala AGC 0 0 58.2 40.00 18.20 Inf Ala 93.8 Phanerogamae -NA- Dicot GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGtACGGGGATCGATTCCTCGTATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AAGGAAACTGAAATCGGGTTGGGGGCAGATCATCAACGGGATGATTCAAAACCGAGAGATCAAGTTGGTTAGATGTAGATTGAACAGTAAACATTCTAAG ATTGATGTTTTTCAAGGGGTTACTAATATTAATCTAAAAATTACTCAATACTGttagaattgaaaaaatatattttttaataaaagtagttcaaatttat + 85316_PtRNAdb chr-IV.trna7-Ala-AGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 7 12662116 12662188 Ala AGC 0 0 35.6 17.60 18.00 Inf Ala 69.3 Phanerogamae -NA- Dicot GGGGGTGTATCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGCGGtACGGGGATTGATGCCCCACATCTCCA 73 >>>>>>>...>>>........<<<..>>>>>.......<<<<<......>>>>.......<<<<.<<<<<<<. ATTGAAGTTGATTTCATTGCTTCATAAAAATACTTTaggatataaatatataaacttgacacTAGTTATTGATGCCAACAAAGGCTTCACCCCCGAGTGT TTTAGACATTTTCTGGACCTGGCACAACTTGCCTAATTTTACTGTCACATACTTTACTAGTGGATGGAGAGAATCCAAGTACATGGATTCTAAGTCTGTA + 85317_PtRNAdb chr-IV.trna8-Leu-CAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 8 14944878 14944959 Leu CAG 0 0 37.3 30.10 7.20 Inf Leu 73.6 Phanerogamae -NA- Dicot GTtCAAGATCGCCGAGTTGGTctAAGGCGCCAGTTTCAGGTACTGGTccgaaaGGgCATGGGTTCGAATACCATTCGTGACA 82 >>.>>.>>..>>>............<<<.>>>>>.......<<<<<...........>>>>.........<<<<<<.<<<<. GAGGACAAAATTATGGACGGTAAATGGTACTTATCGAAACTCTAATTCTAGCAACAGTTTAAGAATTGGCCATCTAGCAACATTTAACCCGAAGTTAACT CACTATCACTGTTTCTTCAGACTAAGAGGTTTGGGCTTTTTTGAGAGGAAACAGATGCCAAAATTCTGATTGggctttttctttaaagtaaGCCTAAATT + 85318_PtRNAdb chr-IV.trna9-Val-TAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IV 9 18525338 18525410 Val TAC 0 0 53.3 28.90 24.40 Inf Val 78.8 Phanerogamae -NA- Dicot GATGCTGTGGTGTAGTGGTtATCACGTTAGCCTTACACACTAAAGGtCTCCAATTCGATCCTGGGCAGTATCA 73 >>>>>>>..>>>..........<<<.>>>>.........<<<<.....>>>>.........<<<<<<<<<<<. taaaaaaaataattttgaagaattaaGGTTGGTGAAATTGAGACTTAGCCCATGATGACTATGTTAGTCACAGGGCAAGAACACCACAGTCTCTTGCACG AATGTTTAAAGTTATTGGTCTAGAATTTTGGTTGCGTTTGTCTTTAATGAaatgtctttttcttttcccattttctttttatcttttaggATCCGTATAT + 85319_PtRNAdb chr-IX.trna10-Phe-GAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 10 11566705 11566777 Phe GAA 0 0 78.3 58.40 19.90 Inf Phe 113.2 Phanerogamae -NA- Dicot GCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGtCGCGTGTTCGATCCACGCTCACCGCA 73 >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. taataaaattttgttcgtttaatttgattttaatcaaaaattaatCACCCTTCATGGTGGCttgtttgaataaaacaaTTAAGCTAAAGGTTATCAACAA TTTCTCAGTAGCCCAGCCCATTGTTCTGGACTtttaaaaagtcaaaaagtagAAGCGGACAAAAAATGTAGGCCCACAAGCTTTTAGCCTCAGAGAAGCG + 85320_PtRNAdb chr-IX.trna11-Pro-AGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 11 14097384 14097455 Pro AGG 0 0 67.4 34.70 32.70 Inf Pro 112.3 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGAGTTCAATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GACTACATGTCATTGGACGTCTAGATATGAGTCCATCCAAAGTTGGTAGGCATATTCTTGCAGAGAATATACCAATAAATAGATACTGAACATCAAGACT AACCACTTTTTATAATGTAGTAAAACATTTGAGCACATGAACAAACCCTGTTGGCTGATGGTGCAACCACATATTGTTACTGACTTTTAGATTTGTCTGT + 85321_PtRNAdb chr-IX.trna12-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 12 14099017 14099088 Pro TGG 0 0 68.5 35.70 32.80 Inf Pro 111.2 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGAGTTCGATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AACATGAATCTCCTAAGGATGAGTAGATTGGATATTAACATGAATACTTTAAAGAAAAGAGCTTATTACTATAAAATAAACATGATAAGCATCAAAAGCT AacctcctttttcttttcattgtaGAATTTAAAATCTCACATTAAAGGAATCTAGCCTGAAGTTGGTGTGAGATCTAGCCTGAAGTCaactttaaaatta + 85322_PtRNAdb chr-IX.trna13-Pro-AGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 13 14100130 14100201 Pro AGG 0 0 67.4 34.70 32.70 Inf Pro 112.3 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGAGTTCAATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TCCCACTCTAGAATGGAAATGATGCATTGAACTACAACAAAAGCAGGAGATGCAAAAACATTTGTCCTCTAATAAATAAAGACTAAACATGATAAGCAGT GACACCTATTTTTTGCCTCCAATTCCCCCTCCTCGCATATTACATTGAAAACATTTGATCGGAGGAATCTGAGCTGAAGTCAACTCTATATTTGTTTTCT + 85323_PtRNAdb chr-IX.trna14-Pro-AGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 14 14101340 14101411 Pro AGG 0 0 67.4 34.70 32.70 Inf Pro 112.3 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGAGTTCAATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TCCTACCATAGAATGGAAATGATGCATTGAACCACAACAAAAGCAGGAGATGCAAAAACATTTGTACTCTAATCGATATAGACTAAACATGATAAGCATT gccacccttttttttttttgcctccAACCCCCCCTTCCCCCTGAAACATTTGATCAGAGGAACCTGACCTGAAGTCAACTCTAAGGGTatcatgtaaaat + 85324_PtRNAdb chr-IX.trna15-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 15 14103192 14103263 Pro TGG 0 0 40.2 14.10 26.10 Inf Pro 85.6 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTCTGATTCTCGCTTTGGGTGTGAGAGGtCCCAAGTTCTATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<. CCAGAAAGAGTTGGTCCACTTAGGACAAGTCCATTGAAATTAACAGAAACCATTGgagaaaaccaaaaatacataaaaaacaCAACAATCATAAACAATT ATcccttgtttctttttaattcCCTAAACTGCAATTTCAAATACTTAATCTGGAATAAGTCATCTTTAAATGTATAATTAGAAGTTTGTTAAGTTTATAT + 85325_PtRNAdb chr-IX.trna16-Leu-TAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 16 14104993 14105064 Leu TAG 0 0 40.7 26.90 13.80 Inf Pro 74.5 IPD:-74.50 Phanerogamae -NA- Dicot GGACATTTAGTTTAGTGGTATGATTCTAGCTTTAGGTGTGAGAGGtCCCAAGTTCAATCCTTGGAATGCCCC 72 >>.>>>>..>>>.........<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<.<<. ACAGTGCAAAACCTTGGTCCTCTTGGGATGTACCACTGAATTTTAACATAAATCCTAGGAGAAAAAGAGCTAACTGATTAGAAATTTGATATCAGAATGT ACTCCCTTGCATCTTTTTCTGTTCCCTATaccttgaaaatttttatctgaGGAATCTGATTAAAAGTCAACTTGAAGagtataaaaaagaaatttatcaa + 85326_PtRNAdb chr-IX.trna17-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 17 14106115 14106186 Pro TGG 0 0 68.5 35.70 32.80 Inf Pro 111.2 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGAGTTCGATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CATTGGTGCTCTTGGGATGAGTCCAGTTAGTTAATATTAGCAGGAATCCTTGGAGAAGATACctcataattatattaaaaacaCCCCATAGCTATCAACT AGaccttgtttctttttagTATCTTGTGCTAcaatttttgatatatttggtCAGGGAATCTGGCCTGAAGTAAGCTTTCAGGTGTTAATTTTCTCTGACC + 85327_PtRNAdb chr-IX.trna18-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 18 14107268 14107339 Pro TGG 0 0 33.9 28.80 5.10 Inf Pro 61.1 Phanerogamae -NA- Dicot GGGCATTTGGCCTAGTGGTATGATTCTCGCTTTGGGTGCGAGATGtCCCGAGTTCAATTCTCAATATGCCTA 72 >>>>>>...>.>.........<.<.>>>>>.......<<<<<.......>>>.......<<<...<<<<<<. AAACATTAGTTCTCTGCAGATGAGTCCATAAAAAGTTAAAGAGGACCTTTAAGAGAAAAGCTGGTAATTAGAAATGAGAACGTTATAAACATAGAAAACT GCTCCTTAGTAAGTAAGTAGAACTAGCAAATGACTTTAGCAAGCACCTTCACCTCCTGTATGCATAGAAGACTTTGGCATTCAACTTTGCAGAGCCCCAA + 85328_PtRNAdb chr-IX.trna19-Val-CAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 19 29583613 29583686 Val CAC 0 0 56.7 39.40 17.30 Inf Val 79.6 Phanerogamae -NA- Dicot GTTTGGGTGGTGTAGTTGGTtATCACGTTAGTCTCACACACTAGAGAtCTCCGGTTCAAACCTGGGTTTAAACA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AATCAGTGATACAATACaagtgcaaaaaaaaaaaaaaaaaacaattattcaatttaatgtaTTTGATGTTTATAAGGTTTTGACTTTCTTGTAATATATG tattttatattattttatacttttgcttagcataatattttatattttttctttatttattagtaTCAATGTTATACTCTCGCTTAGCATATTTTATAAG + 85329_PtRNAdb chr-IX.trna1-Arg-ACG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 1 177690 177762 Arg ACG 0 0 71.7 49.10 22.60 Inf Arg 91.4 Phanerogamae -NA- Dicot GACTCCATGGCCCAATGGAtAAGGCGCTGGTCTACGGAACCAGAGAtTCTGGGTTCGATCCCCAGTGGAGTCG 73 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. tatattttattttttttctatgtttCCCTGCAACATGGTAGCATTAGTATGAGCCATTCAGTCAATTTTCAATATTGAAAAGTTGTCGAACATTCCAGGA GTTGGCTGCTATGTCTTGAGTTTTTGATCTTTGGAAATGGCCATGGCTGCCATGCAATGAATTGGATAATGGAAGCAGGCAGGCCTCATTCAAGGCTCGC + 85330_PtRNAdb chr-IX.trna20-Lys-CTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 20 32001298 32001370 Lys CTT 0 0 86.8 66.60 20.20 Inf Lys 107.7 Phanerogamae -NA- Dicot GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGtCGTGGGTTCGAGCCCCACGGTGGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GAAGCGAGACTTTATACGTTCAGAAATGAAGGAGCTGTAATGTGTGCATAGTGAGAGTGATACTCTATAATGTTTTAAACAGACCTTAGCTTTCCAACAA TAtaaagattttgtttttatttttttcttaattcctTTTATTAAAAGTAAGTAAAAACCTAAATTATTATAAGCAGTTAAATACATGAATTGACACTATA + 85331_PtRNAdb chr-IX.trna21-Ile-TAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 21 32886620 32886693 Ile TAT 0 0 74.9 63.20 11.70 Inf Ile 94.2 Phanerogamae -NA- Dicot GGTCCCGTAGCTCAGTTGGTtAGAGCGTTGGTCTTATGAGCCGAAGGtCGCGAGTTCGAGCCTCGCCAGGACCA 74 >>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<. gtttttatttctaaaatacAAGACAAATATATGCTCTGACAATGAATGCCAAGCCAATGTTGAAAACAAAAGTAATTGCTATTTTCCTTTGTGCGCCAAA TTTCCTTTtctattattaaataaaaaaaatgaaaaatcattaTATAAACGGTAGTATATTTTGCCCTGCAtggaaaataataacaataagcGCAAAGGAT + 85332_PtRNAdb chr-IX.trna22-Gln-CTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 22 33743551 33743622 Gln CTG 0 0 75.3 51.20 24.10 Inf Gln 103.1 Phanerogamae -NA- Dicot GGTCCCATGGTCTAGTGGTcAGGACATTGGACTCTGAATCCAGTAaCCCGAGTTCAAATCTCGGTGGGACCT 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. AAAATGTTCTTAAGAAAAAGGTTCTTAAGAATGCTCTAATATTTGCTACCAGGATGGAGTAAAGCATGAATAGCCTAAATACGAATCATGTGAGCAAAGA aatcttttatttttgtaatttgctACAGTGGGCTACATGTTGGGCTTCAAAATTCAATGGGCTAGGTATTTCCTCTTCATAGCAGAATATGTAATTTcgt + 85333_PtRNAdb chr-IX.trna23-Leu-TAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 23 34734711 34734793 Leu TAA 0 0 69.1 29.50 39.60 Inf Leu 94.2 Phanerogamae -NA- Dicot GCTGGTTTGCCCGAGAGGTtAAGGGGGCAGACTTAAGATCTGCTGCACATAAGTGCGCGTGAGTTCGAACCTCACAGCCAGCA 83 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. ATAGTGGCCGTCGGATTATGCTTGGTGTCTTCGTTTTTCTAGATGTTTCCAAGTGGAAATCAGCTTATAGCCGGACAATCAGTGGGCTTAAGCACAAGTT tgttgttttgttttgtttaaaaGCAATATTAACAAATTGTTGAACAAGGTATTTATCttaaattacataaatttattaaatttgtttggtTGAATCAATG + 85334_PtRNAdb chr-IX.trna24-Gly-TCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 24 35700445 35700516 Gly TCC 0 0 73.9 46.20 27.70 Inf Gly 85.6 Phanerogamae -NA- Dicot GCGTTTGTAGTCCAACGGTtAGGATAATTGCCTTCCAAGCAATAGaCCCGGGTTCGACTCCCGGCAAACGCA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. AACACTTCAAACAAAGAATATCCTAACCATTGCcaattgaaacaaattttgaagattttcCGTTGTTATGTAACAGAATTTGGGAAACATAATTCAACAG TGCctaaatgtttaaaataattttttcctttttctgtcACTCTTTTTCACTACTTTCCATTTTTATAAGTTCACACAATATTAGATCTGGTCAgacaatt + 85335_PtRNAdb chr-IX.trna25-Asp-GTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 25 35901794 35901865 Asp GTC 0 0 67.8 44.80 23.00 Inf Asp 91.6 Phanerogamae -NA- Dicot GTCGTTGTAGTATAGTGGTaAGTATTCCCGCCTGTCACGCGGGCGaCCCGGGTTCGATCCCCGGCAACGGCG 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. aactttcaaaaaaaaaaaaaactactcaTTCTTTAATTGTAcccaaaataatgaaaatagaataagCCTCATtagtcaataaaattttcacatcAATAAA gttttttttttcttttcttagtaACTGCAAATACCTTTCCGTGGCGGGAAATCCACGCTAACAGAAAAACAAACCCAAAAGTTTCgttcactttttcttc + 85336_PtRNAdb chr-IX.trna26-Val-CAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 26 35946431 35946504 Val CAC 0 0 75.8 49.70 26.10 Inf Val 98.7 Phanerogamae -NA- Dicot GTCTGGGTGGTGTAGTTGGTtATCACGCTAGTCTCACACACTAGAGGtCTCCGGTTCGAACCCGGGCTCAGACA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TGGTAGTTCAATGCGAGTTTTGAACGAATTCTGTTAACGGtccccaaaaataaaattttacttagaataatgttttaaatcgataaaaagataaaaacgT TGCATCCTCCACTTTCGTTTTTGACCTTTTACCTCCATCTTtcactttcctttccttttttgctttttaccTTCTTAATTTCTCATGCATCTGATCAAAT + 85337_PtRNAdb chr-IX.trna27-Val-AAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 27 36550374 36550447 Val AAC 0 0 72.9 48.60 24.30 Inf Val 93.8 Phanerogamae -NA- Dicot GGTGTCGTGGTGTAGTTGGTtATCACGTCAGTCTAACACACTGAAGGtCTCCGGTTCGAGTCCGGGCGACGCCA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AAGGACTGGAGTCAATAACTAAAACGTATATTCACGGGGTGGGGTTACATTTATCTTCTCTTCTAATTATACTAATGTTTTTTTTGTAAGAAGGCGTCAA ATTGCTTAAGAATCTGTTTTCTCTTTtgcatttttactttttccgATTCCGTTTTAAGCCATTtgctttttcacttttttccGGATTCCATTTTAAGCTT + 85338_PtRNAdb chr-IX.trna28-Tyr-GTA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 28 36618605 36618695 Tyr GTA 36618642 36618659 23.5 12.80 10.70 Inf Tyr 26.3 Phanerogamae -NA- Dicot CCCATCTTAGCTCAGTTGGTAGGGCGGAGGAGTGTAGATACTTAGGtAGCTGGTTAGAATCAGGCAGGTCGGA 73 >>.>>>>..>>>>........<<<<.>>>.>.........................<.<<<.....>>>.>.......<.<<<<<<<.<<. TGCCTCCTGTGAATTTGTCCAACTGTACAGGGTAGACCTCGATTCTACTCCCAAGTGATTTGATGGTTCAAATTGCAAGTACTGGACCTTGTTCATCAAC TAATTGTATACTTTCCATTTTGCTCAAAGCTGGGCCTAACAAGTCCCAGATGAGCATCCCGCTATTGAAAATTTGATTGTTCAGTCATGCAATAGAGTCA + 85339_PtRNAdb chr-IX.trna29-His-GTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 29 36682574 36682645 His GTG 0 0 63.3 34.30 29.00 Inf His 87.4 Phanerogamae -NA- Dicot GTGGCTGTAGTTTAGTGGTaAGAATTCTACGTTGTGGCCGTAGAGaCCTGGGCTCGAATCCCAGCAGCCACA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. GATCAACGACCAAGGAGAAAGGAGTCATTTTCACGTGTTGTCGTTGAATTCAACCTGTCATAGAATGGTACTTAGTTGGAGGATGCCCACATTTGGGGAA tttcctcttttttccccttattttttatgaacaaAGCTGTGTCACATGGATCAAATAGTAAAAGTTCAAAGACCTTTTACTTTTCTCATGGTTTTTCTCA + 85340_PtRNAdb chr-IX.trna30-Tyr-GTA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 30 37889085 37889179 Tyr GTA 37889122 37889143 74.1 42.60 31.50 Inf Tyr 111.8 Phanerogamae -NA- Dicot CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGtCGCTGGTTCGAATCCGGCAGGTCGGA 73 >>>>>>>..>>>>........<<<<.>>>>>.............................<<<<<.....>>>>>.......<<<<<<<<<<<<. AGACTTAATAATCTGCCTAGGTACCTAAAAAATTCATTCACGAACACCAATAATGGCGATATAGTCGTGATTTCTTGTCACCTTTGCACCAGTTCTCAAA TTTTTGTATTGTCTTCCCCTGCACGTGGCCAACGCAAAAGGGACAATTCCATGTTCCATACAGTTAAAACTGTTTTAACCACCTCAAAAAAACAGAGTCT + 85341_PtRNAdb chr-IX.trna32-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 32 38181151 38181221 Gly GCC 0 0 43.4 29.30 14.10 Inf Gly 69.9 Phanerogamae -NA- Dicot GCACCAGGTGCCTAGTGGTAGAATAGTACCCTGCCACGGTACTGaCCCGGGTTCGATTCCCGGCTGGTGCA 71 >>>>>>>..>..>.......<..<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. ATTACAAGGCTCCTAAGCTCCAACTGAAATGTGTGGTTCAAATCTTCGAAATCAAAGCTATCTCACGActtaaatttagttttttccGGACGCTTAGCGG CTACTTGATTCTAATCAATATTTTCTGAaaagttttttaattattggaattatttgataaatattttatatttaccgTCTGATTTTCTGTATCTTTCCGC + 85342_PtRNAdb chr-IX.trna33-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 33 38406523 38406452 Gly GCC 0 0 50.8 36.40 14.40 Inf Gly 70.5 Phanerogamae -NA- Dicot TCAaCCAGTGGTCTAGTGGTAGGATGGTACCCTGCCACGGTACGGaCCCGGGTTCGATTCCCGGGTGGTGCA 72 .>>.>>>...>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<.<<<<<.. CATGAGAGGCAACAGTGTCTGATGTTTAGTGGATGACAGCCAGTGTATATGCCATTGTTTTTTGTGGTGGGCGTttgtaaaatgaaaaagtcCCAAGGAC ATTTCGAGCTATGACGAATCTGGTGCCTCTTGTGATGGTAGGGTCTATCACTATTGTCTGATTCTTCGGATGAAATTGGTCACATCTGAGCTcgttttaa - 85343_PtRNAdb chr-IX.trna34-Asn-GTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 34 38235614 38235541 Asn GTT 0 0 78.0 55.60 22.40 Inf Asn 89.1 Phanerogamae -NA- Dicot GCTGGAGTAGCTCAGTCGGTtAGAGCGTATGGCTGTTAACCATAAGGtCGGAGGTTCGACCCCTTCCTCTAGCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. tttcaatttgagCTAATTATATCTTGGCTTGTAGGTTGCATTTATGAAGcaaagtttgaattttaattcacaTATTGGCAAGGTATCCCTTTTTGAGCAA TTTTATGGGCCAAACCTACAAAGTGTTTAGGCTTTATGGGCCTTTGGGGCTCTGCCCATTTTGGGTTTCTTGAAATTATCCTACAAAGTGTTGTAGGTGG - 85344_PtRNAdb chr-IX.trna35-Ser-CGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 35 38126521 38126440 Ser CGA 0 0 76.0 44.30 31.70 Inf Ser 115.2 Phanerogamae -NA- Dicot GTCGATATGTCCGAGTGGTtAAGGAGACAGACTCGAAATCTGTTGGGCCCTGCCTGCGCAGGTTCGAATCCTGCTGTCGACG 82 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. AAATACTATGTGTGTTGAAAGCACCCGCCAGGGAAATTGTTCCATTCCTTCTGCGGAAGGATGCAAGTTTTGATGCTAGGTAAGTCCGTCAGCTGAAGTG ACTAAAAACCCTTTTGGGTTCTAGAGCAAGGCACATATTGGAGCTCTCCTCTCCTGTGTAAATCATGACATGACGGCCCAACCCCATCGATCAGTGGGTT - 85345_PtRNAdb chr-IX.trna36-Leu-CAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 36 37228978 37228895 Leu CAA 0 0 80.5 54.00 26.50 Inf Leu 128.6 Phanerogamae -NA- Dicot GTCAGGATGGCCGAGTGGTctAAGGCGCCAGACTCAAGTTCTGGTCCTCGAAAGAGGGCGTGGGTTCAAATCCCACTTCTGACA 84 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. TGGGCTTTTTGGCAAGGTAAAGGAGAGCCGTTGTTATTTTggaaacaaaatcaattataaatataaatttatatataaaattcgAAAACATAGCAACAAA ACTCAACTTTTGCTAATTTAGTTACTATGGAATTTTTTACAGGAAGTGAAGTATCTAGCATTTGCTTTGAAAAACAAGGCTTGGATGAATCAATTCTAGA - 85346_PtRNAdb chr-IX.trna37-Arg-TCG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 37 36710685 36710612 Arg TCG 0 0 82.3 61.00 21.30 Inf Arg 91.9 Phanerogamae -NA- Dicot GACCGCATAGCGCAGTGGAttAGCGCGTTTGACTTCGGATCAAAAGGtCGTGGGTTCGACTCCCACTGTGGTCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GTTAAGTCAAAATGCGATGAGATATTCACATGCATGGAATATGGAAAGGGTTTCAAAAGTTTGTTTTCTATATGCAACATATGAGGCCTTGTAAGTCAAA GCTCCTTTTGCATCTTCTGGGTCCTAATGATTGGGCCGGGTTAATCTTTGACTCATCTCGTctccttttatctttttttctctgttttgGGCTTAATCCT - 85347_PtRNAdb chr-IX.trna38-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 38 36669802 36669732 Gly GCC 0 0 66.5 44.80 21.70 Inf Gly 94.4 Phanerogamae -NA- Dicot GCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGaCCCGGGTTCGATTCCCGGCTGGTGCA 71 >>>>>>>..>>.>.......<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TTGAGTAGAGGACACCCATGAAAGATCCCTCAACATGTCATTTCAATTGGCAGAATTATTcgaagagcatgaaaaaggTGCACCCAGCTAGCATAAATCC AttctttttgaataatttcatGACTACCGTGAACCGTTCGATCCCATCTCATTAACTAGGAGAGTTCAACTAGTTAGAAGGTCCATAAATTTGGTTATTT - 85348_PtRNAdb chr-IX.trna39-Cys-GCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 39 36551028 36550957 Cys GCA 0 0 82.1 59.90 22.20 Inf Cys 106.6 Phanerogamae -NA- Dicot GGGTCCATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCACCGGTTCGAACCCGGTTGGGCCCT 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TCTTTCGTTTACAAAAAAGTCAGGATGCAGGACGCATAGTTTGGACTTCCTTCTTTATAATTTGTGTTAACTAAGAAAAGTTAAGACCACCCTCCAACAT ttcaaaactttttaaatCAGTTATTTTCCTAGGtagccaaaaataaataaatttctaCAGGCATTAGGAATATGTGAGCACTGTCCTAACTCTTAATTGC - 85349_PtRNAdb chr-IX.trna3-Arg-CCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 3 1365394 1365466 Arg CCT 0 0 69.1 50.30 18.80 Inf Arg 81.2 Phanerogamae -NA- Dicot GCGCCTGTAGCTCAGTGGAtAGAGCGTCTGTTTCCTAAGCAGAAAGtCGTAGGTTCGACCCCTACCTGGCGCG 73 >>>>>.>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<. TACATCAATATAGGTTTCATTGTCAGGATCATCAATGTATTGTTAGGCGAAGACATCAATCAAGTAATGTTTTGTAAGAAATTTAACTAACGCATGTACA GTGTTAAAGCTTTTTGAACCACAACTTACAACTTTCTCACTCTCCCTACCTAAGCTCAAAGGTAGGTACCCCATAAATTTTATctccttgatttttttta + 85350_PtRNAdb chr-IX.trna40-His-GTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 40 36522723 36522619 His GTG 36522686 36522654 46.7 24.30 22.40 Inf His 79.1 Phanerogamae -NA- Dicot GTGGCTGTGGTTTAGTGGTaAGAATTCCACGTTGTGGCCGTGGAGaCCTAGGCTCGAATCCCAGCAGCCACA 72 >>>>>>>..>>>>........<<<<.>>>>>........................................<<<<<....>>.>>.......<<.<<<<<<<<<. TCTGGGTCGCACCTGTCAGGCGTTTGGTGGCTGCCTGCCGACTATCGGCCAGATCTCTCTGTTGCTTCTTTCAGCAATTAGACAAAGACACAGGCCATCA GTGCTTGCATCTTTTTCAGTGTGTCTGCCATGAGCCCATTCCCATCCTATTGGGTCTTCAATTTTGGATTTGCTTTTACGAAGACCCAACCCCAAGTAGC - 85351_PtRNAdb chr-IX.trna41-Gly-TCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 41 36275095 36275024 Gly TCC 0 0 71.3 44.40 26.90 Inf Gly 82.3 Phanerogamae -NA- Dicot GCGTCAGTAGTCCAACGGTtAGGATAATTGCCTTCCAAGCAATAGaTCCGGGTTCGACTCCCGGCTGACGCA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TGCCACTATCACTTTCCAGACCTTCAATGCTTCTTTGTTATAAAAAAGGAAGGATAAAATAGCCTTTGATAGACTAGAACGGAGCACCATCAACAAGCGG CGCGTCTTTTCCTGTTAGTTGTTCttgttttgtctttttctttggcAGAGACTACGATCCAGAACCAATCAGGAAAGAGGAAAAATCAGGCGGAAGGCCC - 85352_PtRNAdb chr-IX.trna42-Ser-AGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 42 35909861 35909780 Ser AGA 0 0 75.6 41.30 34.30 Inf Ser 109.2 Phanerogamae -NA- Dicot GTGGGCGTGCCGGAGTGGTtATCGGGCATGACTAGAAATCATGTGGGCTTCGCCCGCGCAGGTTCGAATCCTGCCGCTCACG 82 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. GCTGtaaaataaatagataaaaaggAATATAATCTGTGTGATTGCCACATTCATTATTCGTCTCAAAAGAAATGTAATTGAGGACCCATGCAGCAGCAAA TTCTTCTACCTTTCCTTTTCAATACCTGAACTATaggttattattattatttttttatgttcattAATCGGCATATCCAGAGAATGTGAAAGTTTCCCAA - 85353_PtRNAdb chr-IX.trna43-Val-TAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 43 35186504 35186432 Val TAC 0 0 77.8 43.10 34.70 Inf Val 106.5 Phanerogamae -NA- Dicot GTTGCTGTGGTGTAGTGGTtATCACGTCAGTCTTACACACTGAAGGtCCCCAGTTCGATCCTGGGCAGCAACA 73 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. attgaaatccaCTTTATGCTATCAAATTagtttttgttggaaataatTTGACCATCTTATATCACAACATATTGATTAAAACAACTGCAGCCTACCAAAC agtcttttcttccttttttgggCCATAAAGGATTTTGGTTCTGATAGTTGGACCTAGTCCAATAACACCAGTTCACACATGTTTACTGTCTTATTAGTTA - 85354_PtRNAdb chr-IX.trna44-Ala-TGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 44 34881101 34881029 Ala TGC 0 0 69.1 43.30 25.80 Inf Ala 101.9 Phanerogamae -NA- Dicot GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGtACAGGGTTCGATCCCCTGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TATCTCAAACTCCCATCCAGCTAACTTTTATTCACTTCCTACGAATCAGAAAGAAATAGAATTGCAATTAAGAGAGTGAATTATTGCCATCTTTCAGCGT TTTCCATTTTAGGATAATTTTTGTTCCTGGCCATTGGCCATTTGTTTTTGGAACTATCTTGGCAAAGGCCAAAGAGTAAATTGGAGTTTGGCCATAACTA - 85355_PtRNAdb chr-IX.trna45-Ser-GCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 45 34837749 34837668 Ser GCT 0 0 77.0 41.10 35.90 Inf Ser 105.6 Phanerogamae -NA- Dicot GTCGCTTTGGCCGAGTGGTtAAGGCGTGTGCCTGCTAAGTACATGGGTTTCACCCGCGAGAGTTCGAATCTCTCAGGCGACG 82 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. AGAATTTCAGTCTCTGACATAGACTCGAGCTTGAttggaaaaatcaaataaatcgttttttttaatatatatattttacattGCAAACAGACTATAAATC ttaaataattttttccaTCGGTCATCGTCCGATGTATGTACTTTCAACATAGTCATATTTTACCACGTCAATTGCTTCTTCCACCCGCGTCTCACCTGAT - 85356_PtRNAdb chr-IX.trna46-Leu-AAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 46 34674903 34674823 Leu AAG 0 0 65.2 51.80 13.40 Inf Leu 101.4 Phanerogamae -NA- Dicot GTTGAGATGGCCGAGTTGGTctAAGGCGCCAGATTAAGGTTCTGGTccgaaaGGgCGTGGGTTCAAATCCCAGTCTCAACA 81 >>>>>>>..>>>............<<<.>>>>>.......<<<<<............>>>>.......<<<<.<<<<<<<. ATTCCTCGTGCTTGCTAAAGTTAAAAGGGTGGTTGCCAGATTGCAGCTGAATCTGACATGTAAGAAACATTTATCTGTCATTCGAACACTTCTTGTCGAC TGATTCATATTTTTGGAATTTAATAATCTTAAATGGCCTAAAAAATAAAGACCATTTCCTTTGCTCTTCCCCCTCTTTTATTGTGAAGTGATATCATTTC - 85357_PtRNAdb chr-IX.trna47-Tyr-GTA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 47 34092087 34091997 Tyr GTA 34092050 34092033 69.8 38.30 31.50 Inf Tyr 108.3 Phanerogamae -NA- Dicot CCGACCTTAGCTCAGTTGGCAGAGCGGAGGACTGTAGATCCTTAGGtCGCTGGTTCGAATCCGGCAGGTCGGA 73 >>>>>>>..>>>>........<<<<.>>>>>.........................<<<<<.....>>>>>.......<<<<<<<<<<<<. ACTTAAAAAAGTtgaatatatgtgtatatgcaAACGTTTAGGCTGGATTTATTAAGGAGTTACAGATTCTTAAATTTAGAGATGAAAAGATGCAAGCAAA atttttacattttctttttttcttacatTATTTAGAgtagtaaaaagaaaaaatataaaacagaaaataattatttaattgattaattcatcgaaaaaaa - 85358_PtRNAdb chr-IX.trna48-Sup-CTA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 48 32030681 32030609 Sup CTA 0 0 39.0 16.90 22.10 Inf Ile 46.0 IPD:-46.00 Phanerogamae -NA- Dicot ATCCGCTTAGCTCAGAAGTcAGAGCATCGCAATCTAATTGCGATAGtCATCGGTTCGACTCCGATAGCGGCTG 73 >.>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<.<. AACAGCTTCTCTGGTCACGGgctttttatgatttttcagCCCAATCCACGAAGCCTTAGTTGAGCCCATGTGTTGTTATATGTGTGATTTATTAATCTGA TTATATTATTTACACTTTATATTAGAATCCATGTGAGATTCCATGTGTACtactattatttttctatgatttgataaattgtggtttttctctttgtctG - 85359_PtRNAdb chr-IX.trna49-Trp-CCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 49 31440315 31440244 Trp CCA 0 0 75.8 51.20 24.60 Inf Trp 105.6 Phanerogamae -NA- Dicot GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGtTGCGTGTTCGATTCACGTCGGGTTCA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. aatatggtatttgaatctcttttcctcaaaaaaaaaaaagttatatatTGGTTATGAGTAACaatcaataatatttaataatgaCTTCACATCACCGTTA AATTCCAGATCCTACCCGgatcttcctttttcttattgTTGACTCTATGGGTATGGGCTGTGGGGAAAGTGTTTTAAAGCTGCTTGACCCAATGTTCTAG - 85360_PtRNAdb chr-IX.trna4-Ser-CGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 4 2152404 2152485 Ser CGA 0 0 80.2 45.70 34.50 Inf Ser 119.2 Phanerogamae -NA- Dicot GTCGACATGTCCGAGTGGTtAAGGAGACAGACTCGAAATCTGTTGGGCATTGCCTGCGCAGGTTCGAATCCTGCTGTCGACG 82 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. AACTTTGCAATCATAGCAAGTACATGTGGTAGGCGGTCTCGTTGATAATAGAATGGGAAGTTCCAATAAGTAGttgtaagaaaatttttttagaataaCC caatggttttttttttttgtctttctaTGACAATTCACTTGCATGAACttcgtgtatatatatatatatatataattgctGCAATCTTATTGAAATGTTT + 85361_PtRNAdb chr-IX.trna50-Ser-GCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 50 29317817 29317736 Ser GCT 0 0 73.7 38.40 35.30 Inf Ser 100.4 Phanerogamae -NA- Dicot GACGCTTTGGCCGAGTGGTtAAGGCGTGTGCCTGCTAAGTACATGGGTTCATCCCGCGAGAGTTCGAATCTCTCAGGCGTCG 82 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>......<<..>>>>>.......<<<<<<<<<<<<. GTTTTATATTAGTAGTTAAAACTAATAACAAATGTTTGTAAGGTAAAATATAGATaacatttgtttaattataattGGCTGTTCATTGCTTTCAACAAGT CAATGCTTTTTCCacttttctgttttttcataaaagtaagagaaaaaagaaaaatttgaaaacttctctattattattaatttttcttaatttccaCAAT - 85362_PtRNAdb chr-IX.trna51-Ile-AAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 51 9538320 9538247 Ile AAT 0 0 81.8 58.30 23.50 Inf Ile 106.8 Phanerogamae -NA- Dicot GGCCTATTAGCTCAGTTGGTtAGAGCGTCGTGCTAATAACGCGAAGGtCGCAGGTTCGAGACCTGCATGGGCCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TAAGACTAATTTATAATTCTTCGTCCAGTTGGGAAtcagagaaaattatgcaatgaTAGCTATAGTGGtgaaaataaccaaaaatatataacCAACAATT tttttattttattcattcaaTACTTGCAAAAAAGCATGAAAGTTAGAAACTTTGGAAATAAATTATGAGTTCAACCAGTCCATAAATCCAAACTGTCTTG - 85363_PtRNAdb chr-IX.trna52-Val-CAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 52 8605743 8605670 Val CAC 0 0 82.4 54.40 28.00 Inf Val 103.7 Phanerogamae -NA- Dicot GTCTGGGTGGTGTAGTTGGTtATCACGCTAGTCTCACACACTAGAGGtCCCCGGTTCGAACCCGGGCTCAGACA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ataatataaattttttaaaaataaaattaaaggtttataaattataattaaaataaaattaatacttaatttatataaaattcaaaaatataatgTAAAT AAATCTcatttagattttattttttatttagttatttaacaaaatattaaagttttaatatttaccacaaaatctcatttaaaatttatttttatttatt - 85364_PtRNAdb chr-IX.trna53-Arg-TCG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 53 7570653 7570580 Arg TCG 0 0 82.3 61.00 21.30 Inf Arg 91.9 Phanerogamae -NA- Dicot GACCGCATAGCGCAGTGGAttAGCGCGTTTGACTTCGGATCAAAAGGtCGTGGGTTCGACTCCCACTGTGGTCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ACCGAATTAACTGATTTAACCAGAAGGATTGAGGTTGAAGTCGATGTTTAATGGTTCTTCaacttaattattaattttaaaagcccAACTTCGCATCCAA GTTCTTTTCTAACTTCTGCTTTATTATTGGGCTTCGAAGACATTACTTTAAGGCCCAGTTAAAGCCCAAATCTTTCTCCCCTTCGTTGCTTTATTGGGCT - 85365_PtRNAdb chr-IX.trna55-Asp-GTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 55 6599181 6599110 Asp GTC 0 0 69.8 46.80 23.00 Inf Asp 94.5 Phanerogamae -NA- Dicot GTCGTTGTAGTATAGTGGTaAGTATTCCCGCCTGTCACGCGGGTGaCCCGGGTTCGATCCCCGGCAACGGCG 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TTATATATGTTCTACCTGGCTCTCACATAATCAGGCAGCAAGAAGAGTCACTGCTTAACAAACTTCGAGAATTACGTTTCCAGATCTCAAGAGACATCGA ATAAGACatttttattgttgttttccattttggcgggttaccaaaaaaaaaaaaacacctcTATGAACGACCAAcggcatttcaaaaaaaaaaaaaaaaa - 85366_PtRNAdb chr-IX.trna56-Ser-GCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 56 5418067 5417986 Ser GCT 0 0 80.5 45.20 35.30 Inf Ser 109.5 Phanerogamae -NA- Dicot GTCGCTTTGGCCGAGTGGTtAAGGCGTGTGCCTGCTAAGTACATGGGGTTTCCCCGCGAGAGTTCGAATCTCTCAGGCGACG 82 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. AATTCTGGTGGCCCTGTTAGTTTTAAACGTTGTAAAATGCCCATCAGAGCGTTTAAGATACTACTATTTACAGAAAGACAGCTGTCACATACCACTCGAT GATTAAAACTTTTACATTCAAGTCATCAGAATCTGTTAAATTTTCATTACTTAGACTTTCACCAAAATAACCGTCTGCACATTTGatcttctctctctta - 85367_PtRNAdb chr-IX.trna57-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 57 4868347 4868276 Pro TGG 0 0 70.0 38.00 32.00 Inf Pro 111.1 Phanerogamae -NA- Dicot GGGCGCTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGAGTTCGATTCTCGGAGCGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GTAAGTTGTGCTCTTATATTCGGGGTCAAAAACCCTAACCAATGTTGAAAGGGTTAGAATTCAAGAATACAAAATAAGTTAGGTGCGGAAAATTATCGTT TAATTGGGTacgttttcctttttctgcTCTGTCCCTTTTAAAATTACCTGGAGATGGGTAATTTACTAGTAGTAAAATCCtgtatttatttttccattac - 85368_PtRNAdb chr-IX.trna58-Pro-TGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 58 3605126 3605055 Pro TGG 0 0 69.2 36.90 32.30 Inf Pro 112.8 Phanerogamae -NA- Dicot GGGCGTTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGAGTTCGATTCTCGGAACGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ATGAAGTATTGCAACTCTGGGAATCGCGAGAGTTTGAACTATTTAGATTTCTTTGAGTTTTGTAGTGGTAAGTTGGTGGCCACATGTGCAAATCAAAGGC CGTCTTGTGGattttttgtcatttgttgtaggaaaataaagataaatacaaatgtttttttaatcttttcattCTGGTCCTATCAACAGACAATACGACA - 85369_PtRNAdb chr-IX.trna59-Asp-GTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 59 3080208 3080137 Asp GTC 0 0 69.8 46.80 23.00 Inf Asp 94.5 Phanerogamae -NA- Dicot GTCGTTGTAGTATAGTGGTaAGTATTCCCGCCTGTCACGCGGGTGaCCCGGGTTCGATCCCCGGCAACGGCG 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. AGGAGAGGGATAAGACATGGCCTTTTAACCAAAGAAACATTATCTTCACTGAAGGATTACTAAATATATTAAGTTAAAACTCGTACAAATTGTCAACTAA TAAAtagttttgtttcttcttttaattttttaacttctATTTTCACTGCTTAGAAACGAGAtcgttttgtttgtttttctcCAATCTCTTTTCCATGTCT - 85370_PtRNAdb chr-IX.trna5-Ala-TGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 5 3666043 3666115 Ala TGC 0 0 70.0 45.30 24.70 Inf Ala 100.6 Phanerogamae -NA- Dicot GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGcACGGGGTTCGATCCCCCGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ATCAAAGTTGGTCAGACGCTCACGGGCATTTTAGGTTTGGGcctttgacaaattttttattcaaaaagaaCAGTATACTGATTGTTGGACTTTCCAACAT GTGTCTGTCTCTccctcaattttttttatacaccGTAACAAAGTTGTGATTGACGGGACGGCGGCGTTTTCAATTTTGCCTCTCGACAGTGTGTTTGGAC + 85371_PtRNAdb chr-IX.trna60-Asp-GTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 60 1833577 1833506 Asp GTC 0 0 67.8 44.80 23.00 Inf Asp 92.9 Phanerogamae -NA- Dicot GTCGTTGTAGTATAGTGGTgAGTATTCCCGCCTGTCACGCGGGCGaCCCGGGTTCGATCCCCGGCAACGGCG 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TATGCAGCGAGACGTTAACGTTTAACTTTTGCTTCCACAAggggggaaaaaaaaacatcaaCCAAAATTTATGTGCTTTTGGTCCGTGTTAAAGCGCAAA ATTAAATGTTTTGCAAGCCAAGACTTTTGTCTGTACTGGGGATAATTGATAAGATAAagatatttcaaaatttattaattgataaaataattaaaattta - 85372_PtRNAdb chr-IX.trna61-Thr-AGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 61 1671335 1671262 Thr AGT 0 0 74.7 46.20 28.50 Inf Thr 89.4 Phanerogamae -NA- Dicot GCTTTCATAGCTCAGTTGGTtAGAGCACCCGTTTAGTAAGCGGGAGGtCTTGAGTTCGACTCTCAATGAAAGCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ACCATCCAATCAATCTATTTACTCATCCTTAAAAGTTTTGACAGGCTCTTATTTCTACTATTTGATTATAagtaatttactttttttccAAAGACAGGAA TggctttttatcattttttgcTCCTACATGGGCTGGCTTAAATCTGGGCCATTCTCTTAAATTCCAATATTTGTCTTGGGCCTGAACCTGAGCCGTCCGA - 85373_PtRNAdb chr-IX.trna62-Gly-TCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 62 1384340 1384269 Gly TCC 0 0 73.9 46.20 27.70 Inf Gly 85.6 Phanerogamae -NA- Dicot GCGTTTGTAGTCCAACGGTtAGGATAATTGCCTTCCAAGCAATAGaCCCGGGTTCGACTCCCGGCAAACGCA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. CTCTTTGCCTTTTAACGCTGACAAACCAGGGAAAAGATTGTTCTCTTAGACTTTGATTCAGCTACTAGATTTCTTAGTCCTTAACCACCCAGAGATACAA TGTATGTTTTCTCAAACAAGAAGGATAGATACACTCGAATCAACTGAAGTAAAGAAAAACAGTAATGTTGGCAACAAttatttccccttttttcTGTACT - 85374_PtRNAdb chr-IX.trna7-Ser-AGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 7 6747577 6747658 Ser AGA 0 0 76.3 42.00 34.30 Inf Ser 106.9 Phanerogamae -NA- Dicot GTGGGCGTGCCGGAGTGGTtATCGGGCATGACTAGAAATCATGTGGGCTCAGCCCGCGCAGGTTCGAATCCTGCCGCTCACG 82 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. tggAGAAATAAATCTTGATGTGAAGCAGGAAGCCACGGAATTCGATTTCTACTTGAATAGCATAGTTGAAAAAAATGTGTGATGGTAGATCTCACATCAA TTTTCGAGAATTTTCCGTATCTGCTTTTAAAGCAACAAGAATTAACACAACTATGCTTTCTGCACGGGGTTAATATCTCTTGGGATGTCTAAGCCTGAGC + 85375_PtRNAdb chr-IX.trna8-Ser-GCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 8 6846427 6846508 Ser GCT 0 0 75.1 40.40 34.70 Inf Ser 101.3 Phanerogamae -NA- Dicot GTCGCTTTGGCCGAGTGGTtAAGGCGTGTGCCTGCTAAGTACATGGGTTCATCCCGCGAGAGTTCGAATCTCTCAGGCGACG 82 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>......<<..>>>>>.......<<<<<<<<<<<<. aattataaatgagAGTAAGCTCCTACTATTTGCTTTTTCTCCTTATGATTCATTGATTGATAACGGAGTTATATTATTGTGTTTCATCGGTATCAATTAA ACTGtttccctttttcctttttttaattttttgtcaaCTTGATGCAAAAATACAACTCTTCAATCAGATTTGAGAGTGCACAAAACaaatctttataatt + 85376_PtRNAdb chr-IX.trna9-Glu-CTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-IX 9 6848935 6849007 Glu CTC 0 0 78.9 53.10 25.80 Inf Glu 99.2 Phanerogamae -NA- Dicot TCCGTTGTAGTCTAGTTGGTtAGGATACTCGGCTCTCACCCGAGAGaCCCGGGTTCAAGTCCCGGCAACGGAA 73 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TTTCACCACaaagtttttccttttccattaAATAGTTATGTATGGAGATCAGATTGCATATTTATGCTTTGTAATAGGACATTAATAGCCTCTCAACCAA AACTTCTTTTTCCTAAATAAATTTTCGATCATGTATTTCTGATAAGTAAATTCCAAATCTAATTACACCATagataagttgaaaaaaatgattttctaTT + 85377_PtRNAdb chr-VIII.trna10-Ala-CGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 10 4462026 4462098 Ala CGC 0 0 45.8 25.80 20.00 Inf Ala 68.6 Phanerogamae -NA- Dicot GGGGGTGTAGCTCAtATGGTAGAGCGCTCGCTTCGCATGCGAGAGGcACGGGGTGAGATTCTCCGCACCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CTTTCAGCACCTCTTTTGTGCCAACTGCCACGCGTTCTCTGAGACAGAGATTGACTATAAATAAATCTTGTTGAGAGGGTTCTACGATGCTCCGACTGAT TTAAgcgaatattttccttttgccTCCTATGTAGATAAAGGCTTGAAGCTCATGGGCCAAGATTAAATTTGCTTTACCACAACCATCAGGATTCAGCACT + 85378_PtRNAdb chr-VIII.trna11-Arg-CCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 11 4596488 4596560 Arg CCT 0 0 74.8 55.90 18.90 Inf Arg 87.5 Phanerogamae -NA- Dicot GCGCCTGTAGCTCAGTGGAtAGAGCGTCTGTTTCCTAAGCAGAAGGtCGTAGGTTCGACCCCTACCTGGCGCG 73 >>>>>.>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<. ttattttcagtTGCTaagataaagcaaaaaaaatcCTAAGATAGACTGCTTTCCcaatttcaaatgcaataAAACAAATCATTATCACATGATTGACAAA tacttataaaacataatcaataattttgaaatgaaaatggaggATAGGACTGGATAGACTCAAACATCATTTATAGCaatcatttattttgtttgaaatt + 85379_PtRNAdb chr-VIII.trna12-Met-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 12 5165835 5165919 Met CAT 5165873 5165883 64.3 40.80 23.50 Inf Met 104.0 Phanerogamae -NA- Dicot GGGGTGGTGGCGCAGTTGGCtAGCGCGTAGGTCTCATAATCCTGAGGtCGAGAGTTCGAGCCTCTCTCACCCCA 74 >>>>>>>..>>>>.........<<<<.>>>>....................<<<<.....>>>>>.......<<<<<<<<<<<<. AAATATGGCCTTTTCTTATTTACCAAAGTGTGGGCTTGTGGTCCAGATTTAAATAGGTTAAAGCAATCTGAAAGATACATTGAAGGTTATATTATGTCAA tgtttttctcttttctttcctttaaaaCTAATACTGATAACTACTACTCATAAAATCCTCTCACCCcgtatatttctttttttctcccttttaaaactaa + 85380_PtRNAdb chr-VIII.trna13-Tyr-GTA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 13 5183257 5183350 Tyr GTA 5183294 5183314 74.2 42.60 31.60 Inf Tyr 111.8 Phanerogamae -NA- Dicot CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGtCGCTGGTTCGAATCCGGCAGGTCGGA 73 >>>>>>>..>>>>........<<<<.>>>>>............................<<<<<.....>>>>>.......<<<<<<<<<<<<. tagattttagaataaatatttaacaaaTGTTTAACGTAGAAAATTGgtgtttcaaaacaaaataaggaaCTTTCGAAAGaacatttaaaatttctagcAG AATCtcttttttaacaaatttttgaacaattttttttgattaatACACCACAAAATTTTGGCGCCGAATCTGAGAAAAACCGTTGAATTGTTATAGccat + 85381_PtRNAdb chr-VIII.trna14-Arg-TCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 14 5779401 5779473 Arg TCT 0 0 69.9 49.40 20.50 Inf Arg 99.6 Phanerogamae -NA- Dicot GCGCCTGTGGCCTAATGGAtAAGGCGTCTGACTTCTAATCAGACGAtTGTGGGTTCGAGTCCCACCAGGCGTG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TCTATTctttcataataattattttgttttataaatcaaATGTGCACATAATGTAACAATTTGTCTCCAAAACTGTAAAATGGTTCCACAGCTTAAGTTG CTGTTTTTAAGCTTCCGCCACAATTTTTAgtagttaaaaataaatattaattgctTATGTTTCTCCACATGATTGGGTTGGTTGCTTATTTTCCAAACAC + 85382_PtRNAdb chr-VIII.trna15-Ser-AGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 15 6315740 6315821 Ser AGA 0 0 73.3 41.00 32.30 Inf Ser 102.0 Phanerogamae -NA- Dicot GTGGGCATGCCGGAGTGGTtATCGGGCATGACTAGAAATCATGTGGGCTCGGCCCGCGCAGGTTCGAATCCTGCTGCTCACG 82 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.>>>>>.<<<<<..>>>>>.......<<<<<<<<<<<<. ATCGATACTCGTCATTGCAGAAtgtcaaaatgaaaatgaaaccAGAGACAAATGTTgaagttttgattttataaaaatgagACTACAGTTCAATTGTCGG CCCTTATGTTTCAGCTTTTGGTTTGAATACTGATCATACGAAAGCGGCCCAACTCCCTGCTAGGAATGGACATGCTTGGTAAATTTGTAGTGACCCAATA + 85383_PtRNAdb chr-VIII.trna16-Gln-TTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 16 6494887 6494958 Gln TTG 0 0 74.2 54.70 19.50 Inf Gln 105.6 Phanerogamae -NA- Dicot GGTTCCATGGTGTAGTGGTtAGCACTCTGGACTTTGAATCCAGCGaCCTGGGTTCGACTCCCGGTGGGACCT 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. tttatttaaattataaacatCGTATCGAATCCATGATATTTGGCGGATAAGTACGTTTTCTTAACCATTATTATTTGGTATAGGACCTTAACTTCAGCCA TGGGCATTTTATCTGGTTTTTGTATTTCGTACTCCACATAACGTATTCTTAAGTTTCCTGCAGTTTCTCTTTTGCCCTGAAACTACTAACacttataatt + 85384_PtRNAdb chr-VIII.trna17-Leu-AAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 17 8701618 8701698 Leu AAG 0 0 74.0 52.20 21.80 Inf Leu 110.4 Phanerogamae -NA- Dicot GTTGAGATGGCCGAGTTGGTctAAGGCGCCAGATTAAGGTTCTGGTccgaaaGGgCGTGGGTTCAAATCCCACTCTCAACA 81 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. TGCTTCAAATCTGGAGCCTCCACCTGTTTGGGAAAAAATGCAATAACACTTAGTCATTTCttctataaaatatatataataatgacTCCTTTACCTCGAA TCGGCTTTTGGCCTTTCCTTTCATAAATGAAATAGTAAGTCTATTAACTGGAGACCACACCTTACCTTATCTGGATACTGTCTCGCCAGCTCTATTAACT + 85385_PtRNAdb chr-VIII.trna18-Tyr-GTA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 18 15824340 15824430 Tyr GTA 15824377 15824394 74.3 42.70 31.60 Inf Tyr 111.8 Phanerogamae -NA- Dicot CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGtCGCTGGTTCGAATCCGGCAGGTCGGA 73 >>>>>>>..>>>>........<<<<.>>>>>.........................<<<<<.....>>>>>.......<<<<<<<<<<<<. TAGTGGTTATAATTAAGGTATAAATTAAGACTGGTATATTTTTCACTGGAACGGTTTCGTAGACCTTCTTAAAGTTAACACATGTGCTCAAGTCACAGTA atcctttttttttctcttgccTTGTGGTTCTTAATGGGCTCAGAAGGTCAGTGAAAACGCCTGAACACTTTGGGCTTAGCCCCTTGCCCCTACACCGGAT + 85386_PtRNAdb chr-VIII.trna1-Arg-CCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 1 393769 393841 Arg CCT 0 0 62.8 48.10 14.70 Inf Arg 72.8 Phanerogamae -NA- Dicot GCGCCTGTAGCTCAGTGGAtAGAGCGTCTGTTTCCTAAGCAGAAAGtCATAGGTTCGACCCCTACCTGGCGCG 73 >>>>>.>..>>>>........<<<<.>>>>>.......<<<<<......>>>>.......<<<<.<.<<<<<. TGTGCCAACTTTGGTTTTTCAACCACTTGCAGGGAAAAGGTAATCATAACTTTGAAGTATatattaagtaaaaatttAACAGAACGCTTTTCATCTTCTA gttaattttttcaaaaaagaacaGAGCTAAACGAGTCATACCTCGTCCCCATAATGGCAAAGCCAGCTTGCAAGAACCAACAGGCAAGGAAACTTTTTGT + 85387_PtRNAdb chr-VIII.trna20-Met-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 20 6494369 6494285 Met CAT 6494331 6494321 64.3 40.80 23.50 Inf Met 104.0 Phanerogamae -NA- Dicot GGGGTGGTGGCGCAGTTGGCtAGCGCGTAGGTCTCATAATCCTGAGGtCGAGAGTTCGAGCCTCTCTCACCCCA 74 >>>>>>>..>>>>.........<<<<.>>>>....................<<<<.....>>>>>.......<<<<<<<<<<<<. GGGTATCCTAACCTCCAAATTGGGTTATTTTAGTATCTAACACtagcaaaaaaaatttttagtcCATCAAATTTGTAGAAGTAGAACCATAATCCCCGTT gaattttattttctgttgctcaaatatttcttctttctttcttaatgTATTTGGTTCAGTTTTGCTTCTTAATATATTGCTTCTTTGTGTATTTGGTTCA - 85388_PtRNAdb chr-VIII.trna21-Trp-CCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 21 5775987 5775916 Trp CCA 0 0 75.8 51.20 24.60 Inf Trp 105.6 Phanerogamae -NA- Dicot GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGtTGCGTGTTCGATTCACGTCGGGTTCA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. tctctctagaaggTTGGGTTTGGCGGGAATTTCCGTTGAGTGAGGTTATTTTTCATCTTATTTTGAGTTATATAAGTAATGAATGGCAGGACAAACAAGT atttcccttttttgGATTTCATCCATTACATTTGGGCTGGGCTGATGAGATTATATTTGGACCTTTGAAGACGAAAAGAAAACCAATATATTAATACAAA - 85389_PtRNAdb chr-VIII.trna22-Lys-CTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 22 5377149 5377077 Lys CTT 0 0 79.7 60.70 19.00 Inf Lys 96.3 Phanerogamae -NA- Dicot GCCTGTCTAGCTCAGTCGATAGAGCGCAAGGCTCTTAACCTTGAGGtCGTGGGTTCGAACCCCACGGTGGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AAGTCTAGTCCTCAGCTATCGTAATGACCCAAATTTCTTACGCCTAAGCTTCTCCACTGTAGTTTTCAGGCAAGATGCTGGCCACAAATTTACAGAACAA GTGGTTCGTTTTTCTACTTTgccatatatatttttttctttctcatgcAGCAGGCCCATTTTCCATCTTATAAATTATGGTTTATGTCCAGGCCCAAATT - 85390_PtRNAdb chr-VIII.trna23-Lys-CTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 23 4435588 4435516 Lys CTT 0 0 86.8 66.60 20.20 Inf Lys 107.7 Phanerogamae -NA- Dicot GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGtCGTGGGTTCGAGCCCCACGGTGGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTTAAGCTTGGTTTGGGCTTCTcaataattttgtttcataaatttatttgaaatgtgTAGTCCGGTTATCAAGTCGCCGGCATTTCACAAAACCACTCAA TGCCTTTTTGGTTACTTGAGTTAGGGTGTATGATAACAGCTTCGGCTTCGACAAAATCAGATTATGTCTCCGTCTTCCTGTGATTGTACTTTGTGCAAAA - 85391_PtRNAdb chr-VIII.trna24-Lys-TTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 24 3347454 3347380 Lys TTT 0 0 40.5 15.10 25.40 Inf Glu 42.5 IPD:-42.50 Phanerogamae -NA- Dicot TCCGTTGTCATCTAGTCcGGTcATGATGTCTGGGTTTTCCCCAGTTTTtCCCGGGTTCAAATCCCGGCAACGGAA 75 >>>>>>>..>>>............<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<. CAAATAATTAGCTTCTTTTGTTTCCCTAtgtttttttttgaagaatctTTTCTTTACCTATTTGAGTCATGTAAACATAATTGCTGCTCTAGAATAACAA TTCTTTCAACTgtgtattaattttttttatttttatgttcaaTTCTGTGAAACTTGATTGGATGGCTATAAGTTGGGTCATGTGAATGAAGGCTCCCAGC - 85392_PtRNAdb chr-VIII.trna25-Trp-CCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 25 2903667 2903596 Trp CCA 0 0 75.8 51.20 24.60 Inf Trp 105.6 Phanerogamae -NA- Dicot GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGtTGCGTGTTCGATTCACGTCGGGTTCA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CCCGAGTGTGTGACGAACTGTAGGCCTTCGGTCTTGGAGAAACCCCCAAAAGGAGAAATCTCCCAGCCTTCATGGAAGACTGAACCAAAATCCAGCAGGT AATCCCGCcacgtttttctttttttatttatttttttaattttttggttgCTTGGTTCACTGAGGAATTTTTTCTAGGACAAAGATGCACTTTGTACGAG - 85393_PtRNAdb chr-VIII.trna26-Leu-TAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 26 2595992 2595913 Leu TAG 0 0 69.5 48.50 21.00 Inf Leu 111.5 Phanerogamae -NA- Dicot GACAGTTTGGCCGAGTGGTctAAGGCGCCAGATTTAGGCTCTGGTccgaaaGGgCGTGGGTTCAAATCCCACAGCTGTCA 80 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. tttaaaagcTTTTTTAGATGTTATGTctaatatataatattcaattataagatatccattatttaaataaattaataaaaaaatttaagcttACAAAATT TActtttgaataaatttatcaGAGCCCAATAACTAGGATCAAAACTCACCCGATACTTTATCAAAGCCCAAAACTCACCCGATACATTATAAAAGCCCAA - 85394_PtRNAdb chr-VIII.trna28-Leu-CAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 28 2041404 2041321 Leu CAA 0 0 81.3 52.20 29.10 Inf Leu 125.3 Phanerogamae -NA- Dicot GTCAGGATGGCCGAGTGGTctAAGGCGCCAGACTCAAGTTCTGGTTCTCGTTAGAGAGCGTGGGTTCAAATCCCACTCCTGACA 84 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. GGGGCCTTTTAGTCATCCCTGCTGGGCACCTGCATGGTTCCTCGCTGCTTTCATTTCCGCGTTTTCAGTTCTAATGCTGCATTGGGTGAATACGCAAAAT aatttccattttcttaaGTTCAAATTATCCGGAATCTTCCAAATCAACAAACCCGGAATGATGTAGCTGGAGTAAAATATGAAAGCTCTGGAAAATGGCG - 85395_PtRNAdb chr-VIII.trna29-Glu-CTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 29 1639221 1639149 Glu CTC 0 0 78.9 53.10 25.80 Inf Glu 99.2 Phanerogamae -NA- Dicot TCCGTTGTAGTCTAGTTGGTtAGGATACTCGGCTCTCACCCGAGAGaCCCGGGTTCAAGTCCCGGCAACGGAA 73 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. CTTCAGCAGCGCAATCCCAAAGCCAtcagtattttattttttaggacGGAAACCTATTTTAATTAcagaaattaataataaacGGGAGGCTCCCGCGAAA tatgtttttttttttttaagcctTTGAAAGGCTAGCGGTAGAGTAGCCCAATCGATTCGATTGTAGTAGGCCCATAAAGAAATAGAACCTTGATCTGGGC - 85396_PtRNAdb chr-VIII.trna2-Glu-TTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 2 1119098 1119176 Glu TTC 0 0 27.9 15.10 12.80 Inf Cys 10.1 IPD:-10.10 Phanerogamae -NA- Dicot GGATCCAAaAGCTCAaaATTGGTAGAGCGCTCAaACGTTCAggTTTGGGAGGgTGGTGGTTCGAGTCCACCTGGATCCA 79 >>>>>>>...>>>>..........<<<<.>>>>.>.........<<<<<.....>>>>>.......<<<<<<<<<<<<. AGTATTCTTAGGCTTATAAGTAGTATTAAACAAAACGGGGAGTGGAGTGGTTGAGAAAGAAAGGTAATAAGATTGATGGAATTAGAACCGTCCCTGATGT TGGTAGTTCTAAATCTTGAAAGTTATTGAAGGATTTTTAACTCTTTGTTGCGCTGCTGCTGAGCCTGTTATTTATCAATGATCAGGAAATGTGATGCCCC + 85397_PtRNAdb chr-VIII.trna30-Leu-AAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 30 1528228 1528148 Leu AAG 0 0 74.0 52.20 21.80 Inf Leu 110.4 Phanerogamae -NA- Dicot GTTGAGATGGCCGAGTTGGTctAAGGCGCCAGATTAAGGTTCTGGTccgaaaGGgCGTGGGTTCAAATCCCACTCTCAACA 81 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. GCGGAGTCGACTGGAGatattttccttttgtatCGTTAAATGTCCATCTCCACTATGTCGAACCGTGTTCTAGTAAACACTGCGTCCCGCTGTCAAACCA ATCCtattggtttttattttatctttaccAATCGactaaatattatttatttttataatccaAAAAATGGCAAgttatataatattaacactaatcaaat - 85398_PtRNAdb chr-VIII.trna31-Glu-TTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 31 1099866 1099795 Glu TTC 0 0 40.2 18.20 22.00 Inf Glu 68.8 Phanerogamae -NA- Dicot TCCGTTGTCGTCCAGTGGCtAGGATGTCTGGTTTTCACCAAGGAGaCCCGGATTCTATCCCCGGCAACGGAG 72 >>>>>>>..>>>>........<<<<.>>>.>.......<.<<<....>>>>.........<<<<<<<<<<<. TGGTGGAGAACAATCAGGCAGCCAAGCTAGCCACAGTGTACCCAGAAGTTGCCTGTTTATTCAGGTCAGGTGTCTATCTTAACGTACGACCACTCCTATT CTCAGGTTTTTCCCCTCATGTTTCagtttcaaattcatcaagaATGGAACTTCTACCTTTATTTGGAAAATGTAAGAAGCCAACCTCCGTTTAATAGTTA - 85399_PtRNAdb chr-VIII.trna32-Glu-TTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 32 1099510 1099439 Glu TTC 0 0 70.9 46.40 24.50 Inf Glu 97.7 Phanerogamae -NA- Dicot TCCGTTGTCGTCCAGTGGCtAGGATGTCTGGCTTTCACCCAGGAGaCCCGGGTTCGATCCCCGGCAACGGAA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. GCGAAACTTCTCTCTAATTCAGGTTGAAATTTCGTGTGCCGAAACCAAGCAATTCCCTAAAaacaattgatttttaatgCTGATAACGAGACAATCAAAT CCATCCTTTTGCCCTCTTTTGCACTTCTTTATTTTCGCTTGGCCTTGGCGAATGACAATCAGTCCAATATCAGACGCCGTTGTTTACGTGGTACTGACAC - 85400_PtRNAdb chr-VIII.trna3-Ala-AGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 3 1225070 1225142 Ala AGC 0 0 63.4 38.20 25.20 Inf Ala 98.3 Phanerogamae -NA- Dicot GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGtACGGGGATCGATACCCCGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TACGTCAAATTATGATAGAAACTTAAGGGTTTGGATATTTTAAGCAATAATTCACATAACTTTCGAAAAGAACAATCAACAAAGCCCTACCTCCCAGTGT TTTTTGTTTAAACATTTCCCATACTTTTATTTGAAACGGAAACAAATTTGTTTTGCTACGCTTCGATTAGTGGCCCTTCAACACTCCCCAGCGACGTGGG + 85401_PtRNAdb chr-VIII.trna4-Ala-AGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 4 1225240 1225312 Ala AGC 0 0 55.2 32.60 22.60 Inf Ala 85.8 Phanerogamae -NA- Dicot GGGAATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGaACGGGGATCGATACCCCGCATCTCCA 73 >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<. CCATTTTTGTTTAAACATTTCCCATACTTTTATTTGAAACGGAAACAAATTTGTTTTGCTACGCTTCGATTAGTGGCCCTTCAACACTCCCCAGCGACGT CTCTTTCTAAACAACGAAACGTTTTCCAAGTTTTTTGTTTgagaaggaaacaaaattttttcccGCCTTTCCATCTGACTTAAAAACACGCCAATTCGTT + 85402_PtRNAdb chr-VIII.trna5-Phe-GAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 5 1412716 1412788 Phe GAA 0 0 78.3 58.40 19.90 Inf Phe 113.2 Phanerogamae -NA- Dicot GCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGtCGCGTGTTCGATCCACGCTCACCGCA 73 >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. aattaaaattgcgGGGATAGCTCAATTGGGAGAGCGATGGAAATGTGTTGTAAAGTTAGTTGTTTaactaaatatattaattaaaaataaaaacaaaatc ATAATTATTGACTTAATGTGAAGttaattgtttaaataaaaaatatttttattggaaaaaaataaaaaatgcatggATACCTCAATTGGGAGGGCGACCG + 85403_PtRNAdb chr-VIII.trna6-Glu-CTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 6 1655163 1655235 Glu CTC 0 0 77.7 52.00 25.70 Inf Glu 93.0 Phanerogamae -NA- Dicot TCCGTTGTAGTCTAGCTGGTcAGGATATTCGGCTCTCACCCGAAAGaCCCGGGTTCGAGTCCCGGCAACGGAA 73 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. CTTtctacaataaaaaaaaatcaaaggaagTCGCTGCCGCAAAGTTGTCGTCTTTTTCTCCGATCTTCTATGAGTGTCATTAGAACAACAACATCAGTGC GTTTCATTTTATCCATCCAAGCTCTTAGTGTCTGTTTATGTTAGTGTTGGGATTGGCCCTGAAATGAAATGTTCCCAATTTTCGTTGCATGGTTTTGCAT + 85404_PtRNAdb chr-VIII.trna7-Glu-CTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 7 2676818 2676890 Glu CTC 0 0 65.0 48.40 16.60 Inf Glu 83.9 Phanerogamae -NA- Dicot TCCTTTGTAGTCTAGGTGGTtAGGATACTCGGCTCTCACCCGAGAGaCCCGGGTTCAAGTCCCGGCAACGGAA 73 >>>.>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<.<<<. CAAATTGAAGCAAGGGAAGGTTACTAGCACTTTGAAGCATCTGGTTTTATGGATTAGTGTGTggaaatcaatttataaagCATCGGCATACAATTTCAAG tatgttttttttatcaattttaatttccttAGTGCAACATTTTGCTTTTGGAAAGTAGTTGTTTTCCAATATTTACaactaaaagaaataagtGAAACTA + 85405_PtRNAdb chr-VIII.trna8-Ser-GCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 8 3192468 3192549 Ser GCT 0 0 78.4 43.20 35.20 Inf Ser 107.8 Phanerogamae -NA- Dicot GTCGCTTTGGCCGAGTGGTtAAGGCGTGTGCCTGCTAAGTACATGGGGTTCCCCCGCGAGAGTTCGAATCTCTCAGGCGACG 82 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. CAAAATCTGAAAAGTAGCACAGATAGCTGATTAGCCATTTAGCCTCCAACACAATAACGTGTTGAGTCAACACACAGAAAATTAAACCATGAGAAAGAAA ATACAtttttaattctctttttattgGTTGCCAGATACGTGATACTTAAGTCTATTGACAGAACACATGTTGTCGAACTCAAACTTTAATTTGGATGTAT + 85406_PtRNAdb chr-VIII.trna9-Ala-AGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VIII 9 4032021 4032093 Ala AGC 0 0 63.4 38.20 25.20 Inf Ala 98.3 Phanerogamae -NA- Dicot GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGtACGGGGATCGATACCCCGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTTCTATTCGCTTGTAAACTGCCGGCTGTCCTGGTCTTAGTAGTTATTGGATTTGGATATCTACTTGGGGTAGATGGTAGCCCACCTTATCCAACAACAA CTGCTTTTTCTAAccttttctcaatttttccGACCCAAaaaagcccaattaaacccaGATTCTTTAGGTTGAATTAGGCCCAAAAGATCCAATTATAGCC + 85407_PtRNAdb chr-VII.trna10-Gly-CCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VII 10 2610767 2610697 Gly CCC 0 0 64.6 30.40 34.20 Inf Gly 80.7 Phanerogamae -NA- Dicot GCGCATCTGGTGTAGTGGTATCACAGTACCCTCCCACGGTACTGaCCGGGGTTCGATTCCCCGGATGCACA 71 >.>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<.<. AATGGTTTTGATGTAACTTAGGATGTCAACTTAAGTTGGCGTAAGAAAGGCCAAGAGATCTGCCATTGAAGAGAAGTTTCAAATTCGTTACTCGGTTCAA TgtgttttctcttttctttacttttgtagAATTTGGATCAATACAAAAACTGCTTAAGAACAATGGAAATGAATTTGATTAGACTGGTTCTGTAAGCCAA - 85408_PtRNAdb chr-VII.trna1-Phe-GAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VII 1 1762908 1762980 Phe GAA 0 0 76.1 54.40 21.70 Inf Phe 115.3 Phanerogamae -NA- Dicot GCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGtCACGTGTTCGATCCACGTTCACCGCA 73 >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. aaattttatgcaCTGCTAGGTAGTTGTCCACTTGTTTTGGTAAAGGTATGGCTTGACCCTGCATGTCACAAATATGTTAAAAATGCAATTTGATCAACAA ttatattattttattttgagtttcTATTTAAAGGTCCAGTGGGCTaatatccaaagaaattgGGCCCACCAAATCCAGAAgctaattattttattttaaa + 85409_PtRNAdb chr-VII.trna2-iMet-CAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VII 2 2422174 2422245 iMet CAT 0 0 58.3 28.10 30.20 Inf iMet 118.7 Phanerogamae -NA- Dicot ATCAGAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGtCCCAGGATCGAAACCTGGCTCTGATA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. aaataccCATTATTGTCCTTGAATTTTAAGTTGAGTAGTCAAAAtcaaagataaatatttttcccccaaataaaaaacattcaAGAAGAAGAACTAACAA TGAGAGCAAGCTTCTCACCCACTCAAACCTTTTTTTCCATTCAGAATGAATCCTCGATCTTTCTTTCAATAATTGATTAGACTTAGCTGTGTATACTCAA + 85410_PtRNAdb chr-VII.trna3-Phe-GAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VII 3 4139287 4139359 Phe GAA 0 0 78.3 58.40 19.90 Inf Phe 113.2 Phanerogamae -NA- Dicot GCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGtCGCGTGTTCGATCCACGCTCACCGCA 73 >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. CCAATTGCAAAGATTCGAatataaatatacataatatatatattaaaatcagATTAGAATAATACTTTCTTTAGAATTGTTCTCATGTAAAACACTGCCT TGtgtaatgatttttattttttatttttaccaaTATTATGCCAAAACGTTTTACCAATGGTTTTTTGCAACTCATTTATTGCGTAAGCCACGTGTCCAGA + 85411_PtRNAdb chr-VII.trna4-Phe-GAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VII 4 4242312 4242384 Phe GAA 0 0 78.3 58.40 19.90 Inf Phe 113.2 Phanerogamae -NA- Dicot GCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGtCGCGTGTTCGATCCACGCTCACCGCA 73 >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. TGGGAGAGTGCTTTACTTCATCTTACCCTTGCAAAACCTTTTCTTCTTATTGCAAATAGTtctataattataatagtCATTAAAGTTATTACCAGCAGAA ttattttctattcattCTTTTCTGTTCCTTTAAATAgtcttcttctttcattttattaaacattaattaaaataaatttattaacaaaacatttaattta + 85412_PtRNAdb chr-VII.trna5-Ile-TAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VII 5 6159674 6159747 Ile TAT 0 0 82.6 64.10 18.50 Inf Ile 102.3 Phanerogamae -NA- Dicot GGTCCCGTAGCTCAGTTGGTtAGAGCGTTGGTCTTATGAGCCGAAGGtCGCGAGTTCGAGCCTCGCCGGGACCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTAGAATTGACCTCAACTCGAAATTAAATACCTTTGTTTCTAATTTAGAATGGTAAGCTAGCTatgtttagataaaaaattatggGCAACCTCTTAAAAA ttaatttattttaaatccaCGCAATTCATGTATGTGAATTGTAAGGATATGACTTAGggataagagaaaaaagataCTACTGAAAATAAGCCAGACTAAA + 85413_PtRNAdb chr-VII.trna6-Leu-CAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VII 6 6529973 6530056 Leu CAA 0 0 79.5 54.50 25.00 Inf Leu 126.8 Phanerogamae -NA- Dicot GTCAGGATGGCCGAGTGGTctAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAagaGGgCGTGGGTTCAAATCCCACTTCTGACA 84 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>><<<...<...>>>>>.......<<<<<<<<<<<<. TCCCAGAAAATCTTGAGCTTAGCAAGATAGAAAGCCTCGCTGCTGCTTGAGTTTTCCAAATACAACTCTGTATAAATACACAATAGATGTTAGTATGAGG GTTACTTTTTTAATTCatccaaaggaaaaaaaacatgCATTATAGATGCACAAATGCACATCCCTAAGGATCATGTGAGAGGCTTTTCtgtttcaaaagg + 85414_PtRNAdb chr-VII.trna8-Arg-CCG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VII 8 14610796 14610868 Arg CCG 0 0 65.5 47.30 18.20 Inf Arg 91.7 Phanerogamae -NA- Dicot GATCGCGTGGCCTAATGGAtAAGGCGCTCGCCTCCGGAGCGGGAGAtTGTGGGTTCGAGTCCCATCGCGATCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. agatattgGAAAGACTTATGGCTGATtatcttcattttatttagtaataaaaatatctgaAAAGAAATCCTAATAATTTAAAGGCAGTACCCGAGTCAGA CTTCCCTTAGATTTTAGCATATATATCTCTCTAGAAATTATGAAGACTACTGTCATATTTCTCAgctaactattttttttatgagaacATGAGCTAAAAT + 85415_PtRNAdb chr-VII.trna9-Arg-ACG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VII 9 3406817 3406745 Arg ACG 0 0 69.5 46.90 22.60 Inf Arg 86.9 Phanerogamae -NA- Dicot GACTCCATGGCCCAACGGAtAAGGCGCTGGTCTACGGAACCAGAGAtTCTGGGTTCGATTCCCAGTGGAGTCG 73 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ACTTAAAACCATACATGAATTATAATTCACATAGACTTCTGTTTgaacaaataatataatacACTAAGAGAAGGAAAACTGAGTTTTCCACTAAGCAACT GCTTGTTGTATTTTTTCGACcaaatagaattattttataatttaacatgttaatataatatattaattcgTCGCCCAAAAAATCTTCCCCGACGTTGACA - 85416_PtRNAdb chr-VI.trna10-Glu-TTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 10 22819453 22819524 Glu TTC 0 0 72.0 47.50 24.50 Inf Glu 101.6 Phanerogamae -NA- Dicot TCCGTTGTCGTCCAGCGGTtAGGATATCTGGCTTTCACCCAGGAGaCCCGGGTTCGATTCCCGGCAACGGAA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. GcgtattattaaaaaaatacatggAATGCTTCAATGcgtattattgaaaaaaaatataggctaagtattgataaaattaaactcGAGGTTATGGTAGCAA ttttttttttgtggttaATTCTTTCTTGCCTATTTTTGTTACCCTTTCTGCAATCTTACTGCCTATTTATGTTGCCCTTTCTGCAATAAGAAGATCTTtg + 85417_PtRNAdb chr-VI.trna11-Leu-AAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 11 22916505 22916585 Leu AAG 0 0 74.0 52.20 21.80 Inf Leu 110.4 Phanerogamae -NA- Dicot GTTGAGATGGCCGAGTTGGTctAAGGCGCCAGATTAAGGTTCTGGTccgaaaGGgCGTGGGTTCAAATCCCACTCTCAACA 81 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. CTTTACCTGGAAAAGGGTGTGAAAGGGAACGGCCAGAGAGTGCATGCATTTAACTATTGTCGTTACCCACAGATGGGAAGCCCTGTTTCAGGACATCAAA TCACTGACATGTTTTTAACTTGCCTAATGGTAATGGTAGTCTGAAGAAAGAAAGTCGTTGTTGGATAGGCAGAGCCCCCATAAGCTTTAAAGCTTTAATG + 85418_PtRNAdb chr-VI.trna12-Glu-TTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 12 23695231 23695302 Glu TTC 0 0 72.5 48.70 23.80 Inf Glu 100.1 Phanerogamae -NA- Dicot TCCGTTGTCGTCCAGTGGCtAGGATGTCTGGCTTTCACCCAGGAGGCCCGGGTTCGATCCCCGGCAACGGAA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. ACCCAGGAAGCAAAAAGGCGGAGGCTTTAATCAAGGGCGAAACTGCTAGCTCTATTTGACAAATCGACATATAAATTCAACAGGGATCACTTATAAAAAT ttgtattttttttccacCCTATAGAAAGTGACCAATCTCTCCATTTTCATGGCTTTTGATACACTCTGAAAGTCCAGAATTAGATATTGGAGATGTTAAA + 85419_PtRNAdb chr-VI.trna13-Leu-TAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 13 25066191 25066270 Leu TAG 0 0 69.5 48.50 21.00 Inf Leu 111.5 Phanerogamae -NA- Dicot GACAGTTTGGCCGAGTGGTctAAGGCGCCAGATTTAGGCTCTGGTccgaaaGGgCGTGGGTTCAAATCCCACAGCTGTCA 80 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. ACTCTAAAGACCAAAGTTCAAGTTTTACAAGAAAGTAGAGAAATTAAGTAATTGCTGTGTCGATTATGAACGTAGAAGTCAGATTTAGCACGTATCGAGT AcacttttcaaatttttcattaaatttttaagcCCATCCAATGCATACAATGCCAGCTCATAACCATTCATTAAACTTCAAAGGCCAACCAATAACTACA + 85420_PtRNAdb chr-VI.trna14-His-GTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 14 25339101 25339172 His GTG 0 0 53.0 33.20 19.80 Inf His 75.9 Phanerogamae -NA- Dicot GTGGCTGTAGTTTAGTGGTaAGAATTCCACGTTGTGGCCGGGGAGaCCTGGGCTCGAATCCCAGCAGCCACA 72 >>>>>>>..>>>>........<<<<.>>.>>.......<<.<<....>>>>>.......<<<<<<<<<<<<. ATTAGGAATTATGTGAAATTGATTTGATTAGTGGCCATGATCACATGactaaaacttcaaaattatCGGAATATAGATTAAACAAACAAGAAGTGAACAA CTGCTCCGGTTTTTGCTGCATGTCAGTATTTCCTACTTCCTCTGTTTGTGCTAAGCATGGCCTGGAAGAACATTGTTCAACTTGTCCAAGTGATTTTTGT + 85421_PtRNAdb chr-VI.trna15-Thr-CGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 15 25905623 25905694 Thr CGT 0 0 80.2 53.70 26.50 Inf Thr 86.8 Phanerogamae -NA- Dicot GCTTCCATAGCATAGTGGTAGTGCGTTCGCTTCGTAAGCGAAAGGtCGCGAGTTCGATCCTCGCTGGGAGCT 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AAGATGGGCCTTCCTCCTCAAATTCCCAATAGGGGTCAACTTTGAAAAGTGACCCGATTAGAACAAAAGCATAAGAGAAATTGGGAACTGCAGGTCGCCG tttcaataaattttttttttttccaacaaatAAAGAGATTCCCCACTTACTGTATCTCCTAATGCTCAaatcttcttttaaaatttctctCCTCTTAACT + 85422_PtRNAdb chr-VI.trna16-Ile-AAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 16 26074296 26074369 Ile AAT 0 0 82.1 60.10 22.00 Inf Ile 104.1 Phanerogamae -NA- Dicot GGCCTGTTAGCTCAGTTGGTtAGAGCGTCGTGCTAATAACGCGAAGGtCGCAGGTTCGAGACCTGCATGGGCCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TAGTTGCTCACTCATACCCCAATTCCATGGTCCATAGCACcatctttccttttttataaCCCATGTCACCTAGTGTCCTGTTTGCTTGATGGAGCAAACA AGTGTCTTTGCTATAGAATAGTACGCGGCAGGTACTTCATTTGGAATTAGTTTTTGGCTCGCATTGAATAGCAAGCAGCAGGTACTTCATTTTGAATAGA + 85423_PtRNAdb chr-VI.trna17-Thr-AGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 17 25897657 25897583 Thr AGT 0 0 59.5 40.10 19.40 Inf Thr 75.4 Phanerogamae -NA- Dicot GCTGTCATAGCTCAGTTGGTtAGAGCACCCGTTTAGTAAGCGGGAGGtCTTtGAGTTCAACTCTCAATGAAAGCA 75 >>>.>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>.>>>.......<<<<<<<<.<<<. GTTCCGGTCAGTGTCTTCATTTATCGTTTCATTAATCAACTAAATACTAGCTTTACTCTCTTTTGCATGGAAGGATAGCCCTCTGACTTTGGGCCGTCAA TTGTCATATTTAATAGCTAAaatctttattaaaaaatttttattacatgCTCATGTTATTAAATCAcatcaaatattatataaatagaaaatatcaaatg - 85424_PtRNAdb chr-VI.trna18-Gly-TCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 18 25825041 25824970 Gly TCC 0 0 73.9 46.20 27.70 Inf Gly 85.6 Phanerogamae -NA- Dicot GCGTTTGTAGTCCAACGGTtAGGATAATTGCCTTCCAAGCAATAGaCCCGGGTTCGACTCCCGGCAAACGCA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. ATGAAAGAAGCCATAGCGGAGGCCTGCAACAGAGCTCACCATGGAAGAATGTTCTTCATTTTTACCCGTGAAATTTTTGGTGCCATTCTAGCCTCAGCCA TTAAATCTATATCATGTTTTCTTGCTCTCTGATATGCAGATATACCTAGCAGATCCTCATCCTTTAGCTTGCCTCTTTAGGAGGTTTGATATCAGGGATG - 85425_PtRNAdb chr-VI.trna19-Trp-CCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 19 25179156 25179085 Trp CCA 0 0 75.8 51.20 24.60 Inf Trp 105.6 Phanerogamae -NA- Dicot GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGtTGCGTGTTCGATTCACGTCGGGTTCA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ATAAAATCCAGTATCGagtagataaaaaaaagttgtgGGCCACTAGATGGCCCATTaagtttattttcaattatgtATTTTTAGATGGAAGCCTCATATC AATCCCCGGTTCGATTCGGATCCCCGCTTTTTTTTTACCTGCCCGCCACGGCAGCACTCCGCTCACTGATCTCCAACTAGAAAAACCCCAAAACCCTACA - 85426_PtRNAdb chr-VI.trna1-Tyr-GTA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 1 1342232 1342318 Tyr GTA 1342269 1342282 69.9 38.50 31.40 Inf Tyr 108.3 Phanerogamae -NA- Dicot CCGACCTTAGCTCAGTTGGCAGAGCGGAGGACTGTAGATCCTTAGGtCGCTGGTTCGAATCCGGCAGGTCGGA 73 >>>>>>>..>>>>........<<<<.>>>>>.....................<<<<<.....>>>>>.......<<<<<<<<<<<<. TCCGGTTCTTTTAGAATGTTTTCTTTtactaaaataacaatttacaaatattaataaatattaatatcaGTAATAGgactgaaattaaattttgatgtaA AgcctttttttcacttctttcaTTCATCACGCTCATTAATCAATTTCTACATGTAACAGCCTGGAGAAATAACATTaacattattaattaactGCTGCAG + 85427_PtRNAdb chr-VI.trna20-Asp-GTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 20 24382899 24382828 Asp GTC 0 0 69.8 46.80 23.00 Inf Asp 95.8 Phanerogamae -NA- Dicot GTCGTTGTAGTATAGTGGTgAGTATTCCCGCCTGTCACGCGGGTGaCCCGGGTTCGATCCCCGGCAACGGCG 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. AGAGACGAGAGAGATTAATGTCTCgtaaattatgaaattggGACCAACTTTATATAGAAGTATTGCTTACAATTAAAAAGAGCTGACCATCAGTCAATAG TCATCCTTTTCAATTTTGGCCTCTATTTTTTCATTCAAATCAAACCGTTGAATCCCGTAACTGAGTACCTCGTTGATCAACGCAGCTCTTTTTTTGTact - 85428_PtRNAdb chr-VI.trna21-Val-TAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 21 23926709 23926637 Val TAC 0 0 78.2 43.80 34.40 Inf Val 106.2 Phanerogamae -NA- Dicot GTTGCTGTGGTGTAGTGGTtATCACGTTAGTCTTACACACTAAAGGtCCCCAGTTCGATCCTGGGCAGCAACA 73 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TACATCTTTCCACACTAGCAAACAATGGCCAGAGATTTCATTTTGATTGCATCTTTCTTCATACTTGTTTTAAAATGTGATCCAATTCAGTGCATCAAGG GTTCTGTTATACTTATTTTATGCCAATGATGCTAtgctcatatttttttttattcaatatataaattatacaCCCATCAAATGCTATGGTTTTGCTCATT - 85429_PtRNAdb chr-VI.trna22-Glu-CTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 22 23886112 23886040 Glu CTC 0 0 72.6 46.80 25.80 Inf Glu 96.5 Phanerogamae -NA- Dicot TCCGTTGTCGTCTAGTTGGTtAGGATACTCGGCTCTCACCCGAGAGaCCCGGGTTCAAGTCCCGGCAACGGAA 73 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TTATTATTGTAGTTTAGGTTTTAAAGAATTCATGCACTAATGATCACTCTTTAGGCTCGATAAATTCCAGTTGATCGGTATGAAGCATGGTTCCCAACGC CTCAGCTTTTTGACCATTCATGGAAAGACCGATCACCTAACAATCTTGAATCAGAATAAAATCTATGGAAAAACCATGGGCAGGAAAACAAACGTACAAT - 85430_PtRNAdb chr-VI.trna23-Val-TAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 23 23883390 23883318 Val TAC 0 0 77.8 43.10 34.70 Inf Val 106.5 Phanerogamae -NA- Dicot GTTGCTGTGGTGTAGTGGTtATCACGTCAGTCTTACACACTGAAGGtCCCCAGTTCGATCCTGGGCAGCAACA 73 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTCtatttactttttcttaaaacgCTTGACACGACATTAGGATTTGAGTGTGGAAATATATTTTCGTGAAAGGTATTAAAAATAGCTTTGCGTTCAACGA GTTGTCATTTTTTTACAAACCCTTCTTCACCACCACTGTTCACAATCTCAGTCGTGCCAGTTCTGGATCAATGGTTCCGGCAAGGCAGGAAGGTTGAGAA - 85431_PtRNAdb chr-VI.trna24-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 24 23748701 23748631 Gly GCC 0 0 66.5 44.80 21.70 Inf Gly 94.4 Phanerogamae -NA- Dicot GCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGaCCCGGGTTCGATTCCCGGCTGGTGCA 71 >>>>>>>..>>.>.......<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. AGCTATGAATGAAATGACTTTCCCAGTGCTTACCAGGATCATTCGCTTCTACAAGTAATTGCATCAGgtgtatttatattttgagCTCAGTGCCCATCTA AGCgaatcctttttatttttcaacttgtttacagaaaatattttagtcTGGGATGAGTGGATGCAGGGTTTGATCCACTATTACTTTTGTTATAATGGGA - 85432_PtRNAdb chr-VI.trna25-Tyr-GTA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 25 23747310 23747221 Tyr GTA 23747273 23747257 74.3 42.80 31.50 Inf Tyr 111.8 Phanerogamae -NA- Dicot CCGACCTTAGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGtCGCTGGTTCGAATCCGGCAGGTCGGA 73 >>>>>>>..>>>>........<<<<.>>>>>........................<<<<<.....>>>>>.......<<<<<<<<<<<<. ACTTTGGCTTTTACATGACATTATACCacattattatttaactttcaTTTATATTCTACCAACAGAAATGATTGAAAGCCTTTCGTTTCTCATCAACAAT TCATTTTTAATGGTGTCTTCCTGCATGgttaattacttaattttatAATGGCTAGGCCAGGGCCAGCTTGGTTCTGGAAATACAGTCCAAGTCTTTTCAA - 85433_PtRNAdb chr-VI.trna26-Ile-TAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 26 23300662 23300589 Ile TAT 0 0 82.6 64.10 18.50 Inf Ile 102.3 Phanerogamae -NA- Dicot GGTCCCGTAGCTCAGTTGGTtAGAGCGTTGGTCTTATGAGCCGAAGGtCGCGAGTTCGAGCCTCGCCGGGACCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. atttgacaaaaataacaaaaccCAATCTAACAAATTTTGCCAAAATCgaatttaagtatttttatttatagtgATATAagtctatttttaaaaataaagg tttaattattgttttatattcCCATCAAGGATTAAAAATCTGATCATAATCCCATCAACGATATTTAAACCACGTTTACTGGTTCAAAATCTGATCATAA - 85434_PtRNAdb chr-VI.trna27-Glu-CTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 27 22876985 22876913 Glu CTC 0 0 79.2 53.50 25.70 Inf Glu 94.2 Phanerogamae -NA- Dicot TCCGTTGTAGTCTAGTTGGTcAGGATATTCGGCTCTCACCCGAAAGaCCCGGGTTCAAGTCCCGGCAACGGAA 73 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TAACCGAAATTTTACTAGGCATTCATAGATTTGCTGTTTGTCCGGTGCACTTCCTTCAGTAGTagttgaaataaaattaaagaccGCAACGAAATAACAA attttttttttataactcTGCCTCATCATTTTCCCGTATTTGTTTTGGGCCCAAAAGTGAAGGACAAAGTAGTAAATTGGAGTAGAGATAAAACCCTAGC - 85435_PtRNAdb chr-VI.trna28-Ile-AAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 28 22769030 22768957 Ile AAT 0 0 81.8 58.30 23.50 Inf Ile 106.8 Phanerogamae -NA- Dicot GGCCTATTAGCTCAGTTGGTtAGAGCGTCGTGCTAATAACGCGAAGGtCGCAGGTTCGAGACCTGCATGGGCCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AAGTGGCCTGGAGGTGTTAATTtcttgatgaataatgataaGGGAGCTGCCTTATCAATTTTAGGTTTATTAGATCTCACAAGAGAATCGTATGGTAATT aaattaacaaattttttcGGATTCGAACTCCATCCGTTCATTTATGACAAAAGTTAAAACCAACTTCGTCTTCATTTTAGCTAAAACCAACCACTTAAAA - 85436_PtRNAdb chr-VI.trna29-Glu-TTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 29 22704932 22704861 Glu TTC 0 0 70.9 46.40 24.50 Inf Glu 97.7 Phanerogamae -NA- Dicot TCCGTTGTCGTCCAGTGGCtAGGATGTCTGGCTTTCACCCAGGAGaCCCGGGTTCGATCCCCGGCAACGGAA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. CTCGtaactaaaaatattgtatTTTTAATACAATATCATGTCTAAACATCCTTATCTTATATTAAACTGCAAAGAGATGAGTGACTACTTGGAAAGCAAA AGTTTTGCAGACTCTTTTATTATTGGATGCCTTCCCTCTGGGAAGCCCCAGATCAGAGCCCATGTAGCGAGTTATGTATTTTTGAACCCACCAACTCTAA - 85437_PtRNAdb chr-VI.trna2-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 2 2602044 2602114 Gly GCC 0 0 66.5 44.80 21.70 Inf Gly 94.4 Phanerogamae -NA- Dicot GCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGaCCCGGGTTCGATTCCCGGCTGGTGCA 71 >>>>>>>..>>.>.......<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. AAGTACTCCATGTTTTGTTGTTCAGGGTAAACCCAAAGTGAAGCAACAAACCagaatatcaaaatatttcaatattcTTCTGTTTCCCTCTCATTAACAA TTCATGGAGCCATGATGCCAGGTGCGCTCTGGTGATGGTAGGGTCCATCACAACCGTCTGATCTCCAGACGACAACAGCGCCTCTGAGCTctatatcttt + 85438_PtRNAdb chr-VI.trna30-Arg-ACG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 30 22119196 22119124 Arg ACG 0 0 72.0 49.70 22.30 Inf Arg 93.9 Phanerogamae -NA- Dicot GACTCCGTGGCCCAATGGAtAAGGCGCTGGTCTACGGAACCAGAGAtTCTGGGTTCGATCCCCAGCGGAGTCG 73 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TATAGATGTCATGACCAAAAAAGATGTAGATAAAGAGTAGATAAAAGAGTAGAAATCCTCTAGCCATGAAAGGAGTGAAAAATAATCATCATCAACAACT TTACTTGTTAGCCAAAATATAGGTCAAAATTGTTGgtccttttttaaaaatttaatagaaaaaaaaaagaaattaactcGACACCGTGCTAAGCATCCAC - 85439_PtRNAdb chr-VI.trna31-Lys-TTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 31 21440544 21440472 Lys TTT 0 0 89.6 66.00 23.60 Inf Lys 96.4 Phanerogamae -NA- Dicot GCCGTCTTAGCTCAGCCGGTAGAGCGCGTGGCTTTTAACCACGTGGtCGTGGGTTCGATTCCCACAGACGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ACTTTTTATCTTAGCatacaaataaaattcacaaatttATTAGACTAAAAAGGTCAAAGTATAAAggctaaaaaaaattgtctttGTTTGCCTTACAACA tttttttcctttttttttttgtttatttttttgaaatttaattaaaatttaataggtAGGATACTTTTCTTTGCGTCCAACTACAATCAAACAAAGAAGA - 85440_PtRNAdb chr-VI.trna32-Lys-TTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 32 21388085 21388013 Lys TTT 0 0 89.6 66.00 23.60 Inf Lys 96.4 Phanerogamae -NA- Dicot GCCGTCTTAGCTCAGCCGGTAGAGCGCGTGGCTTTTAACCACGTGGtCGTGGGTTCGATTCCCACAGACGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ACTTTTTATCTTAGCatacaaataaaattcacaaatttATTAGTCTAAAAAGGTCAAAGTATAAAGGCTAAAAAAATTGGCTTTATTTTGCCTTGCAACA TTATATaactcctttttctttatttgtttgaaatttatttaaaatttaatatgtaggataattttatttgcGTCCAAGTACAATCAAACAAATAAGAGAA - 85441_PtRNAdb chr-VI.trna33-Ser-AGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 33 21016758 21016677 Ser AGA 0 0 76.3 41.60 34.70 Inf Ser 112.1 Phanerogamae -NA- Dicot GTGGACGTGCCGGAGTGGTtATCGGGCATGACTAGAAATCATGTGGGCTCTGCCCGCGCAGGTTCGAATCCTGCCGTTCACG 82 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. TGGTTAACCACTCTACAATACTTTAGGATTACTTGAATGTGAAAATACAATTATAAATACTTGTACTGTTAATGAACATGGCTTCGAGTAAGAGCAAATG GCcttgtttttatatttatctcTTCAATGAAAAAAGGTCAAAAGGAAAGCGTGAGCTTGGACCAAAACCACCCAAGGTTGGCATGGTTTAATATCCATCT - 85442_PtRNAdb chr-VI.trna34-Ser-GCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 34 20112533 20112452 Ser GCT 0 0 77.0 41.10 35.90 Inf Ser 107.0 Phanerogamae -NA- Dicot GACGCTTTGGCCGAGTGGTtAAGGCGTGTGCCTGCTAAGTACATGGGGTTCCCCCGCGAGAGTTCGAATCTCTCAGGCGTCG 82 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. ACAATGACCCAAACCTCTGTTCTTTTTCCCGTCAGAATGcaagacaattaaaaaaaaatagtctttttatttaatgggTACATGAACACCGTTCAACAAC GTACTTTTTTCCGATTTCCGAAAGTAGAAAATGGAGATCAAGGCACTCTTACTTAACCCATTAAAGAAAAGCAGAATCCACGAACATAGATGTTACGGAC - 85443_PtRNAdb chr-VI.trna35-Lys-CTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 35 18077685 18077613 Lys CTT 0 0 86.8 66.60 20.20 Inf Lys 107.7 Phanerogamae -NA- Dicot GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGtCGTGGGTTCGAGCCCCACGGTGGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTTCAAGTCAATAGCAGAAGTGTTAGAACTAGAAATCCAGAATCGGTCATTTTGGAAGTAAACTTTAGGATGAATACCCAGCACCTCAACGTCATCCGCT TCTTTCGCTTTGTCTCTTTTGAGCCTTTAGACATTGCTGCCCTTTTGAGCCCAATCACCAATAGGGCTGGGCCTCTAGAGGCTATTTGGGCTTTTCATTT - 85444_PtRNAdb chr-VI.trna37-Ser-CGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 37 17793321 17793240 Ser CGA 0 0 73.5 44.80 28.70 Inf Ser 108.8 Phanerogamae -NA- Dicot GTCGATATGTCCGAGTGGTtAAGGAGACAGACTCGAAATCTGTTGGGctTGTcCTGCGCAGGTTCGAATCCTGCTGTCGACG 82 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>......<<..>>>>>.......<<<<<<<<<<<<. AGCTGTCAAGAATGGCCCGTTGTTTAGGCCCACCTTCTGAGCTCATTATTTTAAagaagaataatttttttttatatttcagcCAAAATAGAGTGCTTCC CTGTCTTTTGTATATCTTCCTTTTTTATATTCACTTGCGTCCCAACAAGGGTAAAATCGTCTTTCACCAATCAAAACGGCCTactaaaatggaaaaagat - 85445_PtRNAdb chr-VI.trna39-Trp-CCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 39 260826 260755 Trp CCA 0 0 75.8 51.20 24.60 Inf Trp 105.6 Phanerogamae -NA- Dicot GGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGtTGCGTGTTCGATTCACGTCGGGTTCA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CAGGAGAAACATGCATGAAAACAACGGCAATAAAATCCGCTTCAAGAAGAAGCTTTGATCTTAGATTCTAAAATTGTGACAAAAATCTTTAAGCAACCGT aaatttttttttgtaattatttcattttattaaaataaaagttgcATAAAAGGTAACCTTAACTTAAATACGTTCCAGGATATAGCATGTGCTTTCAACT - 85446_PtRNAdb chr-VI.trna3-Ser-AGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 3 15971161 15971242 Ser AGA 0 0 76.3 41.60 34.70 Inf Ser 112.1 Phanerogamae -NA- Dicot GTGGACGTGCCGGAGTGGTtATCGGGCATGACTAGAAATCATGTGGGCTCTGCCCGCGCAGGTTCGAATCCTGCCGTTCACG 82 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. CTGTGATATTCAGTTTAAGAGGAAAAGGCTCAGAATTTCGATAACAGCccattttattatatgtttaTAACATAATAAAAGTGGCGTCTCACTCGCCATA ctttttctttttttgataagaaaagttttttcccttttttttttttttcggttTTTACAAAGATATGTCTAATCCTAgcacttttgtttttgtttggatt + 85447_PtRNAdb chr-VI.trna4-Arg-TCG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 4 16639614 16639687 Arg TCG 0 0 82.3 61.00 21.30 Inf Arg 91.9 Phanerogamae -NA- Dicot GACCGCATAGCGCAGTGGAttAGCGCGTTTGACTTCGGATCAAAAGGtCGTGGGTTCGACTCCCACTGTGGTCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ataaataaataaatgaaaatatacaCGGAGGTCgttagttttattttcatcTATGTTTCAGTCATTGTCATGTTTATAATTAGTGCCAAACATCTCATCT ATGGCAAATTCATTCATTGCTTTACTTCCGTTTTGTTCAACAATTTATCAAATCTTTTTTCTCCAACACTGATTAGATTGATTCAGGATCTAAGATAACT + 85448_PtRNAdb chr-VI.trna7-Ile-AAT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 7 18427795 18427868 Ile AAT 0 0 81.8 58.30 23.50 Inf Ile 106.8 Phanerogamae -NA- Dicot GGCCTATTAGCTCAGTTGGTtAGAGCGTCGTGCTAATAACGCGAAGGtCGCAGGTTCGAGACCTGCATGGGCCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AGCCTTTTCTCTTTAAGAGAATTTCTCAtattaaaacttcaaaaagatTGGTGGAATATATAAAATGCAAAGGCTTCAAACATATTACACCAAACATTGA GTTTTTGGATTTTGTCAGACTAAAGGGTCTTCGTCTCAGCTTACTGGATTTGTTGACatccttcttttctcttccctTGTGTTTTCCAGACAAATCTTTC + 85449_PtRNAdb chr-VI.trna8-Arg-ACG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 8 22130269 22130341 Arg ACG 0 0 71.7 49.10 22.60 Inf Arg 91.4 Phanerogamae -NA- Dicot GACTCCATGGCCCAATGGAtAAGGCGCTGGTCTACGGAACCAGAGAtTCTGGGTTCGATCCCCAGTGGAGTCG 73 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TCGTGGTTTTGGCGGGAAGCACTGAGGGGATGTCTCTGTTTTGGCGGGAATTGAGCCGATACATCGTCCAGCTGCCTATAGCATTGGAAGTCCTCCCAAC AGCTAGCTTGCTAGCTGGCTTTTTAGACCTAGACTACTTGTCATTTAAAAAATGCaataaaattaatagtgaCGCTTTTTCACAAAATTTGGAAATGGAT + 85450_PtRNAdb chr-VI.trna9-Gly-TCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-VI 9 22783369 22783440 Gly TCC 0 0 73.9 46.20 27.70 Inf Gly 85.6 Phanerogamae -NA- Dicot GCGTTTGTAGTCCAACGGTtAGGATAATTGCCTTCCAAGCAATAGaCCCGGGTTCGACTCCCGGCAAACGCA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. AGCACATATCCAACCACTTTCAATGCCACCCAGGGTGAAGAACAACGCTGCTTGAGCCTGTGCTCGTGAAGTTGGTAGGCGAATCCAAGCCAAGCAACAA TCTTTTTTCTGTTACGCTCTTGAATTTAATGTCACTCTTTCAGCTCCAAGCAGAGGCTATAGTAGGAAGGTAGAAATTGGCTGATTTGACGTGCTGATTG + 85451_PtRNAdb chr-V.trna11-Ser-GCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 11 28854211 28854291 Ser GCT 0 0 59.3 27.40 31.90 Inf Ser 88.3 Phanerogamae -NA- Dicot GTCGCTTTGGCCAGTGGTtAAGGCGTGTGCCTGCTAAGTACATGGGTTTATCCCGCGAGAGTTCGAATCTCTCAGGCGACG 81 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<..>>......<<..>>>>>.......<<<<<<<<<<<<. CCAGAAACGAACAAAGAAAAACACGTGCGGGGTGCTGTTGTAGAGTTGTTGTGAGACATTAATTAGTCTAAAAGTAATAGTACACTCAGCCAGCGGGGAC TTCTacctttttatcatttttaagttttctaaTCAAAGCTTAATGCTAACGCTATGGGCCAAAAACGGTTTAAGTACATCGCGCCACAAGCGTTTTTATC + 85452_PtRNAdb chr-V.trna12-Arg-CCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 12 29532025 29532097 Arg CCT 0 0 69.1 50.30 18.80 Inf Arg 81.2 Phanerogamae -NA- Dicot GCGCCTGTAGCTCAGTGGAtAGAGCGTCTGTTTCCTAAGCAGAAAGtCGTAGGTTCGACCCCTACCTGGCGCG 73 >>>>>.>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<. tgattttgatttttcctttagCGCCAAAGCCATTTCAggtttcttttatatatattctttataatacaagaaaattttaCGGTGCAAATTTTCGATGAAA TTGtagttttataatttaaaaaaaaaaaagaatttttcccaaaaaaagtcaaagacaatttttttataatttttttaaaaaagaatgtATTTTTTCAGaa + 85453_PtRNAdb chr-V.trna13-Leu-CAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 13 30335440 30335520 Leu CAA 0 0 38.5 31.40 7.10 Inf Gly 41.5 IPD:-19.50 Phanerogamae -NA- Dicot GCCTTGGTGGTGAAATGGTaGACGCGCGAGACTCAAAATCTCGTGCTAAAgAGCatggAGGTTTAAGTCCTGTTCAAGGCA 81 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.........>>....>>>.......<<<<<<<<<<<<. CAGATCAATAAAAATACTCCAACACTCCACCTTTGTTGTATATTCCACACATTGCACTAGATAGATATCACATGCATGGGATATGATTCACTTTCAAGAT TAATATTGAGAATGCTCATTGAATTGGAATAAGTTCAGCAGCAGATCATGAGATCTTggtaatcttttttatctaatgAATGGGTGGTCCACTTTGAAAT + 85454_PtRNAdb chr-V.trna14-Gly-TCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 14 32567054 32567125 Gly TCC 0 0 73.9 46.20 27.70 Inf Gly 85.6 Phanerogamae -NA- Dicot GCGTTTGTAGTCCAACGGTtAGGATAATTGCCTTCCAAGCAATAGaCCCGGGTTCGACTCCCGGCAAACGCA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. taaaattttatattggCTCATAAATAAAGGTTATGCACATGACCTTTTAGTTTCAGTATTGGTTTTTGAAAAGAGCTGAATGTCCTGTTTAACGTCTTAA TTCTTCTTGTATTTTATACTTTTCTGTTCCTCTGAAAGGTTTTGTAGTTGGGATTCATTCTCTTTCAGATGCTTCTGAAGATACCCTTTAGGTTTGTAGT + 85455_PtRNAdb chr-V.trna15-Gly-TCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 15 32575735 32575806 Gly TCC 0 0 73.9 46.20 27.70 Inf Gly 85.6 Phanerogamae -NA- Dicot GCGTTTGTAGTCCAACGGTtAGGATAATTGCCTTCCAAGCAATAGaCCCGGGTTCGACTCCCGGCAAACGCA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. tttttaattttaaagattacgtacttcttttattttattttttttccttttcttgttgttcGTTATAGAGCATACTTAAATGTCCCTTCTCGCAACGTGA TCCGTTATTacattttgcttttttttttaaaatgtccTGTTGCTGTGAGGGTCTGAAAACCCATGTTAAATTGgaattcattttttatgttttacctttt + 85456_PtRNAdb chr-V.trna17-Arg-CCG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 17 36112337 36112409 Arg CCG 0 0 69.2 51.20 18.00 Inf Arg 93.1 Phanerogamae -NA- Dicot GTTCGCGTGGCCTAATGGAtAAGGCGCTCGCCTCCGGAGCGGGAGAtTGTGGGTTCGAGTCCCACCGTGAACG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. attttaattagatTTTAGCAATAATAGACGATTGTCATTCTAATCCTAAATTAGTAATTCAGATCTCTGGATAAATGATGGACTGTGCCACACCATCTTT CctgatattttttatcaaaaccAATAAGAGCTTGCCACCTAAGCattttttaagcttttgaGTACCttcttcataattcatgaatcatttcttctttcgg + 85457_PtRNAdb chr-V.trna18-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 18 36973859 36973929 Gly GCC 0 0 57.4 35.60 21.80 Inf Gly 81.8 Phanerogamae -NA- Dicot GCACCAGAGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGaCCCGGGTTCGATTCCCGGCTGGTGCA 71 >>>>>>>..>>.>.......<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. GCAAATTGAGTCAGGACGCGACTTCTACTATGTAAAGAAAGGCTTTGAAATAGACGGCTCAATCGAGAAGTAATGTCACAAGACAATTGTGGGCATCACA tttttgtttttcccaGAGGATTTATCCTTTTTTAACTTTCACTTTTGTAGACATGCCAAGTGGCAAGCACCTATTGAACAATATATCCTTTTGACCTTCA + 85458_PtRNAdb chr-V.trna19-Thr-AGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 19 38712325 38712398 Thr AGT 0 0 75.0 46.80 28.20 Inf Thr 89.8 Phanerogamae -NA- Dicot GCTTTCGTAGCTCAGTTGGTtAGAGCACCCGTTTAGTAAGCGGGAGGtCTTGAGTTCGACTCTCAACGAAAGCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTCCCCTTGAATTTGTAATGGTAAAAGGCTACCATAAAAACTGAGCGCAAGAGGTATCTCTGTGGTTTCTCATAAAGATTTTTGGAAACCAAGGACAATT ATTTTCCATTTCCTTCTTACAACATCCTTTTACAGGTTTACCCCTATGGTTGGAATCCTCCTTCCTCCTCTTATTTCAGAATCTATCAACCCTTCTCACT + 85459_PtRNAdb chr-V.trna1-Ser-CGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 1 386315 386396 Ser CGA 0 0 73.5 44.80 28.70 Inf Ser 108.8 Phanerogamae -NA- Dicot GTCGATATGTCCGAGTGGTtAAGGAGACAGACTCGAAATCTGTTGGGctTGTcCTGCGCAGGTTCGAATCCTGCTGTCGACG 82 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>......<<..>>>>>.......<<<<<<<<<<<<. GAATGAGAGGGAAAACTGGAAGAAAGCTTCAGATTTGATTAAATTCGAAATAATagctttaaaacaaaaaatttatatgatttattaaCACAAGTTTAGC CTTCCGTTTTCAATCttggttttatttatttcagaCACAAAACTTTTTAATTACAATGAAGAATTCTTGTATTCATTTATTTCAGACACAAACTTTTTAA + 85460_PtRNAdb chr-V.trna20-Ala-AGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 20 38786670 38786598 Ala AGC 0 0 63.4 38.20 25.20 Inf Ala 98.3 Phanerogamae -NA- Dicot GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGtACGGGGATCGATACCCCGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TATAACCATCAATATCTTAACCAGCAAAGGTGAACGGGGCAGTTTCATTCGAAGACAAAGTTTATGAACAGAAGCTATTCATTAGCTTCCTCTAAAAAAT ATTTTTGCTATCTTAATAATTCAGAAGTGCCAAGCTCCTTCTTGTCATAGCCTTAATCTTCCTCACCTATTCTTTTATATGTAACTATAACAAAAGGTCA - 85461_PtRNAdb chr-V.trna21-Glu-TTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 21 38378133 38378062 Glu TTC 0 0 70.9 46.40 24.50 Inf Glu 97.7 Phanerogamae -NA- Dicot TCCGTTGTCGTCCAGTGGCtAGGATGTCTGGCTTTCACCCAGGAGaCCCGGGTTCGATCCCCGGCAACGGAA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. CAATAGGACTAACAGGCTCTAGAAAGAACAACACTTTTTGACAGCACTATGGTTCTTGATacactttttcaaaaaaaagtaCGGGGTGAAGCTCAATCAA TTACGAACTCTTTTTGCTCAAATTAGAACAATAAAGGCAGATTAATTAATACTTGAATAGTAGAAAAGCATAATCtaagaattttaatattgttCCTATA - 85462_PtRNAdb chr-V.trna22-Asp-GTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 22 36373798 36373727 Asp GTC 0 0 62.0 43.60 18.40 Inf Asp 86.4 Phanerogamae -NA- Dicot GTCGTTGTAGTATAGTGGTaAGTATTCCCGCCTGTCACGCGGGTGaCCCGAGTTCGATCCCCGGCAACGGCG 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>.>.......<.<<<<<<<<<<. ATGAGAAGAaggtcattttttatttacatctAAGCAAAATGGGATAAAACTCAGTTTTTTATAAGCAACCAGAATAAAATAGAGGTCATATCCAAACAAG tcataattttttttcttctttattgaGAGAAAAAACAGTATAGCATGAAATAGAGATTGTAAGGAACAGGATTGtcaaattcattaaaaattttaagata - 85463_PtRNAdb chr-V.trna23-Cys-GCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 23 32354278 32354207 Cys GCA 0 0 82.1 59.90 22.20 Inf Cys 106.6 Phanerogamae -NA- Dicot GGGTCCATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCACCGGTTCGAACCCGGTTGGGCCCT 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GCTAGCATTAAAGGTGTAAGGTGTATCATGTTAAACCTTAACGGTTGCAAGATTGGATTAAATATTACCAAATAGTATAATCCTTGGCAGTAGTCAAAGG tcatttatttttggtaaaaaaaaaagcatttcttatttcttaaaccCTATCTCATTTCAGCTTTGTTATAATTCAAATGAATGATTTTCTGGCCCAAAAG - 85464_PtRNAdb chr-V.trna24-Thr-AGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 24 31496198 31496125 Thr AGT 0 0 75.0 47.40 27.60 Inf Thr 89.8 Phanerogamae -NA- Dicot GCTCTCGTAGCTCAGTTGGTtAGAGCACCCGTTTAGTAAGCGGGAGGtCTTGAGTTCAACTCTCAACGAGAGCA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TATGGTCTATTCTGTAAGTGAACTCTCCATCTCttgaaaacaaacaaaacaaagtaTTCTCATTCGTTGTCAGATGGTAACTGAAGATGCGGATTGGCCA ATGGTTATTGTTTTCGCTTAATTCCTTTCTGTTCATATCTATAACATACCCAAAAAAGGCTTCCTCTTTTAACCACGTGGGGGAGTtaagaaaaaagtga - 85465_PtRNAdb chr-V.trna25-Asn-GTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 25 30793424 30793351 Asn GTT 0 0 81.1 58.40 22.70 Inf Asn 93.7 Phanerogamae -NA- Dicot GCTGGAGTAGCTCAGTTGGTtAGAGCGTGTGGCTGTTAACCACAAGGtCGAAGGTTCAAGCCCTTCTTCTAGCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. aaatcttttctttttaagccGTCAcggattttttttatcaatattaGTATTTTTGTAGGAAAATATAGTATTGttggaaataaaataatatacataaata taattaattttttttaatttcaattcaattaattttttgttaattgattaatcaaattttttgttaattgactaatttcacatttttccttgtcaattaa - 85466_PtRNAdb chr-V.trna26-Lys-CTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 26 30397620 30397548 Lys CTT 0 0 38.4 25.70 12.70 Inf Asn 48.8 IPD:-20.90 Phanerogamae -NA- Dicot GCTGGAGTAGCTCAGTTGGCtAGTGTGTGTGGCTCTTAACTACAAGtTGAAGGTTTAAGCCCTTCATCTAGTG 73 >>>>>>...>>.>.........<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<.<<<<<<. TTTTTACGTAAATCTCAAACATCAAATTGGAATTAGAATCACCTGCTTCGCATTTTCTCTTCCAACATAGGTAATACTTATTCAATTCCAAGAATACAAA TAATTACTTTATGTAcccaaaaaaaattccaagaaTCATACGAACAGCCAGAAATGGCAAAAATTTCCTACCAGCAGCAATTGCACCAACCTGAACAAAT - 85467_PtRNAdb chr-V.trna28-Lys-TTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 28 28254411 28254339 Lys TTT 0 0 88.7 64.40 24.30 Inf Lys 93.7 Phanerogamae -NA- Dicot GCCGTCTTAGCTCAGCCGGTAGAGCGCATGGCTTTTAACCATGTGGtCGTGGGTTCGATTCCCACAGACGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ttctcttttttcaattaaaaaaacaaaacttgtTGGCTAATTCATTAGgttgaaatattaaaatgtaggtacataatattaaaatacaaaaaaatcaCAA TTATATATTTAggtatttttttcaaatgatcAGCGACGTAATATATTTAGGTTTTTTTTCATATGATTAGCGAcccataaaaatattttagttattttag - 85468_PtRNAdb chr-V.trna29-Leu-TAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 29 28192283 28192201 Leu TAA 0 0 71.0 33.00 38.00 Inf Leu 93.8 Phanerogamae -NA- Dicot GCAGGTTTGCCCGAGAGGTtAAGGGGGAAGACTTAAGATCTTCTGTACATAAGTACGCGTGGGTTCGAACCCCACAGCCTGCA 83 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. tAAAAAGATACGAGAGATTGTAAAACTAAAATAGTGACTGGTATAATTAATTGGATTCTTCCTATggtaaatttataataaagcGATTCAATGATCAACG ATGGCTTTTGCATCAATTAAGCTACGACTTGTTTGCCAAATCgagatgattttttttttttaaagtacaTATGATCTTGAGTACGTAAATAGAATAATaa - 85469_PtRNAdb chr-V.trna2-Lys-CTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 2 1100498 1100570 Lys CTT 0 0 86.8 66.60 20.20 Inf Lys 107.7 Phanerogamae -NA- Dicot GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGtCGTGGGTTCGAGCCCCACGGTGGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ATAAAAGCTGACATTTCCTCCTACTTCTGGTCTTACAGCTACCCTTCTATCCTATGATACCGACTTCGAGTATTTTGTTCAAATTTCCGAATTAACAGCC TCATCATCTTTTTTGCCAAGCAAATACCATATTCACAACCATGATAAAACTGCATTACTGGGAATCTAGTAACAGCAAAGAAATACCTGGAATGATGCAT + 85470_PtRNAdb chr-V.trna30-Ser-TGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 30 10012070 10011990 Ser TGA 0 0 78.5 43.80 34.70 Inf Ser 114.4 Phanerogamae -NA- Dicot GTCGGTATGTCCGAGTGGTtAAGGAGACAGACTTGAAATCTGTTGGGTTCACCCGCGCAGGTTCAAATCCTGCTGCCGACG 81 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>.....<<..>>>>>.......<<<<<<<<<<<<. aaaaatagaaattgtaCCCAAAAGAGGAGAGGAGTGGGGAATTGATCTAGCTGAAAgaaattttgttatataaCACAACTAAATTGGTCGAACCAACCAA TTATCAAAcgttttccctttttctaaTTTCGTTTAAGATGGCAATTAGTTGTGCGTTACTGGTAAATgaacaatttatttttttttggtaacttcaaatt - 85471_PtRNAdb chr-V.trna31-Leu-TAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 31 6382715 6382636 Leu TAG 0 0 69.2 49.00 20.20 Inf Leu 109.5 Phanerogamae -NA- Dicot GACAGTTTGGCCGAGTGGTctAAGGCGCCAGATTTAGGCTCTGGTccggaaGGgCGTGGGTTCAAATCCCACAGCTGTCA 80 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. AAGCGATTGCATCCATCAGTTAACGGGCAGTTAAGTTATTTTCAAGTGGTAGAGCTGTAAACAAGGAATATTTAACTATCTGTTGAACAACTGCCCGGAA tatttttaattttttccattCTGCTTAAACGCGACGTCGTTTAACTTTTTGATTATTCCCAGCTAATACGACATCGTTGAACTTTTGTTTTTCCCCTTCT - 85472_PtRNAdb chr-V.trna32-Pro-CGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 32 6124294 6124223 Pro CGG 0 0 69.3 37.10 32.20 Inf Pro 106.8 Phanerogamae -NA- Dicot GGGTGCTTGGTCTAGTGGTATGATTCTCGCTTCGGGTGCGAGAGGtCGCGAGTTCGATTCTCGCAGCACCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. aaaCACGTCATTTGTTAGATatctataatttaattatttaataaaacaaattaaggaATATACTGATAATAGATATTATTTTGAGCTTAATCATGTTGAA AAATGTTAGTTAAGTTAACCAAATTTTTAATCCTTTGGGCCTTGATGAACCCGGCTCTTTTCAGAAACCAGGCCTCTAAAATTTCACTAGGGTTTTAACT - 85473_PtRNAdb chr-V.trna34-Leu-TAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 34 4514580 4514498 Leu TAA 0 0 69.7 31.30 38.40 Inf Leu 92.9 Phanerogamae -NA- Dicot GCAGGTTTGCCCGAGAGGTtAAGGGGGAAGACTTAAGATCTTCTGCACATAAGTGCGCGTGGGTTCGAACCCCACAGCCTGCA 83 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. TAAACCAATGAagtaaaaaatagaaagatcAGAAAGACGTTTCACGGTCGATGGAATAACATAGTTTTATTGTAACTCTATATAAACCTGGCAATCAAAC TCTCTTCGCTTTTCCTTCAACTCTTTCTTTGTACCTCTTTAAAGCCTGGATTTAAGTAACCATTGTTGATTGTCCTTTTCAACTTAAGTTTGTTTTGGAA - 85474_PtRNAdb chr-V.trna35-Arg-TCT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 35 4294413 4294341 Arg TCT 0 0 69.9 49.40 20.50 Inf Arg 99.6 Phanerogamae -NA- Dicot GCGCCTGTGGCCTAATGGAtAAGGCGTCTGACTTCTAATCAGACGAtTGTGGGTTCGAGTCCCACCAGGCGTG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTTGGAGCTTTAATCTGTCACTGGCGGAGCTGGCAAGCGGGTCATGCGGGGACTGATTAAATGTTAtattacttttaataaaaatacttttccCGTTGAA CCCTATCAATTTAATTTTCCAGGATTTATATCAACATACATgttatattttctatttctcgACAAGTTTTGGTTCCTGCGAGGTGTGAAATGGAGTTTTT - 85475_PtRNAdb chr-V.trna37-Arg-TCG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 37 2217328 2217255 Arg TCG 0 0 82.3 61.00 21.30 Inf Arg 91.9 Phanerogamae -NA- Dicot GACCGCATAGCGCAGTGGAttAGCGCGTTTGACTTCGGATCAAAAGGtCGTGGGTTCGACTCCCACTGTGGTCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTAAACACAGCTCGCCATTCTATAACCCTGAGATTTCTGACTCCgaagaaaaaaaggattaGGTTGAGTATAGTAAACCATAGAGGAGAGGCATTCATCC agaataaaataaaatcttaactTTTTGGTATTTTAGGTTTGACATTGGAAGCTGATTAGTAGCCAAAAATTAGAGACTTGTTAACTCAATGAGAAATGGC - 85476_PtRNAdb chr-V.trna38-Cys-GCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 38 2004020 2003949 Cys GCA 0 0 79.9 59.80 20.10 Inf Cys 108.3 Phanerogamae -NA- Dicot GGGTCTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCACCGGTTCGAACCCGGTTGGGCCCT 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GAATTCTCAGTGCAACAGTCTAAACGTTCGATAATCAAGTTGTTTGactttttctcaaatttaaaattgagaaagactaaatcaattttaaaaaaccaAG TAAATTTCcaatttgcttaaaattttttgataagCATCATTTAACAATTAACATCAGTAGCCATCCGGTCAGGCTCCAATCATGCTGCCCGCTTAAGAAA - 85477_PtRNAdb chr-V.trna39-His-GTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 39 1939940 1939869 His GTG 0 0 63.0 33.70 29.30 Inf His 86.8 Phanerogamae -NA- Dicot GTGGCTGTAGTTTAGTGGTaAGAATTCCACGTTGTGGCCGTGGAGaCCTGGGCTCGAATCCCAGCAGCCACA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. GaacttttttttgtattttcttgaataattcagataattttttaaagaaattgcTAAATATAGGTCTGTCAGAATTTCTATACCACTTTTTTATCCAATT gtaacttttcttttttcgggaattttattttagtgaTTAAAAAAATCTGCAGAGCAACATACAAAACGGCCTCGTTTTAGAGGCCGCTCTCGAACACTCC - 85478_PtRNAdb chr-V.trna3-Val-CAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 3 1393605 1393678 Val CAC 0 0 82.4 54.40 28.00 Inf Val 103.7 Phanerogamae -NA- Dicot GTCTGGGTGGTGTAGTTGGTtATCACGCTAGTCTCACACACTAGAGGtCCCCGGTTCGAACCCGGGCTCAGACA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. tgaaaaaaagcTTGGATTAATACATCTTGCGTACATAAACAAATACAATCATCATTTCTATTTTCTGGTTGGTACACAACAAAGTTAATCGAACAAGAAT TTAGaataatttttactatttttcaaTCTGCATTATTCTCCTTCTTCGAACCTTCCAAATTCCTTCAAGCTTCAGCCATTATCATTTTTAAGGCAATCTT + 85479_PtRNAdb chr-V.trna40-Lys-TTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 40 1759997 1759925 Lys TTT 0 0 89.6 66.00 23.60 Inf Lys 96.4 Phanerogamae -NA- Dicot GCCGTCTTAGCTCAGCCGGTAGAGCGCGTGGCTTTTAACCACGTGGtCGTGGGTTCGATTCCCACAGACGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ATCCTTTACCTTATTTGCTGTGTCTGGCAGAATTTCAGTATTGACCCAAAAATACGAAGAAGAGCTAAAGCAAAATATTAGACAACAAAATTTCAACCAG TTCTTTTATAGCTTTTTGACAACATTTGTACTCCACTTTTCATCTCAAAGCCCGGCAAACCCAATTCAGGCCCATTTCTACCCACAATATTCCCTCAAAA - 85480_PtRNAdb chr-V.trna41-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 41 1314606 1314536 Gly GCC 0 0 66.5 44.80 21.70 Inf Gly 94.4 Phanerogamae -NA- Dicot GCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGaCCCGGGTTCGATTCCCGGCTGGTGCA 71 >>>>>>>..>>.>.......<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. CTGAAGCACGGTACAAGATTGGATCTGTGGTTTGGGGCGAGCAGGGATTATCCATGAATACCATGAATATTTAGAGACTAGAGGTGTTTGATATCAATGA AAGAAGTTTTTTTCCATTTGATTCTCATCTTACTCTTCTGATTGAACTAGGGGATGCCTGTGTGATTAAATTATATCAAAGAAACAGCCGAAAAGGAGAT - 85481_PtRNAdb chr-V.trna42-Ser-AGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 42 1307978 1307897 Ser AGA 0 0 77.1 42.80 34.30 Inf Ser 110.5 Phanerogamae -NA- Dicot GTGGGCGTGCCGGAGTGGTtATCGGGCATGACTAGAAATCATGTGGGCTCTGCCCGCGCAGGTTCGAATCCTGCCGCTCACG 82 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. TATTAGAATTGCAGAGAAAGTAGGAAAGCAACAAGAAATCAAAGTCTAGCAATCAAATTTATTCCAGTGATCCCAAACATGGCCAATTTTATGGCATGCG TTTTACTCAATTTTCATTCATCCAAAGCCTGCAGatcatcttcttttttttttaatcgtTTTTTACAGGGAGCTTATCCTGAACTTTGTTTCATGGAAGT - 85482_PtRNAdb chr-V.trna43-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 43 1082527 1082457 Gly GCC 0 0 66.5 44.80 21.70 Inf Gly 94.4 Phanerogamae -NA- Dicot GCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGaCCCGGGTTCGATTCCCGGCTGGTGCA 71 >>>>>>>..>>.>.......<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. ttttaaaagaattaatattCGAGTTTGATTCTTAATCAGCTACATTATCCGCCGTCATTTCTATGAACAAGTAAAAAGGTTGGAAGTTCTGAATCACAAA CCACCGAGCTGTGATGATTGCTGTGCCCCATGTGATAGTAGGGTCTATCACTAACGTCTGTTTCTTGGGACGAATTTGGTCACATTTGAGCTCgtttttt - 85483_PtRNAdb chr-V.trna44-Glu-CTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 44 1073239 1073167 Glu CTC 0 0 78.9 53.10 25.80 Inf Glu 99.2 Phanerogamae -NA- Dicot TCCGTTGTAGTCTAGTTGGTtAGGATACTCGGCTCTCACCCGAGAGaCCCGGGTTCAAGTCCCGGCAACGGAA 73 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. CACTGAAACTGAACTGAACATTCGCAGCAATGGATAAAGTGCGGGCGGTCAGTTCTCAATATACAGACATATATGTAAGGGAAAACCACAAAAGTAAGCA attttttttccatttttggtCGTTCCAGGTCATCCATGATCAATGAACAAGACAACCTCTAGTCAAACACTAATAGGATTTGTTTAATAAGCTCAACGAA - 85484_PtRNAdb chr-V.trna45-Ala-AGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 45 643668 643596 Ala AGC 0 0 63.4 38.20 25.20 Inf Ala 98.3 Phanerogamae -NA- Dicot GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGtACGGGGATCGATACCCCGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTTTGGCGACTTTCTTATTTTAGACGATGACTGTTTGTCTCAGGCTAAACTTTTTAGAAATTTACCACACTGGATTTGTAACTTTGCAAGTTCTTCAAGC TTAAGAATTTTTTCCTTGCTCATTCATTCTTCTAATCTTCTCTGCCTCTGTTCATTGCAGTATTGAAGATGAAGGAAACTTAAGCTAACATTCACCATAA - 85485_PtRNAdb chr-V.trna46-Ala-AGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 46 643005 642933 Ala AGC 0 0 63.4 38.20 25.20 Inf Ala 98.3 Phanerogamae -NA- Dicot GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGtACGGGGATCGATACCCCGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ATGTTCTGTTCCTtaaaagagggaaaaaagcGGCCGTGATAGTTAGAATGTTCTGACATTGCTGAGATTCTGAAGTTAAGCTCTACTCTGACTGTTAACA CTTTTTTCGGAGTTTCAACTTTTTCTTGTACCGCAAGCACGGACAGGAAAGAACAAGTGGGAGTTCTAAAATGATTTTGAGTTCTCAAGTTTTCTTGTCT - 85486_PtRNAdb chr-V.trna47-Gly-GCC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 47 355580 355510 Gly GCC 0 0 66.5 44.80 21.70 Inf Gly 94.4 Phanerogamae -NA- Dicot GCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGaCCCGGGTTCGATTCCCGGCTGGTGCA 71 >>>>>>>..>>.>.......<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. ttgaatcaattattaataataacttaaacttaaatcaaCCTGTCGACAGTGTTCTGCGATGTCGGACCGCTTGCAGAAATATAGAAAGTCACTCCACAAA GAATTGTTTTTGCCGAGTTCTGTTTGGCCCTCTGCCCCATGAACTCTGCTAGCCCTTAACTCCACTCCAGAACATAAACGAATGCAAATGTTTTGCCACA - 85487_PtRNAdb chr-V.trna4-Ser-TGA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 4 1860590 1860671 Ser TGA 0 0 80.4 45.20 35.20 Inf Ser 119.4 Phanerogamae -NA- Dicot GTCGGTATGTCCGAGTGGTtAAGGAGACAGACTTGAAATCTGTTGGGTTTCACCCGCGCAGGTTCGAATCCTGCTGCCGACG 82 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. ATAAGACATGGAGATTGGTTGCTAAATTGCATAATTGTGTAATTAAACCACATAAACATTAGAGTATTGAATACTAAATTTCTGAAAGGCCTCTGCCACA AATTGTATTTTATTTCTGCATGCCAAGGCCCAAGTTGCAAATCTCTCTACTTTTCAACTCAAACCCAAGCCTAAACATTTACTAAACCCATCCGTTTTGT + 85488_PtRNAdb chr-V.trna5-Val-AAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 5 1971487 1971560 Val AAC 0 0 72.6 48.30 24.30 Inf Val 95.5 Phanerogamae -NA- Dicot GGTGTCGTGGTGTAGTTGGTtATCACGTCAGTCTAACACACTGAAGGtCTCCGGTTCGAGCCCGGGCGACGCCA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GAgggaagaagagagagaaaataaggTCGAAATGCCTGAGCTTATAGTGTCTATACTAATACCTGTTATCAATATTGTCAAGGACCACCCCTTAAAAAAT TTTGTTTGGTTTTTGGGTTTAATGTTCCAGTGGGCTACTTTAGTGTCTCAAACAAGTGGGCTATTGTTGGGCTCGTGGACTTGGCTTTGGCCTCATCAGT + 85489_PtRNAdb chr-V.trna6-Pro-AGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 6 2681498 2681569 Pro AGG 0 0 68.1 35.70 32.40 Inf Pro 110.6 Phanerogamae -NA- Dicot GGGCACTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGAGTTCAATTCTCGGAGTGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AATTCGTACCACATTTGGAATCCAATGGCTGATTTCACAGCAACGAAAGAAAACACCAACAGTTCCGGATTGGGCTCAACGACTAAAACACGGTCAACGA TACTTTGCTTTATTGGGTCTGAATCTACCCCTTTGGGCTTTTTTTTGGGGCCTATTTAAGGCTTTGGCTAACTTCTAGATCTTTGAGCTTAGCCCGAAAT + 85490_PtRNAdb chr-V.trna7-Leu-AAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 7 4691405 4691485 Leu AAG 0 0 36.2 26.80 9.40 Inf Leu 55.5 Phanerogamae -NA- Dicot GTTGAGATGGTCGAGTTGGTctAAGGAGCTAGATTAAGGTTTTCGTttgaaaGAaCATGGGTTCAAATTCCATTCTCAACA 81 >>>>>>>...>>............<<..>.>>>.......<<<.<...........>>>>>.......<<<<<<<<<<<<. ataactaaaagTTAGGAGGTGAGAATATTTTACCTAAAAAAGTAATGTTGAGATGGATAAGtaaccaaaacaaaagaatacaattaaaaaaaaaagtaat attttatttttttgcaaaatgaaagaaacaaaaaataaaagtatggtcaaaatacccaCCAAGTTCATGTACTCAtgcattttgtttaatttagtcctta + 85491_PtRNAdb chr-V.trna8-Leu-AAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 8 4693964 4694044 Leu AAG 0 0 43.3 37.40 5.90 Inf Leu 58.6 Phanerogamae -NA- Dicot GTTGAGATGGCCAAGTTGGTctAAGGCGCCAGATTAAGGTTTTGGTacGAAAAGgCGTCAGTTCAAATCTCACCCTCAACA 81 >>>>>>...>>>............<<<.>>>>>.......<<<<<...........>>.>>.......<<.<<.<<<<<<. attatttaaaaaattcaaataagtcttttttttcttgtattttaaCAATAATCTACACCTTTTATGAAGAAATAtgcaaaaatgacaaaaattgaAGAAG attaatatttaaaaaaactcttaaattatttaaaaaattaaaataaattcttgtatttttattttatacaaattagcccttatcatattttaaaccaaat + 85492_PtRNAdb chr-V.trna9-Leu-AAG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-V 9 9410891 9410971 Leu AAG 0 0 74.0 52.20 21.80 Inf Leu 110.4 Phanerogamae -NA- Dicot GTTGAGATGGCCGAGTTGGTctAAGGCGCCAGATTAAGGTTCTGGTccgaaaGGgCGTGGGTTCAAATCCCACTCTCAACA 81 >>>>>>>..>>>............<<<.>>>>>.......<<<<<...........>>>>>.......<<<<<<<<<<<<. aaatatatgttAAAATAGTCAAAAATCAAGTATTTTAATCATTCGAATAATCACCTTTTATTTCTATAAAAGGTTTTACGTCGCCACGTAAGAATTGAAT ttctaattttaattttcccCGTTTCCTTTGTTGGGTTTGGGCCAAccacatctttcttttttcctccgttttcttttttgggtttgAGCCTACCACCTCG + 85493_PtRNAdb chr-X.trna10-Pro-AGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 10 3678186 3678257 Pro AGG 0 0 67.4 34.70 32.70 Inf Pro 112.3 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGAGTTCAATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ACTAAAGAGGGGTTTTTGTCATTTCGAAGGGTTTCtggtttttacttttaaattcaatattCAAAATCCTTAATATTTGTTAAAAACCCACCATCAGCAA TTCTTTGCcgtttcttttcctttttctcatcaaacttggttttagattttttttttctaatttcttttgaaGCTTCTTATCCTTCTAGAGAAACTCggtt + 85494_PtRNAdb chr-X.trna11-Tyr-GTA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 11 4897060 4897151 Tyr GTA 4897097 4897114 63.8 43.10 20.70 Inf Tyr 83.6 Phanerogamae -NA- Dicot TTTACCTTGGCTCAGTTGGTAGAGCGGAGGACTGTAGATCCTTAGGtCGCTGGTTCGAATCCGGCAGGgcAGAG 74 >>>.>>>..>>>>........<<<<.>>>>>.........................<<<<<.....>>>>>.......<<<<<<<<..<<<. TATGTAATGTaagtaaaaattaagataCTTTACTTTATATtcaatcattttcataaactAAGTTGTACAAGGTAAGGCctcaagtaaaaaataatcCTGT TTGGGatatctttttccttttttttttaaattttcctctATAAACGAcaataacataatattttttttaagaaattgtagatattatattttggctgtta + 85495_PtRNAdb chr-X.trna12-Lys-TTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 12 5070956 5071028 Lys TTT 0 0 88.7 64.40 24.30 Inf Lys 93.7 Phanerogamae -NA- Dicot GCCGTCTTAGCTCAGCCGGTAGAGCGCATGGCTTTTAACCATGTGGtCGTGGGTTCGATTCCCACAGACGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CCAATAGATTAATTACCCAAATCCTTACAAAATCGATGAGTAGgagaattaaaaaagaaaaaaaataataattgttttaaaataaaagaacacTAGCGAA GCTGttgaatattttcaaatttttaaattacattttcttttctctttcctttggttttccTAAAGAGCAATGATCAGAGAGAAACATTTTGGTTCTTTAC + 85496_PtRNAdb chr-X.trna14-Asn-GTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 14 18743542 18743615 Asn GTT 0 0 84.5 59.40 25.10 Inf Asn 95.9 Phanerogamae -NA- Dicot GCTGGAATAGCTCAGTTGGTtAGAGCGTGTGGCTGTTAACCACAAGGtCGGAGGTTCAAGCCCTCCTTCTAGCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. ATTGTATTCAGTGAAAGATAAAAGGAATGatgatatttatctattttaaccgaaataaaaactaattgatttatctttaaaatgcCTTAACCGCTAGATC TCTTAAAAATTAagctttttttaatataattaagttttgcccttttttctaaaaattaagtttttttaatataattaagcttttcctttttttctaaaat + 85497_PtRNAdb chr-X.trna15-Thr-TGT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 15 21407527 21407456 Thr TGT 0 0 79.3 49.30 30.00 Inf Thr 92.3 Phanerogamae -NA- Dicot GCCCCTATAGCTCAGTGGTAGAGCGTCAGTCTTGTAAACTGAAGGtCTGTAGTTCGATCCTGCATGGGGGCA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TGACAATgcgataataaaataaacaacacaCAGGATCCCAGTGGGGAAGCTCATGTTAAAAATgtagaaaacaaaaggaattTGGATGACCAATGTCAGA AACCTTTCTTGATTTCCTTCTGCTTTTTGCCTAGCAGATACAAGTGTAGAAGAAACAATAGAGTAAGCCAAAGAACAATGACTCAGGTTTGGCTTACTGG - 85498_PtRNAdb chr-X.trna16-Arg-ACG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 16 20296220 20296148 Arg ACG 0 0 71.7 49.10 22.60 Inf Arg 91.4 Phanerogamae -NA- Dicot GACTCCATGGCCCAATGGAtAAGGCGCTGGTCTACGGAACCAGAGAtTCTGGGTTCGATCCCCAGTGGAGTCG 73 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. atagtaTAATATAGGGATTTATTGTAtactttaattaaaacaaacaaggacttaaattgttaaaaaatagCAGTATATAATCTTGGCATTAAGCAATAAG CACTTGGATTAATTTTTTCGAATTTTCCTTTGTGGGCCAACGAGGCCGTAACGTAATGGAGCCCAACTTTCTAACGTCCAGCCCCTTTCGTAGGGCCAAA - 85499_PtRNAdb chr-X.trna17-Leu-TAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 17 7471107 7471025 Leu TAA 0 0 42.6 18.90 23.70 Inf Leu 55.6 Phanerogamae -NA- Dicot GCTGGTTTGCCTGAGAGGTtAAGGGGAGAGACTTAATATCTCCTACACATAAGTGCGCATGGGTTTGAACCCCATAGCCAGCA 83 >>>>>>>..>>>..........<<<..>>>>.......<<<<...>>>....<<<...>>>>>.......<<<<<<<<<<<<. CGGTGATAGATTGAATTGATGATCAAATACATGTTTCGGCAATAACGGCCTTTGAAttaagtcaaagaaaataaaaaaaaagcttaaaactTGCAATAAA CTTTATAACTTAATAGCAAAGAGGCCATGCATTACATTTGCTCCAAAATTTAAGTTTgtaaaatagataaatattttattaatttttaaaataattctgT - 85500_PtRNAdb chr-X.trna18-His-GTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 18 2269563 2269492 His GTG 0 0 63.0 33.70 29.30 Inf His 86.8 Phanerogamae -NA- Dicot GTGGCTGTAGTTTAGTGGTaAGAATTCCACGTTGTGGCCGTGGAGaCCTGGGCTCGAATCCCAGCAGCCACA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. GATGgcataattttaatatattatagcAAATTTAGCtcaattcatattttaaattactCAATGTTTAAATAGGGACATTTTGGcacattaaaacaaaaaa GGAAACCCTTTTTTGGccagatttttcaacttttcttttttatttttattttactttccCGTCTGccaaaattttgaacttttctttttttatttttatt - 85501_PtRNAdb chr-X.trna19-Arg-CCG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 19 2268923 2268851 Arg CCG 0 0 80.4 58.30 22.10 Inf Arg 84.6 Phanerogamae -NA- Dicot GATCGCATAGCGGAGTGGAtATCGCGTTAGACTCCGGATCTAAAGGtCGTGGGTTCGAATCCCACTGCGATCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GTTTTGAAAGCGGCCGCGTTGTTTAGTTTCTCGTTCTCGAATAGGGAGTTCTAGCGATTTCAGTAAATAAGTCGAAAATCGAATGATGTTAGTAAAATGC CCATCCGTTCAATCGATTTTGCATTTTGAGCCTAGTGAAATTTTCAGTAATTTACGATTTTTTAGAgcattttttgtaattttaaacTTGAATTGTAAGG - 85502_PtRNAdb chr-X.trna1-Lys-CTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 1 563816 563888 Lys CTT 0 0 86.8 66.60 20.20 Inf Lys 107.7 Phanerogamae -NA- Dicot GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGtCGTGGGTTCGAGCCCCACGGTGGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. gtAGATATGAATAGAATGATAAAGACTTTTTCCAATGcattgaaacttttttttatcgtctcaaaaaaatttatgatattACGAATCCAAGAAAACCGTA TTTTTGAGCcaaaaaatagtttaatttaaaatacataaagcCCAAATGAGCCCAAACCGACTTTTAGTGTTGAAATTATCCTTACTTTTCCGGTGTCCAG + 85503_PtRNAdb chr-X.trna20-Lys-CTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 20 2078053 2077981 Lys CTT 0 0 86.8 66.60 20.20 Inf Lys 107.7 Phanerogamae -NA- Dicot GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGtCGTGGGTTCGAGCCCCACGGTGGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TCAAGATTTAATACTAGTGTTCACCTTCGATGAGGactcaatttttgttttctgtaGTAATACAATGAAATGACGTTTAGATCACTTATTTATCAACATA AAATTGTTTGTTGTTCTTTTAGCCCTTTTCAGTCTTAAGTTGCGAAGTGTAAGTTTAGCCGAGTTTCCCAAGTTCAGACTGTTCAGTAAAGCCCACACTG - 85504_PtRNAdb chr-X.trna21-Lys-TTT NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 21 1990356 1990284 Lys TTT 0 0 89.6 66.00 23.60 Inf Lys 96.4 Phanerogamae -NA- Dicot GCCGTCTTAGCTCAGCCGGTAGAGCGCGTGGCTTTTAACCACGTGGtCGTGGGTTCGATTCCCACAGACGGCG 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GTGATTTTTTCTAAATATTATGTTAGGAAAATAGGGAAgagaaaagattaaaaagcTAGCCTTGATagataaaagataaatatcaTCGTAAAGAGTACTA GAAGTCgtgaattattttttgttttactttttaaacttcaattttatgaaaaagaagaaaaactcaGGAACTAACTTTTCGGTTTAGCAACTACCAACGC - 85505_PtRNAdb chr-X.trna22-Pro-AGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 22 1489359 1489288 Pro AGG 0 0 64.1 34.40 29.70 Inf Pro 107.3 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCTGAGTTCAATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AAGTGTCATATTGAAGCTGCCTCCTAGCATGCCCTTCTCCTTGGATGTTCTGCAACCTTTCCAGTGTATCAATACTCTCTTTCTActtttgaaccaataa ataagtttttattttataccatcaaagaaaaaataaccTGCATTTCAAGGTTGAAGAGATGGAGTGAACAAGCATCTCATGACTGTATTTTATCTCATCT - 85506_PtRNAdb chr-X.trna23-Ala-AGC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 23 711920 711848 Ala AGC 0 0 63.4 38.20 25.20 Inf Ala 98.3 Phanerogamae -NA- Dicot GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGtACGGGGATCGATACCCCGCATCTCCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GCCAGTTACTTCAGTTGATTGAGATACTAAAGCATTTTCCATACCAGATATGCTCTCCATAATGTTCGTATCTTCTTACAAAAAAGCAATGGTTCCCGTT TCTgctgtttttatattttcccAAAAGTTTTGCCTGTATAAGCCTTGTTATTTCCCTCACAGTATAAGGTTTCTCACATCCTTTCTAAACTTGAGCCATG - 85507_PtRNAdb chr-X.trna2-Phe-GAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 2 805419 805491 Phe GAA 0 0 78.3 58.40 19.90 Inf Phe 113.2 Phanerogamae -NA- Dicot GCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGtCGCGTGTTCGATCCACGCTCACCGCA 73 >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. ATTTGAGTTTTCTGGCAGTGTGGGTTTTGCCGGGTTTTTACCGGGTAGAAAGTCATGTGTGATCAGCTGATAGCcgttattttcttaaaaaattaaaaag agtttttaattttattaatattgtataatttatttatttattaattaatatcatgtattttttgttttatttttttattaacacggtactgttttatttt + 85508_PtRNAdb chr-X.trna3-Asp-GTC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 3 1490906 1490977 Asp GTC 0 0 69.8 46.80 23.00 Inf Asp 95.8 Phanerogamae -NA- Dicot GTCGTTGTAGTATAGTGGTgAGTATTCCCGCCTGTCACGCGGGTGaCCCGGGTTCGATCCCCGGCAACGGCG 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. AGAAGAAACATAACAAAGCATCCATTTCAAGTTAACATCGAACAAAACACAACACTCTAAATCAATTGAAGAACAAACAATTTAACACTTCGATAGCAAG GCATCTTTTTTCTACCTAAAAGCTTCCttcgaaaaagaaaaagggaaaacctttcttcttccttactcaacactttctttttcttttttgacacATTTTA + 85509_PtRNAdb chr-X.trna4-Val-CAC NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 4 1672439 1672512 Val CAC 0 0 82.4 54.40 28.00 Inf Val 103.7 Phanerogamae -NA- Dicot GTCTGGGTGGTGTAGTTGGTtATCACGCTAGTCTCACACACTAGAGGtCCCCGGTTCGAACCCGGGCTCAGACA 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. tatgaatttttttaagtattatgtcaaaaataaaattcatcaatttgtttggataaaatagCAAAACATATTTGTCCAGTTAAAAACCAAAGTCATAGTT tttatttaatgttttgttATACACATAATCCAGTGTGGACAGGAACTTTGTCAACTCcccataaaataaaaaaagagattaaatGATTCTAACTTCACCG + 85510_PtRNAdb chr-X.trna5-Phe-GAA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 5 1770062 1770134 Phe GAA 0 0 78.3 58.40 19.90 Inf Phe 113.2 Phanerogamae -NA- Dicot GCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGtCGCGTGTTCGATCCACGCTCACCGCA 73 >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. TTTTCTAAGAGTGAAGCGGAGAGACGGTGAAGCGTGAGACTGGTAGAGAATAAAGAAAACACTctaagataaataaaaaggtTGGCAAAAAGAAACGAAA attttataattatcacttactttttaatttttattatccATGGTTTAATGATCATTATGGTTTATGCTTTATAATTATcctttacttttaattatcCATG + 85511_PtRNAdb chr-X.trna6-Pro-AGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 6 2180720 2180790 Pro AGG 0 0 55.0 24.30 30.70 Inf Pro 83.5 Phanerogamae -NA- Dicot GGGCACTTGGTCTAGTGGTATGATTTTCGCTTAGGGTGCGAGGTcCCCGAGTTCAATTCTCGGAGTGCCCC 71 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TTCCACAGCTGTTAAGATCCAATCATGTTAATTCAAAGATTTGCAACTACTATTGGTTAAACTAAGTTATCTAGGGCTTGTGGAAGTGTGGCCAACAATT AATCATTCATACATTTAACTATAcctttaataatgattttttatcaataatagagaaattgaatgagTTAAAGGTGAGACAATAACAAatctcttttgtt + 85512_PtRNAdb chr-X.trna7-Cys-GCA NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 7 2289578 2289649 Cys GCA 0 0 82.1 59.90 22.20 Inf Cys 106.6 Phanerogamae -NA- Dicot GGGTCCATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCACCGGTTCGAACCCGGTTGGGCCCT 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GGATTTAAGATTCTCGATGGATGGCACAGGGTTGGATCGACGAGAATGCAACCCTCTTAGAAACAGTATTAATAATGTTTTGATAACATTAACAATATAC TCAAATTTAATCCCTTTTacaattaaacaataaaaatacaatACCACTACTCTCCCTTCCCCTTTCCCTCTGGATTTTTCCCTTTTGGTTTTACATTACA + 85513_PtRNAdb chr-X.trna8-His-GTG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 8 2992651 2992722 His GTG 0 0 63.0 33.70 29.30 Inf His 86.8 Phanerogamae -NA- Dicot GTGGCTGTAGTTTAGTGGTaAGAATTCCACGTTGTGGCCGTGGAGaCCTGGGCTCGAATCCCAGCAGCCACA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. TAAAGCAAAGGCATCCACCTTGATTCGATCCAACCAGCAAatctaaaagaaaattattttagagaagaaattaaactaatttgtCCAATACAAGCAACTC GTCATCCTGCTTTTCGGTCTTTTAAGACATCCTTAGAAACGACGCCGATTTAGTCTAAATTTAACCTGTTCGCCTATTAGTCATTCTTAGAAATGttggt + 85514_PtRNAdb chr-X.trna9-Pro-AGG NUCLEAR Theobroma_cacao GCA_000208745.2 chr-X 9 3058589 3058660 Pro AGG 0 0 67.4 34.70 32.70 Inf Pro 112.3 Phanerogamae -NA- Dicot GGGCATTTGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGAGTTCAATTCTCGGAATGCCCC 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TATTTGTCTAATCTTGTGTAAACTTAAAGAATGGACTTCAATCTGTATCCAAGAAAAGTTTGTGAGACCTGTTTACTAACTACAAAGATTACAACAAATT TAACAACCGTTCAAAGGGTTTTCTATCTGCTAAAAAGCACACTGGTTTTTGTCAGTTTCCACTCATTCCCAGTTGAGTCCTCTCCAGGCTTTCTTTTTat + 112482_PtRNAdb chl.trna10-Ala-TGC PLASTID Theobroma_cacao NC_014676.2 chl 10 109076 109180 Ala TGC 109113 109152 16.3 25.30 -9.00 Inf n/a n/a n/a Phanerogamae -NA- Dicot GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAAGGCGGTAAtGATAGTATcTTGTACCTG 65 >>>.>>>..>>>>........<<<<.>>>>>...............................................<<<<<.....>.......<<<<.<<<. ACGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTGCGCCAAGGAAAAGAATAGAAGAAGCATCTGACTCCTTCATGCATGCTCCACTTGGCTCG AACCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGACAAAGATGGGCTGTCAAGAACGTAGAAGA + 112483_PtRNAdb chl.trna11-Arg-ACG PLASTID Theobroma_cacao NC_014676.2 chl 11 113812 113885 Arg ACG 0 0 57.7 41.30 16.40 Inf n/a n/a n/a Phanerogamae -NA- Dicot GGGCCTGTAGCTCAGAGGAttAGAGCACGTGGCTACGAACCACGGTGtCGGGGGTTCGAATCCCTCCTCGCCCA 74 >>>>..>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<..<<<<. AGGCGCTTTCACATCTTCTTAACCCGAAATGGCTGGGGAGAGGAAAGGTTCCTTTTTTTTTTAGGGTACTCCTGGGAACAGATCCAGTGGAGACGAGGTG CAACCGGCCCAAAAGGGAAGGACCTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGCGTGGGTCTTTTGC + 112484_PtRNAdb chl.trna12-Leu-TAG PLASTID Theobroma_cacao NC_014676.2 chl 12 119503 119582 Leu TAG 0 0 57.3 28.70 28.60 Inf n/a n/a n/a Phanerogamae -NA- Dicot GCCGCTATGGTGAAATCGGTaGACACGCTGCTCTTAGGAAGCAGTGCTAGAGCATCTCGGTTCGAGTCCGAGTGGCGGCA 80 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..<<<..>>>>>.......<<<<<<<<<<<<. ATTCATCAATTTAAATTAAATGCTTCCTAAAAAATTTTACATTGAATTGACTTCCATCTCGACGATTGAATAAAAAATGGGTTATTATGATTTCGAGCAA TAGTATCTTCTAAAAGAGATAGAATAAGTCCTATAATGAATTTAATAATGAATTTAATTCTTGATTTCCATTCCATAAAATCTAGGAACCCTTGCTTTTT + 112485_PtRNAdb chl.trna13-Asn-GTT PLASTID Theobroma_cacao NC_014676.2 chl 13 135385 135456 Asn GTT 0 0 68.7 42.80 25.90 Inf n/a n/a n/a Phanerogamae -NA- Dicot TCCTCAGTAGCTCAGCGGTAGAGCGGTCGGCTGTTAACTGACTGGtCGTAGGTTCGAATCCTACTTGAGGAG 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CTACGAAGAAGTTCCGGGGGTTACGAAGGAAACTTCGAGTTCATATTGGTCATGGGTTGAGAACGGGAATTGAACTCTATGAGATCTAATCTCCCGTTGT ATTTGATTCATTCCGAATTAAAGAATTCAGAATGTCAGAATGAAAGGGTTCGCTTTGACCGTTAAGAGCAGGTAACCCATTCCCTGTGTCTTTGTTTCTA + 112486_PtRNAdb chl.trna14-Leu-CAA PLASTID Theobroma_cacao NC_014676.2 chl 14 150465 150545 Leu CAA 0 0 62.3 34.40 27.90 Inf n/a n/a n/a Phanerogamae -NA- Dicot GCCTTGGTGGTGAAATGGTaGACACGCGAGACTCAAAATCTCGTGCTAAAGAGCGTGGAGGTTCGAGTCCTCTTCAAGGCA 81 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<. CCGATCAATAGAAATACTCCAACACTCCACCTTTGTCATATATTCCATACATCGCACTAGATAGATATCATATTCATGGAATACGATTCACTTTCAAGAT TAATATTGAGAATGCTCATTGAATTGGAATAAGTTCGGCAGCGGATCACGAGATCTTGGTGATCTTCTCTATCTAATGAATGGGGAGTCCGCTTTGAAAT + 112487_PtRNAdb chl.trna15-Met-CAT PLASTID Theobroma_cacao NC_014676.2 chl 15 158471 158544 Met CAT 0 0 70.4 43.60 26.80 Inf n/a n/a n/a Phanerogamae -NA- Dicot GCATCCATGGCTGAATGGTtAAAGCGCCCAACTCATAATTGGcGAATtCGTAGGTTCAATTCCTACTGGATGCA 74 >>>>>>>..>>>..........<<<.>>>>>.......<<<<.<.....>>>>>.......<<<<<<<<<<<<. ATGTCCTTTCATTGATTCCTCCTAAATTGCATTGATTTATCCTAAAGATTTCATTTCAATTGGAATTTGGTTATTCACCATGTACGAGGATCCCCGCTAA CGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCATCTATACATAACGAATTGGTGTGGTATATTCATATCATA + 112488_PtRNAdb chl.trna16-Val-GAC PLASTID Theobroma_cacao NC_014676.2 chl 16 144053 143982 Val GAC 0 0 58.9 28.60 30.30 Inf n/a n/a n/a Phanerogamae -NA- Dicot AGGGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGtCATCAGTTCGAGCCTGATTATCCCTA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GAAAGCCTGGCTCCAAGTTGTTCAAGAATAGTGGCGTTGTTGAGTTTCTCGATCCTTTGCCTTAGGATTAGTCAGTTCTATTTCTTGATGGGGGCAGGGA AACCCAATGTGAGTTTTTCTATTTTGCCTTGCTCCCCCGCCGTGATCGAATAAGAATGGATAAGAGGCTCGTGGGATTGACGTGAGGGGGTAGGGATGGC - 112489_PtRNAdb chl.trna17-Ile-GAT PLASTID Theobroma_cacao NC_014676.2 chl 17 141970 141883 Ile GAT 141934 141919 16.4 0.00 16.40 Inf n/a n/a n/a Phanerogamae -NA- Dicot GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATATGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCA 72 >>>>>>>..>>>>.......<<<<..>>>>.......................<<<<...>>>>><<<<<..>>>..<<<<<<<<<<. TCCCTCCCGTGTGGCGACATGGGGGCGTAAAAAGGAAAGAGAGGGATGGGGTTTCTCTCGCTTTTGGCATAGCGGGCCCCCAGCGGGAGGCCCGCACGAC ATGTGCTCATCAGCGCCTGACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTCGAACCGGGGTTTGAAACCAAACTTCTC - 112490_PtRNAdb chl.trna18-Ala-TGC PLASTID Theobroma_cacao NC_014676.2 chl 18 140877 140773 Ala TGC 140840 140801 16.3 25.30 -9.00 Inf n/a n/a n/a Phanerogamae -NA- Dicot GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAAGGCGGTAAtGATAGTATcTTGTACCTG 65 >>>.>>>..>>>>........<<<<.>>>>>...............................................<<<<<.....>.......<<<<.<<<. ACGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTGCGCCAAGGAAAAGAATAGAAGAAGCATCTGACTCCTTCATGCATGCTCCACTTGGCTCG AACCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGACAAAGATGGGCTGTCAAGAACGTAGAAGA - 112491_PtRNAdb chl.trna19-Arg-ACG PLASTID Theobroma_cacao NC_014676.2 chl 19 136141 136068 Arg ACG 0 0 57.7 41.30 16.40 Inf n/a n/a n/a Phanerogamae -NA- Dicot GGGCCTGTAGCTCAGAGGAttAGAGCACGTGGCTACGAACCACGGTGtCGGGGGTTCGAATCCCTCCTCGCCCA 74 >>>>..>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<..<<<<. AGGCGCTTTCACATCTTCTTAACCCGAAATGGCTGGGGAGAGGAAAGGTTCCTTTTTTTTTTAGGGTACTCCTGGGAACAGATCCAGTGGAGACGAGGTG CAACCGGCCCAAAAGGGAAGGACCTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGCGTGGGTCTTTTGC - 112492_PtRNAdb chl.trna1-Arg-TCT PLASTID Theobroma_cacao NC_014676.2 chl 1 10104 10175 Arg TCT 0 0 67.2 38.60 28.60 Inf n/a n/a n/a Phanerogamae -NA- Dicot GCGTCCATTGTCTAATGGAtAGGACAGAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCA 72 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. CCTAAAATTTTTTCACATGTTCTTTAGTTTTTCCAAACAAGAGAAAAGAAAAAACCGAACAAGAGAAAAAAGTAAAAATGTAAAAAAATCGTAATGAAAA ATTTAGAATCTATTTCCATATATTCCATATATATACATATATTCCATATATAATATTATAATTATTATAATATAATTTTATTATTATTATTATTATGATT + 112493_PtRNAdb chl.trna20-Asn-GTT PLASTID Theobroma_cacao NC_014676.2 chl 20 114568 114497 Asn GTT 0 0 68.7 42.80 25.90 Inf n/a n/a n/a Phanerogamae -NA- Dicot TCCTCAGTAGCTCAGCGGTAGAGCGGTCGGCTGTTAACTGACTGGtCGTAGGTTCGAATCCTACTTGAGGAG 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CTACGAAGAAGTTCCGGGGGTTACGAAGGAAACTTCGAGTTCATATTGGTCATGGGTTGAGAACGGGAATTGAACTCTATGAGATCTAATCTCCCGTTGT ATTTGATTCATTCCGAATTAAAGAATTCAGAATGTCAGAATGAAAGGGTTCGCTTTGACCGTTAAGAGCAGGTAACCCATTCCCTGTGTCTTTGTTTCTA - 112494_PtRNAdb chl.trna21-Leu-CAA PLASTID Theobroma_cacao NC_014676.2 chl 21 99488 99408 Leu CAA 0 0 62.3 34.40 27.90 Inf n/a n/a n/a Phanerogamae -NA- Dicot GCCTTGGTGGTGAAATGGTaGACACGCGAGACTCAAAATCTCGTGCTAAAGAGCGTGGAGGTTCGAGTCCTCTTCAAGGCA 81 >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<. CCGATCAATAGAAATACTCCAACACTCCACCTTTGTCATATATTCCATACATCGCACTAGATAGATATCATATTCATGGAATACGATTCACTTTCAAGAT TAATATTGAGAATGCTCATTGAATTGGAATAAGTTCGGCAGCGGATCACGAGATCTTGGTGATCTTCTCTATCTAATGAATGGGGAGTCCGCTTTGAAAT - 112495_PtRNAdb chl.trna22-Met-CAT PLASTID Theobroma_cacao NC_014676.2 chl 22 91482 91409 Met CAT 0 0 70.4 43.60 26.80 Inf n/a n/a n/a Phanerogamae -NA- Dicot GCATCCATGGCTGAATGGTtAAAGCGCCCAACTCATAATTGGcGAATtCGTAGGTTCAATTCCTACTGGATGCA 74 >>>>>>>..>>>..........<<<.>>>>>.......<<<<.<.....>>>>>.......<<<<<<<<<<<<. ATGTCCTTTCATTGATTCCTCCTAAATTGCATTGATTTATCCTAAAGATTTCATTTCAATTGGAATTTGGTTATTCACCATGTACGAGGATCCCCGCTAA CGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCATCTATACATAACGAATTGGTGTGGTATATTCATATCATA - 112496_PtRNAdb chl.trna23-Pro-TGG PLASTID Theobroma_cacao NC_014676.2 chl 23 71344 71271 Pro TGG 0 0 65.6 40.90 24.70 Inf n/a n/a n/a Phanerogamae -NA- Dicot AGGGATGTAGCGCAGCTtGGTAGCGCGTTTGTTTTGGGTACAAAATGtCACGGGTTCAAATCCTGTCATCCCTA 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. AGAGGAAATGGAAAGATGATTTTTGTATATCACATAGATGAAATAAGGGTGTGGAAAACAAGACAGGGATTCTCTACAATGACATTGTAGACCAATCGAA CCTATTACTTCTCCTTTGAGCAGTAACGAGGGAGCCATTTTAGATTGATTAAAATTAAGCATACATAACATTTTCTCATATTATATATGATATATGATAG - 112497_PtRNAdb chl.trna24-Trp-CCA PLASTID Theobroma_cacao NC_014676.2 chl 24 71092 71019 Trp CCA 0 0 71.9 42.80 29.10 Inf n/a n/a n/a Phanerogamae -NA- Dicot GCGCTCTTAGTTCAGTTcGGTAGAACGTGGGTCTCCAAAACCCAATGtCGTAGGTTCAAATCCTACAGAGCGTG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TATTATATATGATATATGATAGTATAGGTGTGCATGATGTATTGGGGTTATAAAATAAAAGAATCCTCTTTTTTACAGTCTTATTTATTATGATAAGAAA ATTCCGCTCTTGTTAGGTCGAAAATTACACCGAACTGAAAAAAAAAAAAAATGCAACAGCAATTCGAATTTGACCCCCTTGGATTAAATTTAAGGGGTCA - 112498_PtRNAdb chl.trna25-Thr-TGT PLASTID Theobroma_cacao NC_014676.2 chl 25 49427 49355 Thr TGT 0 0 69.3 47.60 21.70 Inf n/a n/a n/a Phanerogamae -NA- Dicot GCCCGCTTAGCTCAGAGGTtAGAGCATCGCATTTGTAATGCGATGGtCATCGGTTCGATTCCGATAGCCGGCT 73 >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<. TCTATAATTCATATTAATTATGAATAACTAATAGATAGTTAATAGATAAGATCGTAATAGTTTGCTGAATTCCTATGGATACAAAATTTCTATTATTTGA TTCTCTATTTGTTTGATTTTTTACATGATTGATAATGTTTTTTTGAAATCAAAGAACATTGAAAAAGCTTTGTCCCCTTTTCTTTCCAAGGGTCACCGAT - 112499_PtRNAdb chl.trna26-Met-CAT PLASTID Theobroma_cacao NC_014676.2 chl 26 39040 38967 Met CAT 0 0 66.9 39.90 27.00 Inf n/a n/a n/a Phanerogamae -NA- Dicot CGCGGGATAGAGCAGTTtGGTAGCTCGCAAGGCTCATAACCTTGAGGtCATGGGTTCAAATCCCGTTCCCGCAA 74 .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.. CATTCTGTATAAATAAGCTATTCTATTTGTACAGATATGGAAGAGGGGCGCATTCAATCTTTGTTTGTCCATTAGTTTAGTTCCTAGGGTTTCTTTTCAT CATTTTTTTGACAAAAAAATTAGACTTGACTCTATTAACTAGTAATTAATTAACACTTTTCTTTTAGGGGGGTGTATTATATTACATTACAGTCAACTAT - 112500_PtRNAdb chl.trna27-Ser-TGA PLASTID Theobroma_cacao NC_014676.2 chl 27 37472 37380 Ser TGA 0 0 81.5 50.70 30.80 Inf n/a n/a n/a Phanerogamae -NA- Dicot GGAGAGATGGCTGAGTGGTtgATAGCTCCGGTCTTGAAAACCGGTATAGTTCGAAacaAaGAACTATCGAGGGTTCGAATCCCTCTCTCTCCT 93 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.>>>>>>>........<<<<<<<.>>>>>.......<<<<<<<<<<<<. ATAGGTTCACACACGAGATCTTTCTATACATAGTGATGGTATCAACTCATATGGCCATGTTCGATTCGGTGGAATAAAAATAAAATAGAAATTAGCTTTC TTTGCTCGATGAATAGATTTCTTTCTTTATTGCTTTTTCCTGGCTTCTTTATTAAGAATCTTAATATTAATAAAAGGTAATGGCTCGGCTGGGTGGAATA - 112501_PtRNAdb chl.trna28-Glu-TTC PLASTID Theobroma_cacao NC_014676.2 chl 28 32361 32289 Glu TTC 0 0 52.4 27.50 24.90 Inf n/a n/a n/a Phanerogamae -NA- Dicot GCCCCCATCGTCTAGCGGTtcAGGACATCTCTCTTTCAAGGAGGCAGCGGGGATTCGACTTCCCCTGGGGGTA 73 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. AGAAAAAGCTTTCGGATCTAGTCATATCATTCCATTATATTGACAATTTCAAAAAACTGTTCATACTATGAGCATAGTATGATGGCGGTTAGGCAAATAT GGGTACTACGAAAGGAAGTTGATCATGGATTATCAATAAACCTAGAATTGATTCTTCCTGGGTCGATGCCCGAGCGGTTAATGGGGACGGACTGTAAATT - 112502_PtRNAdb chl.trna29-Tyr-GTA PLASTID Theobroma_cacao NC_014676.2 chl 29 32229 32146 Tyr GTA 0 0 62.3 40.60 21.70 Inf n/a n/a n/a Phanerogamae -NA- Dicot GGGTCGATGCCCGAGCGGTtaATGGGGACGGACTGTAAATTCGTTGGCAATATGTCTaCGCTGGTTCAAATCCAGCTCGGCCCA 84 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.>>>>...<<<<...>>>>>.......<<<<<<<<<<<<. CTTTCAAGGAGGCAGCGGGGATTCGACTTCCCCTGGGGGTAGGGTACTACGAAAGGAAGTTGATCATGGATTATCAATAAACCTAGAATTGATTCTTCCT ATAATTCGCTGATCCGCCATAACATAAAACGATATAACCCATTTTTTTGTATTTTGTTTTCCAGAAAAGCCAAACAAAAATAGGGAAGAATACAAAAAAA - 112503_PtRNAdb chl.trna2-Cys-GCA PLASTID Theobroma_cacao NC_014676.2 chl 2 28928 28999 Cys GCA 0 0 64.8 39.70 25.10 Inf n/a n/a n/a Phanerogamae -NA- Dicot GGCGACATGGCCGAGCGGTAAGGCGGGGGACTGCAAATCCCTTATtCCCCAGTTCAAATCCGGGTGTCGCCT 72 >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<. TAGGCAAGGGATTAACGAAAAAAAGGAATTCAACACGGAAAGTACAATAATAAAAAAAGGGGGGGGTACTCTCATTTTTTTGTTTGGAGCCTTTTCTTTT GATCAACAAAAAACTCGAAATCCTCTATTCTGTTTTGCTGATATAACTCGACAAATTTTCTCCAGCAAAAACAAGTGTAAGAAAAGGACTCTTGATACTT + 112504_PtRNAdb chl.trna30-Asp-GTC PLASTID Theobroma_cacao NC_014676.2 chl 30 31646 31573 Asp GTC 0 0 67.0 49.50 17.50 Inf n/a n/a n/a Phanerogamae -NA- Dicot GGGATTGTAGTTCAATTGGTcAGAGCACCGCCCTGTCAAGGCGGAAGcTGCGGGTTCGAGCCCCGTCAGTCCCG 74 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GTTTGTTACAACACGGCGATTCGAATCTAAAATCTAAATAGAAAATGGCTTGAATGAAATTATAAGAATATCTATGCTGTACACTTTTCTTTATTTCCCT ACGGATACAATAAAAAAAATACATCAATTCATCCCTCCATTTTCTGTGAAAGGAGATACAAATGACAGAATTTCATTCCCAACGATATCTTTTTTTTATT - 112505_PtRNAdb chl.trna31-Ser-GCT PLASTID Theobroma_cacao NC_014676.2 chl 31 8263 8176 Ser GCT 0 0 70.9 53.00 17.90 Inf n/a n/a n/a Phanerogamae -NA- Dicot GGAGAGATGGCTGAGTGGActAAAGCGTCGGATTGCTAATCCGTTGTGCGATTTATTCGTACCGAGGGTTCGAATCCCTCTCTTTCCG 88 >>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<. TACTCTATATAGATTAATAATAATCTATAAAGTAAGGGCTTTTTTCAAGCATTTCTTTTTGTGTGCTGTAACATAGTAATTATCTTTTTTTTCTCAATTA TTTCGGTTTTTGACAGTGGAATAGATCAAATCCTAATACCATTTATAAAAATGAAGCAAGGAACTCTCCTTTTTTTATTCTTCGCGTCCAGGATTACGTC - 112506_PtRNAdb chl.trna32-Gln-TTG PLASTID Theobroma_cacao NC_014676.2 chl 32 7053 6982 Gln TTG 0 0 59.5 38.60 20.90 Inf n/a n/a n/a Phanerogamae -NA- Dicot TGGGGCGTAGCCAAGTGGTAAGGCAACGGGTTTTGGTCCCGCTATtCGGAGGTTCGAATCCTTCCGTCCCAG 72 >>>>>>>..>>>.........<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<. CCTAGCAAGAATCTAATCTATTCCATAGCTATTTGGAACTGGAATTGACGAACAAGGAATACCCATATTAGTGTTTAGTAGGGTCAAATAGAAATCTAAA AGCATACTCTTTTTATATATCAGAATAACGATATCTGAATCTAAATTGCTCTTTTTTTTTTTAACAACCTTCTTTCTAAGAGTCAAATATTGGAGAAAAT - 112507_PtRNAdb chl.trna33-His-GTG PLASTID Theobroma_cacao NC_014676.2 chl 33 76 3 His GTG 0 0 62.8 44.70 18.10 Inf n/a n/a n/a Phanerogamae -NA- Dicot GCGGATGTAGCCAAGTGGAtcAAGGCAGTGGATTGTGAATCCACCATgCGCGGGTTCAATTCCCGTCGTTCGCC 74 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GAAATAAGATAAAAAATAATGATGAATCGTAGAAATGGAAATCTTTGAACTTAAAATTTGAAATATTTAAAGAAATAAAAAAAAATAGTATAGTAGAGGG CA - 112508_PtRNAdb chl.trna3-Thr-GGT PLASTID Theobroma_cacao NC_014676.2 chl 3 33183 33254 Thr GGT 0 0 65.9 36.40 29.50 Inf n/a n/a n/a Phanerogamae -NA- Dicot GCCCTTTTAACTCAGTGGTAGAGTAACGCCATGGTAAGGCGTAAGtCATCGGTTCAAATCCGATAAGGGGCT 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CTGAATGAGCTACTAGCCACTATGAGTCTACTGCATATACTTATATATATATAAATAGATCTTATCCGTCTACTGATTCATTCAGTAATTGAATCGAACG TTGGCTTTTTTTTTCATAAAACTCCAGTGAAATAGTAGTATTCATATTTAAACGAAGATTGTTTTTATTGGTAATAAAAAACCAACTGTATATGGATAAT + 112509_PtRNAdb chl.trna4-Gly-GCC PLASTID Theobroma_cacao NC_014676.2 chl 4 38761 38831 Gly GCC 0 0 63.0 44.00 19.00 Inf n/a n/a n/a Phanerogamae -NA- Dicot GCGGATATAGTCGAATGGTAAAATTTCTCTTTGCCAAGGAGAAGACGCGGGTTCGATTCCCGCTATCCGCC 71 >>>>>>>..>>...........<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. GTGGAATTTGATAAAATCGCCCTGAACTGAAGAAAGTATCTGTCCTAGCTCTGACCAAATATTATCCAGACCTTTCATATCAAGAATCAAGAACGAAAAT CAGGGCAATGTATTTAAGAGGATAAAAGATTCGTTATAGTTGACTGTAATGTAATATAATACACCCCCCTAAAAGAAAAGTGTTAATTAATTACTAGTTA + 112510_PtRNAdb chl.trna5-Ser-GGA PLASTID Theobroma_cacao NC_014676.2 chl 5 47965 48051 Ser GGA 0 0 73.7 46.50 27.20 Inf n/a n/a n/a Phanerogamae -NA- Dicot GGAGAGATGGCCGAGTGGTtcAAGGCGTAGCATTGGAACTGCTATGTAGACTTTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCG 87 >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<. ATTTTTATAGCTAGTTTTATAGTTAGAATTCGTACCTATCGAACAATCTAATATGAATAACTCGCTATTCGCTCGGGTTATCGGCCATAATCATTATGTA CACCTTCACCTAATTCGCCAATGTAACTGACTACAATGTATCAAATCAAATAAGAACAGATACTAAAGAGTTAGACCCTTCTTTGATCTTTGATATGGAT + 112511_PtRNAdb chl.trna6-Phe-GAA PLASTID Theobroma_cacao NC_014676.2 chl 6 51639 51711 Phe GAA 0 0 68.5 46.00 22.50 Inf n/a n/a n/a Phanerogamae -NA- Dicot GTCGGGATAGCTCAGTTGGTAGAGCAGAGGACTGAAAATCCTCGTGtCACCAGTTCAAATCTGGTTCCTGGCA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. TTCGAGACTTTTAATACTTTTTCGTTTTTTTTTTTGTTTTCATTTTTAATTGACATAGACCCAAGTCATCTAGTATTATGAGGATAATGCGTCGGTAATG TATGATTAATTTGTATGAGTATCTACTCTACAAATTAATTGATATGGATCGACATAATACATACTTATCCAGCTAGGTATCTGAAAGTAAACCCTCTCTT + 112512_PtRNAdb chl.trna7-Met-CAT PLASTID Theobroma_cacao NC_014676.2 chl 7 56242 56314 Met CAT 0 0 59.5 35.70 23.80 Inf n/a n/a n/a Phanerogamae -NA- Dicot ACCTACTTAACTCAGTGGTtAGAGTATTGCTTTCATACGGCGGGAGtCATTGGTTCAAATCCAATAGTAGGTA 73 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. CTGTTTGATTGGTATTGCTTAGAAGTAATATTGGATTTATAATCCATCGATGTGATAGGTCCCCTTTCTTTCTCTTTATGATTCCTTATGATAATAAATG GAACTTATTAGATACCATTGATCCCGGTGTCTAATAAGTTTTTCTACCCACCTTCTTTTATTGATTTTCTATCTTTTTCATCCTATTCTATTTCCGTTTT + 112513_PtRNAdb chl.trna8-Val-GAC PLASTID Theobroma_cacao NC_014676.2 chl 8 105900 105971 Val GAC 0 0 58.9 28.60 30.30 Inf n/a n/a n/a Phanerogamae -NA- Dicot AGGGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGtCATCAGTTCGAGCCTGATTATCCCTA 72 >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. GAAAGCCTGGCTCCAAGTTGTTCAAGAATAGTGGCGTTGTTGAGTTTCTCGATCCTTTGCCTTAGGATTAGTCAGTTCTATTTCTTGATGGGGGCAGGGA AACCCAATGTGAGTTTTTCTATTTTGCCTTGCTCCCCCGCCGTGATCGAATAAGAATGGATAAGAGGCTCGTGGGATTGACGTGAGGGGGTAGGGATGGC + 112514_PtRNAdb chl.trna9-Ile-GAT PLASTID Theobroma_cacao NC_014676.2 chl 9 107983 108070 Ile GAT 108019 108034 16.4 0.00 16.40 Inf n/a n/a n/a Phanerogamae -NA- Dicot GGGCTATTAGCTCAGTGGTAGAGCGCGCCCCTGATATGGGCTGTGAGGGCTCTCAGCCACATGGATAGTTCA 72 >>>>>>>..>>>>.......<<<<..>>>>.......................<<<<...>>>>><<<<<..>>>..<<<<<<<<<<. TCCCTCCCGTGTGGCGACATGGGGGCGTAAAAAGGAAAGAGAGGGATGGGGTTTCTCTCGCTTTTGGCATAGCGGGCCCCCAGCGGGAGGCCCGCACGAC ATGTGCTCATCAGCGCCTGACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTCGAACCGGGGTTTGAAACCAAACTTCTC +