PtRF Id Plant Name tRF Type Tissue Gene Coordinates tRNA Name Anticodon GSM Number PMID Sequence PT-564 Oryza sativa tRF-1 Wild type seedling chr10:10291332-10291485 chr10.trna64-HisGTG HisGTG GSM520636 20381393,27681945 AGTGCTGCTTGCGATTTGGTTCCT PT-565 Oryza sativa tRF-1 Wild type seedling chr10:10291332-10291485 chr10.trna64-HisGTG HisGTG GSM520635 20381393,27681945 AGTGCTGCTTGCGATTTGGTTCCT PT-2239 Oryza sativa Japonica Group tRF-1 1.0-2.0 cm panicles, 58S, long-day growth conditions chr4:23629850-23630003 chr4.trna41-HisGTG HisGTG GSM2253139 27965387 TAAATGTGGGTTTATTCTGC PT-10167 Oryza sativa Japonica Group tRF-5 1.0-2.0 cm panicles, pms1 RNAi negative, long-day growth conditions chr10:10372854-10372927 chr10.trna13-HisGTG HisGTG GSM2253137 27965387 AATGTTGACATTCAGATCCACGTC PT-10168 Oryza sativa tRF-5 Panicle chr10:10372854-10372927 chr10.trna13-HisGTG HisGTG GSM1288571 26471296 AATGTTGACATTCAGATCCACGTC PT-10169 Oryza sativa Japonica Group tRF-5 1.0-2.0 cm panicles, pms1 ox positive, long-day growth conditions chr10:10372854-10372927 chr10.trna13-HisGTG HisGTG GSM2253132 27965387 AATGTTGACATTCAGATCCACGTC PT-10170 Oryza sativa tRF-5 inflorescences chr10:10372854-10372927 chr10.trna13-HisGTG HisGTG GSM647193 22862743 AATGTTGACATTCAGATCCACGTC PT-10171 Oryza sativa Japonica Group tRF-5 0.5-1.0 cm panicles, long-day growth conditions, 58S chr10:10372854-10372927 chr10.trna13-HisGTG HisGTG GSM2253106 27965387 AATGTTGACATTCAGATCCACGTC PT-10172 Oryza sativa Japonica Group tRF-5 1.0-2.0 cm panicles, pms1 ox positive, long-day growth conditions chr10:10372854-10372927 chr10.trna13-HisGTG HisGTG GSM2253133 27965387 AATGTTGACATTCAGATCCACGTC PT-10173 Oryza sativa Japonica Group tRF-5 1.0-2.0 cm panicles, pms1 RNAi negative, long-day growth conditions chr10:10372854-10372927 chr10.trna13-HisGTG HisGTG GSM2253136 27965387 AATGTTGACATTCAGATCCACGTC PT-10174 Oryza sativa tRF-5 Panicle chr10:10372854-10372927 chr10.trna13-HisGTG HisGTG GSM1288569 26471296 AATGTTGACATTCAGATCCACGTC PT-10175 Oryza sativa Japonica Group tRF-5 1.0-2.0 cm panicles, long-day growth conditions, NIL(MH) chr10:10372854-10372927 chr10.trna13-HisGTG HisGTG GSM2253120 27965387 AATGTTGACATTCAGATCCACGTC PT-154492 Oryza sativa tRF-5 Panicle chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1288579 26471296 GAAGGTGCGGCTGGATCACCTCCT PT-154493 Oryza sativa tRF-5 inflorescences chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM647193 22862743 GAAGGTGCGGCTGGATCACCTCCT PT-154494 Oryza sativa Indica Group tRF-5 fully expanded third leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM2049378 27150822 GAAGGTGCGGCTGGATCACCTCCT PT-154495 Oryza sativa tRF-5 Leaf3 chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM409324 19584097 GAAGGTGCGGCTGGATCACCTCCT PT-154496 Oryza sativa Japonica Group tRF-5 MDJ8 leaves before treatment as control, biological replicate 1 chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695932 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154497 Oryza sativa Japonica Group tRF-5 Rb49 leaves with 4 hours post mock treatment, technical replicate 2 chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695947 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154498 Oryza sativa tRF-5 Seedling chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM455965 19903869 GAAGGTGCGGCTGGATCACCTCCT PT-154499 Oryza sativa tRF-5 shoot, potassium-deficient medium chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM816727 22158467 GAAGGTGCGGCTGGATCACCTCCT PT-154500 Oryza sativa Japonica Group tRF-5 wild type rice leaves chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1547539 26233894 GAAGGTGCGGCTGGATCACCTCCT PT-154501 Oryza sativa tRF-5 inflorescences chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM647194 22862743 GAAGGTGCGGCTGGATCACCTCCT PT-154502 Oryza sativa tRF-5 panicle, control chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM816731 22158467 GAAGGTGCGGCTGGATCACCTCCT PT-154503 Oryza sativa tRF-5 Panicle chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1288571 26471296 GAAGGTGCGGCTGGATCACCTCCT PT-154504 Oryza sativa Indica Group tRF-5 fully expanded third leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM2049385 27150822 GAAGGTGCGGCTGGATCACCTCCT PT-154505 Oryza sativa tRF-5 panicle, drought chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM816734 22158467 GAAGGTGCGGCTGGATCACCTCCT PT-154506 Oryza sativa tRF-5 Panicle chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1288566 26471296 GAAGGTGCGGCTGGATCACCTCCT PT-154507 Oryza sativa tRF-5 seedling, control chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM816687 22158467 GAAGGTGCGGCTGGATCACCTCCT PT-154508 Oryza sativa Japonica Group tRF-5 MDJ8 leaves with 24 hours post mock treatment chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695935 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154509 Oryza sativa tRF-5 rdr2-2 seedling chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM520639 20381393,27681945 GAAGGTGCGGCTGGATCACCTCCT PT-154510 Oryza sativa Indica Group tRF-5 fully expanded third leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM2049383 27150822 GAAGGTGCGGCTGGATCACCTCCT PT-154511 Oryza sativa tRF-5 Panicle chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1288569 26471296 GAAGGTGCGGCTGGATCACCTCCT PT-154512 Oryza sativa Japonica Group tRF-5 Rb49 leaves with 4 hours post mock treatment, technical replicate 1 chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695942 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154513 Oryza sativa tRF-5 Flag Leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1288577 26471296 GAAGGTGCGGCTGGATCACCTCCT PT-154514 Oryza sativa Indica Group tRF-5 fully expanded third leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM2049384 27150822 GAAGGTGCGGCTGGATCACCTCCT PT-154515 Oryza sativa tRF-5 Flag Leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1288576 26471296 GAAGGTGCGGCTGGATCACCTCCT PT-154516 Oryza sativa tRF-5 Flag Leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1288575 26471296 GAAGGTGCGGCTGGATCACCTCCT PT-154517 Oryza sativa Japonica Group tRF-5 MDJ8 leaves before treatment as control, biological replicate 2 chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695939 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154518 Oryza sativa tRF-5 Panicle chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1288567 26471296 GAAGGTGCGGCTGGATCACCTCCT PT-154519 Oryza sativa Indica Group tRF-5 fully expanded third leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM2049381 27150822 GAAGGTGCGGCTGGATCACCTCCT PT-154520 Oryza sativa Japonica Group tRF-5 Rb49 leaves with 24 hours post mock treatment chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695943 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154521 Oryza sativa Indica Group tRF-5 fully expanded third leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM2049382 27150822 GAAGGTGCGGCTGGATCACCTCCT PT-154522 Oryza sativa Japonica Group tRF-5 MDJ8 leaves with 4 hours post PXO61 treatment chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695937 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154523 Oryza sativa Japonica Group tRF-5 Osaba1-1 rice leaves chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1547540 26233894 GAAGGTGCGGCTGGATCACCTCCT PT-154524 Oryza sativa tRF-5 Flag Leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1288573 26471296 GAAGGTGCGGCTGGATCACCTCCT PT-154525 Oryza sativa tRF-5 Flag Leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1288572 26471296 GAAGGTGCGGCTGGATCACCTCCT PT-154526 Oryza sativa Japonica Group tRF-5 Rb49 leaves with 2 hours post PXO61 treatment chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695944 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154527 Oryza sativa Japonica Group tRF-5 Rb49 leaves with 4 hours post PXO61 treatment chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695945 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154528 Oryza sativa Japonica Group tRF-5 MDJ8 leaves with 4 hours post mock treatment chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695934 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154529 Oryza sativa Japonica Group tRF-5 MDJ8 leaves with 24 hours post PXO61 treatment chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695938 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154530 Oryza sativa Japonica Group tRF-5 MDJ8 leaves with 2 hours post PXO61 treatment chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695936 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154531 Oryza sativa tRF-5 DCL1IR-2 seedling chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM520637 20381393,27681945 GAAGGTGCGGCTGGATCACCTCCT PT-154532 Oryza sativa Indica Group tRF-5 fully expanded third leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM2049379 27150822 GAAGGTGCGGCTGGATCACCTCCT PT-154533 Oryza sativa tRF-5 Flag Leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1288574 26471296 GAAGGTGCGGCTGGATCACCTCCT PT-154534 Oryza sativa tRF-5 Leaf1 chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM409322 19584097 GAAGGTGCGGCTGGATCACCTCCT PT-154535 Oryza sativa tRF-5 Wild type seedling chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM520640 20381393,27681945 GAAGGTGCGGCTGGATCACCTCCT PT-154536 Oryza sativa tRF-5 dcl3a-17 seedling chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM520638 20381393,27681945 GAAGGTGCGGCTGGATCACCTCCT PT-154537 Oryza sativa Japonica Group tRF-5 MDJ8 leaves with 2 hours post mock treatment chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695933 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154538 Oryza sativa Japonica Group tRF-5 Rb49 leaves with 2 hours post mock treatment chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695941 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154539 Oryza sativa Indica Group tRF-5 fully expanded third leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM2049380 27150822 GAAGGTGCGGCTGGATCACCTCCT PT-154540 Oryza sativa tRF-5 Leaf2 chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM409323 19584097 GAAGGTGCGGCTGGATCACCTCCT PT-154541 Oryza sativa Japonica Group tRF-5 Rb49 leaves with 24 hours post PXO61 treatment chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695946 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154542 Oryza sativa Indica Group tRF-5 fully expanded third leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM2049377 27150822 GAAGGTGCGGCTGGATCACCTCCT PT-154543 Oryza sativa Japonica Group tRF-5 Rb49 leaves before treatment as control chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1695940 26335702 GAAGGTGCGGCTGGATCACCTCCT PT-154544 Oryza sativa tRF-5 Panicle chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1288568 26471296 GAAGGTGCGGCTGGATCACCTCCT PT-154545 Oryza sativa tRF-5 the fourth leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1525455 GAAGGTGCGGCTGGATCACCTCCTT PT-154546 Oryza sativa tRF-5 the fourth leaf chr4:9095646-9095719 chr4.trna7-HisGTG HisGTG GSM1525456 GAAGGTGCGGCTGGATCACCTCCTT