PtRF Id Plant Name tRF Type Tissue Gene Coordinates tRNA Name Anticodon GSM Number PMID Sequence PT-423 Oryza sativa tRF-1 inflorescences chr4:21598370-21598521 chr4.trna34-MetCAT MetCAT GSM647192 22862743 AATTTCAACCAAACTTTCAATTTT PT-424 Oryza sativa tRF-1 panicle, control chr4:21598370-21598521 chr4.trna34-MetCAT MetCAT GSM816731 22158467 AATTTCAACCAAACTTTCAATTTT PT-2189 Oryza sativa Japonica Group tRF-1 1.0-2.0 cm panicles, long-day growth conditions, 58S chr7:14188508-14188661 chr7.trna14-MetCAT MetCAT GSM2253109 27965387 GGTTAGTAGTCATCTGTGACGGGC PT-3987 Oryza sativa tRF-3 Seedling chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM455965 19903869 AAACCTGGCTCTGATACCA PT-3988 Oryza sativa Japonica Group tRF-3 O.sativa_Japonica_seed_Heukgyeong chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1847446 27797952 AAACCTGGCTCTGATACCA PT-6091 Oryza sativa Japonica Group tRF-3 0.5-1.0 cm panicles, long-day growth conditions, 58S chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253106 27965387 AACCTGGCTCTGATACCA PT-6092 Oryza sativa tRF-3 panicle, cold + salt chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816742 22158467 AACCTGGCTCTGATACCA PT-6093 Oryza sativa Indica Group tRF-3 fully expanded third leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2049385 27150822 AACCTGGCTCTGATACCA PT-6094 Oryza sativa Japonica Group tRF-3 rice ovary chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2402651 28166742 AACCTGGCTCTGATACCA PT-6101 Oryza sativa Japonica Group tRF-3 rice ovary chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2402653 28166742 AACCTGGCTCTGATACCA PT-6110 Oryza sativa Japonica Group tRF-3 Osaba1-1 rice leaves chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1547540 26233894 AACCTGGCTCTGATACCA PT-6111 Oryza sativa Japonica Group tRF-3 Rb49 leaves before treatment as control chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695940 26335702 AACCTGGCTCTGATACCA PT-6112 Oryza sativa tRF-3 Undifferentiated calli chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM686039 21525786 AACCTGGCTCTGATACCA PT-6120 Oryza sativa Japonica Group tRF-3 rice anther chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2402645 28166742 AACCTGGCTCTGATACCA PT-6121 Oryza sativa Indica Group tRF-3 drought tolerant Indica rice variety chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1921137 AACCTGGCTCTGATACCA PT-6156 Oryza sativa Japonica Group tRF-3 rice anther chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2402644 28166742 AACCTGGCTCTGATACCA PT-6183 Oryza sativa Japonica Group tRF-3 1.0-2.0 cm panicles, short-day growth conditions, NIL(MH) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253127 27965387 AACCTGGCTCTGATACCA PT-6184 Oryza sativa tRF-3 shoot, potassium-deficient medium+salt chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816729 22158467 AACCTGGCTCTGATACCA PT-6229 Oryza sativa tRF-3 rice seedlings chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM571078 21113019 AACCTGGCTCTGATACCA PT-6230 Oryza sativa tRF-3 shoot, control chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816719 22158467 AACCTGGCTCTGATACCA PT-6252 Oryza sativa tRF-3 Differentiated calli chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM686040 21525786 AACCTGGCTCTGATACCA PT-6299 Oryza sativa Japonica Group tRF-3 1.0-2.0 cm panicles, long-day growth conditions, 58S chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253108 27965387 AACCTGGCTCTGATACCA PT-6349 Oryza sativa Japonica Group tRF-3 rice anther chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2402642 28166742 AACCTGGCTCTGATACCA PT-6358 Oryza sativa Japonica Group tRF-3 rice anther chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2092608 27077850 AACCTGGCTCTGATACCA PT-6359 Oryza sativa Japonica Group tRF-3 rice anther chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2402640 28166742 AACCTGGCTCTGATACCA PT-6419 Oryza sativa tRF-3 root, potassium-deficient medium chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816713 22158467 AACCTGGCTCTGATACCA PT-6470 Oryza sativa tRF-3 young panicles (4cm) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM648140 22443269 AACCTGGCTCTGATACCA PT-6479 Oryza sativa tRF-3 young panicles (4cm) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM648141 22443269 AACCTGGCTCTGATACCA PT-6487 Oryza sativa Japonica Group tRF-3 rice anther chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2092605 27077850 AACCTGGCTCTGATACCA PT-6639 Oryza sativa Indica Group tRF-3 fully expanded third leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2049378 27150822 AACCTGGCTCTGATACCA PT-6657 Oryza sativa Japonica Group tRF-3 3.0-4.0 mm florets, long-day growth conditions, NIL(MH) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253122 27965387 AACCTGGCTCTGATACCA PT-6658 Oryza sativa tRF-3 seedling, salt chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816693 22158467 AACCTGGCTCTGATACCA PT-6659 Oryza sativa tRF-3 shoot, potassium-deficient medium chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816727 22158467 AACCTGGCTCTGATACCA PT-6687 Oryza sativa tRF-3 inflorescences chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM647194 22862743 AACCTGGCTCTGATACCA PT-6703 Oryza sativa Japonica Group tRF-3 rice anther chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2092607 27077850 AACCTGGCTCTGATACCA PT-6727 Oryza sativa Japonica Group tRF-3 1.0-2.0 cm panicles, long-day growth conditions, NIL(MH) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253120 27965387 AACCTGGCTCTGATACCA PT-6757 Oryza sativa Japonica Group tRF-3 1.0-2.0 cm panicles, short-day growth conditions, 58S chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253115 27965387 AACCTGGCTCTGATACCA PT-6765 Oryza sativa Japonica Group tRF-3 rice ovary chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2402652 28166742 AACCTGGCTCTGATACCA PT-6774 Oryza sativa Japonica Group tRF-3 rice ovary chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2402648 28166742 AACCTGGCTCTGATACCA PT-6791 Oryza sativa tRF-3 LYP9 rice chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1522109 25479006 AACCTGGCTCTGATACCA PT-6792 Oryza sativa Japonica Group tRF-3 Rb49 leaves with 24 hours post mock treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695943 26335702 AACCTGGCTCTGATACCA PT-6793 Oryza sativa Indica Group tRF-3 fully expanded third leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2049382 27150822 AACCTGGCTCTGATACCA PT-6833 Oryza sativa tRF-3 the fourth leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1525455 AACCTGGCTCTGATACCA PT-6840 Oryza sativa Japonica Group tRF-3 rice anther chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2402643 28166742 AACCTGGCTCTGATACCA PT-6850 Oryza sativa Japonica Group tRF-3 rice anther chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2402641 28166742 AACCTGGCTCTGATACCA PT-6865 Oryza sativa tRF-3 Rice spikelets chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2048342 27702997 AACCTGGCTCTGATACCA PT-6866 Oryza sativa Japonica Group tRF-3 3.0-4.0 mm florets, short-day growth conditions, 58S chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253116 27965387 AACCTGGCTCTGATACCA PT-6867 Oryza sativa tRF-3 rice seed chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM693280 21791435 AACCTGGCTCTGATACCA PT-6868 Oryza sativa tRF-3 panicle, salt chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816737 22158467 AACCTGGCTCTGATACCA PT-6876 Oryza sativa tRF-3 Panicle chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288579 26471296 AACCTGGCTCTGATACCA PT-6877 Oryza sativa Japonica Group tRF-3 rice ovary chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2402650 28166742 AACCTGGCTCTGATACCA PT-6898 Oryza sativa Indica Group tRF-3 fully expanded third leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2049379 27150822 AACCTGGCTCTGATACCA PT-6899 Oryza sativa tRF-3 Flag Leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288572 26471296 AACCTGGCTCTGATACCA PT-6907 Oryza sativa Japonica Group tRF-3 0.5-1.0 cm panicles, short-day growth conditions, NIL(MH) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253125 27965387 AACCTGGCTCTGATACCA PT-6944 Oryza sativa Japonica Group tRF-3 rice anther chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2092603 27077850 AACCTGGCTCTGATACCA PT-6952 Oryza sativa Indica Group tRF-3 fully expanded third leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2049383 27150822 AACCTGGCTCTGATACCA PT-6974 Oryza sativa tRF-3 Rice spikelets chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2048351 27702997 AACCTGGCTCTGATACCA PT-6975 Oryza sativa Japonica Group tRF-3 3.0-4.0 mm florets, long-day growth conditions, 58S chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253110 27965387 AACCTGGCTCTGATACCA PT-6976 Oryza sativa tRF-3 seedling, cold chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816695 22158467 AACCTGGCTCTGATACCA PT-6997 Oryza sativa Japonica Group tRF-3 MDJ8 leaves with 24 hours post mock treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695935 26335702 AACCTGGCTCTGATACCA PT-6998 Oryza sativa tRF-3 Flag Leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288574 26471296 AACCTGGCTCTGATACCA PT-7052 Oryza sativa Japonica Group tRF-3 rice anther chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2092606 27077850 AACCTGGCTCTGATACCA PT-7053 Oryza sativa Japonica Group tRF-3 Rb49 leaves with 4 hours post mock treatment, technical replicate 2 chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695947 26335702 AACCTGGCTCTGATACCA PT-7076 Oryza sativa tRF-3 root, potassium-deficient medium +salt chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816715 22158467 AACCTGGCTCTGATACCA PT-7091 Oryza sativa tRF-3 Panicle chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288566 26471296 AACCTGGCTCTGATACCA PT-7136 Oryza sativa Japonica Group tRF-3 MDJ8 leaves before treatment as control, biological replicate 2 chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695939 26335702 AACCTGGCTCTGATACCA PT-7137 Oryza sativa tRF-3 mature rice grain chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM329298 18716673 AACCTGGCTCTGATACCA PT-7138 Oryza sativa tRF-3 rice seed chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM693279 21791435 AACCTGGCTCTGATACCA PT-7139 Oryza sativa tRF-3 seedling, drought chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816691 22158467 AACCTGGCTCTGATACCA PT-7164 Oryza sativa tRF-3 panicle, control chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816732 22158467 AACCTGGCTCTGATACCA PT-7174 Oryza sativa tRF-3 root, nitrogen-deficient medium chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816711 22158467 AACCTGGCTCTGATACCA PT-7199 Oryza sativa tRF-3 rice seed chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1900090 26681181 AACCTGGCTCTGATACCA PT-7200 Oryza sativa Indica Group tRF-3 fully expanded third leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2049380 27150822 AACCTGGCTCTGATACCA PT-7201 Oryza sativa tRF-3 the fourth leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1525456 AACCTGGCTCTGATACCA PT-7227 Oryza sativa tRF-3 Panicle chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288571 26471296 AACCTGGCTCTGATACCA PT-7244 Oryza sativa Japonica Group tRF-3 MDJ8 leaves with 24 hours post PXO61 treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695938 26335702 AACCTGGCTCTGATACCA PT-7251 Oryza sativa Indica Group tRF-3 fully expanded third leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2049386 27150822 AACCTGGCTCTGATACCA PT-7274 Oryza sativa tRF-3 Flag Leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288575 26471296 AACCTGGCTCTGATACCA PT-7275 Oryza sativa tRF-3 Panicle chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288568 26471296 AACCTGGCTCTGATACCA PT-7276 Oryza sativa Indica Group tRF-3 fully expanded third leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2049377 27150822 AACCTGGCTCTGATACCA PT-7277 Oryza sativa Japonica Group tRF-3 1.0-2.0 cm panicles, long-day growth conditions, NIL(MH) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253121 27965387 AACCTGGCTCTGATACCA PT-7278 Oryza sativa Japonica Group tRF-3 rice ovary chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2402646 28166742 AACCTGGCTCTGATACCA PT-7279 Oryza sativa Japonica Group tRF-3 wild type rice leaves chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1547539 26233894 AACCTGGCTCTGATACCA PT-7280 Oryza sativa Japonica Group tRF-3 3.0-4.0 mm florets, long-day growth conditions, NIL(MH) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253123 27965387 AACCTGGCTCTGATACCA PT-7312 Oryza sativa Indica Group tRF-3 fully expanded third leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2049381 27150822 AACCTGGCTCTGATACCA PT-7313 Oryza sativa tRF-3 N2Y6 rice chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1522105 25479006 AACCTGGCTCTGATACCA PT-7314 Oryza sativa tRF-3 shoot, sulfate-deficient medium chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816723 22158467 AACCTGGCTCTGATACCA PT-7341 Oryza sativa tRF-3 panicle, drought chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816735 22158467 AACCTGGCTCTGATACCA PT-7363 Oryza sativa Japonica Group tRF-3 0.5-1.0 cm panicles, long-day growth conditions, 58S chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253107 27965387 AACCTGGCTCTGATACCA PT-7364 Oryza sativa Japonica Group tRF-3 1.0-2.0 cm panicles, pms1 ox negative, long-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253131 27965387 AACCTGGCTCTGATACCA PT-7365 Oryza sativa tRF-3 panicle, OsDCL1 RNAi chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816746 22158467 AACCTGGCTCTGATACCA PT-7373 Oryza sativa Japonica Group tRF-3 MDJ8 leaves with 4 hours post mock treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695934 26335702 AACCTGGCTCTGATACCA PT-7387 Oryza sativa Japonica Group tRF-3 Rb49 leaves with 24 hours post PXO61 treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695946 26335702 AACCTGGCTCTGATACCA PT-7394 Oryza sativa Japonica Group tRF-3 MDJ8 leaves with 2 hours post PXO61 treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695936 26335702 AACCTGGCTCTGATACCA PT-7408 Oryza sativa tRF-3 N2Y6 rice chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1522106 25479006 AACCTGGCTCTGATACCA PT-7417 Oryza sativa Japonica Group tRF-3 Rb49 leaves with 2 hours post PXO61 treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695944 26335702 AACCTGGCTCTGATACCA PT-7425 Oryza sativa tRF-3 Panicle chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288569 26471296 AACCTGGCTCTGATACCA PT-7459 Oryza sativa Indica Group tRF-3 fully expanded third leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2049384 27150822 AACCTGGCTCTGATACCA PT-7460 Oryza sativa Japonica Group tRF-3 1.0-2.0 cm panicles, pms1 ox negative, long-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253130 27965387 AACCTGGCTCTGATACCA PT-7487 Oryza sativa tRF-3 seedling, OsDCL1 RNAi chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816703 22158467 AACCTGGCTCTGATACCA PT-7502 Oryza sativa Japonica Group tRF-3 Rb49 leaves with 4 hours post PXO61 treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695945 26335702 AACCTGGCTCTGATACCA PT-7503 Oryza sativa Japonica Group tRF-3 MDJ8 leaves before treatment as control, biological replicate 1 chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695932 26335702 AACCTGGCTCTGATACCA PT-7504 Oryza sativa Japonica Group tRF-3 Rb49 leaves with 4 hours post mock treatment, technical replicate 1 chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695942 26335702 AACCTGGCTCTGATACCA PT-7511 Oryza sativa Japonica Group tRF-3 3.0-4.0 mm florets, short-day growth conditions, NIL(MH) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253129 27965387 AACCTGGCTCTGATACCA PT-7512 Oryza sativa tRF-3 panicle, drought chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816734 22158467 AACCTGGCTCTGATACCA PT-7541 Oryza sativa tRF-3 N2Y6 rice chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1522107 25479006 AACCTGGCTCTGATACCA PT-7542 Oryza sativa tRF-3 young panicles (4cm) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM648139 22443269 AACCTGGCTCTGATACCA PT-7566 Oryza sativa Japonica Group tRF-3 rice ovary chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2402647 28166742 AACCTGGCTCTGATACCA PT-7628 Oryza sativa tRF-3 rice seed chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1900092 26681181 AACCTGGCTCTGATACCA PT-7667 Oryza sativa Japonica Group tRF-3 MDJ8 leaves with 2 hours post mock treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695933 26335702 AACCTGGCTCTGATACCA PT-7668 Oryza sativa Japonica Group tRF-3 Rb49 leaves with 2 hours post mock treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695941 26335702 AACCTGGCTCTGATACCA PT-7683 Oryza sativa Japonica Group tRF-3 1.0-2.0 cm panicles, pms1 RNAi positive, long-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253134 27965387 AACCTGGCTCTGATACCA PT-7684 Oryza sativa tRF-3 rice seedlings chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM571077 21113019 AACCTGGCTCTGATACCA PT-7692 Oryza sativa tRF-3 Flag Leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288577 26471296 AACCTGGCTCTGATACCA PT-7722 Oryza sativa Japonica Group tRF-3 1.0-2.0 cm panicles, long-day growth conditions, 58S chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253109 27965387 AACCTGGCTCTGATACCA PT-7723 Oryza sativa Japonica Group tRF-3 3.0-4.0 mm florets, short-day growth conditions, 58S chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253117 27965387 AACCTGGCTCTGATACCA PT-7724 Oryza sativa tRF-3 shoot, phosphate-deficient medium chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816721 22158467 AACCTGGCTCTGATACCA PT-7740 Oryza sativa Japonica Group tRF-3 1.0-2.0 cm panicles, pms1 RNAi negative, long-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253137 27965387 AACCTGGCTCTGATACCA PT-7741 Oryza sativa tRF-3 root, drought chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816717 22158467 AACCTGGCTCTGATACCA PT-7742 Oryza sativa tRF-3 panicle, OsDCL1 RNAi chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816748 22158467 AACCTGGCTCTGATACCA PT-7770 Oryza sativa Japonica Group tRF-3 1.0-2.0 cm panicles, pms1 RNAi negative, long-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253136 27965387 AACCTGGCTCTGATACCA PT-7840 Oryza sativa tRF-3 panicle, control chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816731 22158467 AACCTGGCTCTGATACCA PT-7901 Oryza sativa Japonica Group tRF-3 1.0-2.0 cm panicles, pms1 RNAi positive, long-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253135 27965387 AACCTGGCTCTGATACCA PT-7911 Oryza sativa tRF-3 inflorescences chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM647193 22862743 AACCTGGCTCTGATACCA PT-7919 Oryza sativa Japonica Group tRF-3 rice ovary chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2402649 28166742 AACCTGGCTCTGATACCA PT-7970 Oryza sativa Japonica Group tRF-3 0.5-1.0 cm panicles, short-day growth conditions, 58S chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253113 27965387 AACCTGGCTCTGATACCA PT-8008 Oryza sativa Japonica Group tRF-3 3.0-4.0 mm florets, long-day growth conditions, 58S chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253111 27965387 AACCTGGCTCTGATACCA PT-8009 Oryza sativa Japonica Group tRF-3 1.0-2.0 cm panicles, pms1 ox positive, long-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253132 27965387 AACCTGGCTCTGATACCA PT-8033 Oryza sativa tRF-3 inflorescences chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM647192 22862743 AACCTGGCTCTGATACCA PT-8041 Oryza sativa Japonica Group tRF-3 0.5-1.0 cm panicles, long-day growth conditions, NIL(MH) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253119 27965387 AACCTGGCTCTGATACCA PT-8042 Oryza sativa tRF-3 root, sulfate-deficient medium chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816709 22158467 AACCTGGCTCTGATACCA PT-8144 Oryza sativa tRF-3 LYP9 rice chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1522108 25479006 AACCTGGCTCTGATACCA PT-8176 Oryza sativa Japonica Group tRF-3 rice anther chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2092604 27077850 AACCTGGCTCTGATACCA PT-8192 Oryza sativa tRF-3 rice seed chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1900091 26681181 AACCTGGCTCTGATACCA PT-8229 Oryza sativa tRF-3 young panicles (4cm) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM648142 22443269 AACCTGGCTCTGATACCA PT-8267 Oryza sativa Japonica Group tRF-3 1.0-2.0 cm panicles, pms1 ox positive, long-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253133 27965387 AACCTGGCTCTGATACCA PT-8284 Oryza sativa Japonica Group tRF-3 MDJ8 leaves with 4 hours post PXO61 treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695937 26335702 AACCTGGCTCTGATACCA PT-19254 Oryza sativa tRF-3 LYP9 rice chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1522110 25479006 ACCTGGCTCTGATACCA PT-26734 Oryza sativa Japonica Group tRF-5 shoot chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM898991 22537016 ATCAGAGTGGCGCAGCGG PT-26847 Oryza sativa tRF-5 Seedling chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM455962 19903869,27681945 ATCAGAGTGGCGCAGCGGA PT-26909 Oryza sativa tRF-5 mature rice grain chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM329296 18716673 ATCAGAGTGGCGCAGCGGA PT-27011 Oryza sativa tRF-5 DCL1IR-2 seedling chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM520637 20381393,27681945 ATCAGAGTGGCGCAGCGGA PT-27170 Oryza sativa tRF-5 seedling, cold chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816695 22158467 ATCAGAGTGGCGCAGCGGA PT-27251 Oryza sativa tRF-5 inflorescences chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM647193 22862743 ATCAGAGTGGCGCAGCGGAA PT-27277 Oryza sativa Japonica Group tRF-5 1.0-2.0 cm panicles, NIL(MH), short-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253140 27965387 ATCAGAGTGGCGCAGCGGAA PT-27290 Oryza sativa tRF-5 shoot, phosphate-deficient medium chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816721 22158467 ATCAGAGTGGCGCAGCGGAA PT-27379 Oryza sativa tRF-5 Seedling chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM455965 19903869 ATCAGAGTGGCGCAGCGGAA PT-27410 Oryza sativa tRF-5 seedlings chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM434596 20202174 ATCAGAGTGGCGCAGCGGAA PT-27425 Oryza sativa tRF-5 rdr2-2 seedling chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM520639 20381393,27681945 ATCAGAGTGGCGCAGCGGAA PT-27440 Oryza sativa Japonica Group tRF-5 1.0-2.0 cm panicles, 58S, long-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253139 27965387 ATCAGAGTGGCGCAGCGGAA PT-27500 Oryza sativa Japonica Group tRF-5 1.0-2.0 cm panicles, NIL(MH), long-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253138 27965387 ATCAGAGTGGCGCAGCGGAA PT-27515 Oryza sativa Japonica Group tRF-5 1.0-2.0 cm panicles, 58S, short-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253141 27965387 ATCAGAGTGGCGCAGCGGAA PT-27623 Oryza sativa tRF-5 inflorescences chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM647194 22862743 ATCAGAGTGGCGCAGCGGAA PT-27667 Oryza sativa tRF-5 panicle, OsDCL1 RNAi chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816748 22158467 ATCAGAGTGGCGCAGCGGAA PT-27698 Oryza sativa tRF-5 inflorescences chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM647192 22862743 ATCAGAGTGGCGCAGCGGAA PT-27722 Oryza sativa Japonica Group tRF-5 0.5-1.0 cm panicles, short-day growth conditions, NIL(MH) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253124 27965387 ATCAGAGTGGCGCAGCGGAAG PT-27723 Oryza sativa Japonica Group tRF-5 1.0-2.0 cm panicles, pms1 RNAi positive, long-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253135 27965387 ATCAGAGTGGCGCAGCGGAAG PT-27745 Oryza sativa Japonica Group tRF-5 1.0-2.0 cm panicles, pms1 ox negative, long-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253130 27965387 ATCAGAGTGGCGCAGCGGAAG PT-27760 Oryza sativa tRF-5 Flag Leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288572 26471296 ATCAGAGTGGCGCAGCGGAAG PT-27803 Oryza sativa Japonica Group tRF-5 3.0-4.0 mm florets, long-day growth conditions, 58S chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253111 27965387 ATCAGAGTGGCGCAGCGGAAG PT-27804 Oryza sativa Japonica Group tRF-5 0.5-1.0 cm panicles, short-day growth conditions, 58S chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253113 27965387 ATCAGAGTGGCGCAGCGGAAG PT-27819 Oryza sativa tRF-5 Panicle chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288568 26471296 ATCAGAGTGGCGCAGCGGAAG PT-27890 Oryza sativa Japonica Group tRF-5 Rb49 leaves before treatment as control chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695940 26335702 ATCAGAGTGGCGCAGCGGAAG PT-27891 Oryza sativa tRF-5 Panicle chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288569 26471296 ATCAGAGTGGCGCAGCGGAAG PT-27906 Oryza sativa tRF-5 Flag Leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288575 26471296 ATCAGAGTGGCGCAGCGGAAG PT-27928 Oryza sativa Japonica Group tRF-5 3.0-4.0 mm florets, short-day growth conditions, 58S chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253117 27965387 ATCAGAGTGGCGCAGCGGAAG PT-27971 Oryza sativa Japonica Group tRF-5 wild type rice leaves chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1547539 26233894 ATCAGAGTGGCGCAGCGGAAG PT-27993 Oryza sativa tRF-5 Flag Leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288576 26471296 ATCAGAGTGGCGCAGCGGAAG PT-28099 Oryza sativa tRF-5 Flag Leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288574 26471296 ATCAGAGTGGCGCAGCGGAAG PT-28116 Oryza sativa Japonica Group tRF-5 Osaba1-1 rice leaves chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1547540 26233894 ATCAGAGTGGCGCAGCGGAAG PT-28159 Oryza sativa tRF-5 Flag Leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288573 26471296 ATCAGAGTGGCGCAGCGGAAG PT-28174 Oryza sativa tRF-5 panicle, salt chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816738 22158467 ATCAGAGTGGCGCAGCGGAAG PT-28245 Oryza sativa tRF-5 Flag Leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288577 26471296 ATCAGAGTGGCGCAGCGGAAG PT-28260 Oryza sativa tRF-5 rice seed small RNA chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM302812 19103661 ATCAGAGTGGCGCAGCGGAAG PT-28381 Oryza sativa tRF-5 shoot, potassium-deficient medium chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816727 22158467 ATCAGAGTGGCGCAGCGGAAG PT-28417 Oryza sativa Japonica Group tRF-5 MDJ8 leaves with 24 hours post PXO61 treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695938 26335702 ATCAGAGTGGCGCAGCGGAAG PT-28503 Oryza sativa tRF-5 Panicle chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288579 26471296 ATCAGAGTGGCGCAGCGGAAG PT-28786 Oryza sativa tRF-5 Panicle chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288567 26471296 ATCAGAGTGGCGCAGCGGAAG PT-28815 Oryza sativa tRF-5 Panicle chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288566 26471296 ATCAGAGTGGCGCAGCGGAAG PT-28965 Oryza sativa tRF-5 seedling, OsDCL1 RNAi chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816703 22158467 ATCAGAGTGGCGCAGCGGAAGC PT-28966 Oryza sativa tRF-5 root, nitrogen-deficient medium chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816711 22158467 ATCAGAGTGGCGCAGCGGAAGC PT-29003 Oryza sativa tRF-5 shoot, potassium-deficient medium+salt chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816729 22158467 ATCAGAGTGGCGCAGCGGAAGC PT-29034 Oryza sativa tRF-5 shoot, control chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816719 22158467 ATCAGAGTGGCGCAGCGGAAGC PT-29075 Oryza sativa tRF-5 shoot, sulfate-deficient medium chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816723 22158467 ATCAGAGTGGCGCAGCGGAAGC PT-29114 Oryza sativa tRF-5 Wild type seedling chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM520640 20381393,27681945 ATCAGAGTGGCGCAGCGGAAGC PT-29145 Oryza sativa tRF-5 dcl3a-17 seedling chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM520638 20381393,27681945 ATCAGAGTGGCGCAGCGGAAGC PT-29154 Oryza sativa tRF-5 inflorescences chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM647195 22862743 ATCAGAGTGGCGCAGCGGAAGC PT-29216 Oryza sativa Japonica Group tRF-5 MDJ8 leaves with 2 hours post mock treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695933 26335702 ATCAGAGTGGCGCAGCGGAAGCG PT-29267 Oryza sativa Japonica Group tRF-5 1.0-2.0 cm panicles, pms1 ox negative, long-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253130 27965387 ATCAGAGTGGCGCAGCGGAAGCG PT-29268 Oryza sativa Japonica Group tRF-5 1.0-2.0 cm panicles, pms1 ox positive, long-day growth conditions chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM2253132 27965387 ATCAGAGTGGCGCAGCGGAAGCG PT-29312 Oryza sativa Japonica Group tRF-5 MDJ8 leaves with 4 hours post PXO61 treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695937 26335702 ATCAGAGTGGCGCAGCGGAAGCG PT-29397 Oryza sativa Japonica Group tRF-5 MDJ8 leaves with 24 hours post mock treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695935 26335702 ATCAGAGTGGCGCAGCGGAAGCG PT-29462 Oryza sativa Japonica Group tRF-5 MDJ8 leaves before treatment as control, biological replicate 1 chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695932 26335702 ATCAGAGTGGCGCAGCGGAAGCG PT-29519 Oryza sativa Japonica Group tRF-5 Rb49 leaves with 4 hours post mock treatment, technical replicate 2 chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695947 26335702 ATCAGAGTGGCGCAGCGGAAGCG PT-29520 Oryza sativa Japonica Group tRF-5 MDJ8 leaves with 2 hours post PXO61 treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695936 26335702 ATCAGAGTGGCGCAGCGGAAGCG PT-29521 Oryza sativa Japonica Group tRF-5 Rb49 leaves with 24 hours post mock treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695943 26335702 ATCAGAGTGGCGCAGCGGAAGCG PT-29536 Oryza sativa Japonica Group tRF-5 MDJ8 leaves with 4 hours post mock treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695934 26335702 ATCAGAGTGGCGCAGCGGAAGCG PT-29551 Oryza sativa Japonica Group tRF-5 Rb49 leaves with 2 hours post mock treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695941 26335702 ATCAGAGTGGCGCAGCGGAAGCG PT-29552 Oryza sativa Japonica Group tRF-5 Rb49 leaves with 4 hours post mock treatment, technical replicate 1 chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695942 26335702 ATCAGAGTGGCGCAGCGGAAGCG PT-29553 Oryza sativa Japonica Group tRF-5 Rb49 leaves with 4 hours post PXO61 treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695945 26335702 ATCAGAGTGGCGCAGCGGAAGCG PT-29554 Oryza sativa Japonica Group tRF-5 Rb49 leaves with 24 hours post PXO61 treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695946 26335702 ATCAGAGTGGCGCAGCGGAAGCG PT-29555 Oryza sativa Japonica Group tRF-5 Rb49 leaves with 2 hours post PXO61 treatment chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695944 26335702 ATCAGAGTGGCGCAGCGGAAGCG PT-29556 Oryza sativa Japonica Group tRF-5 MDJ8 leaves before treatment as control, biological replicate 2 chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1695939 26335702 ATCAGAGTGGCGCAGCGGAAGCG PT-29569 Oryza sativa tRF-5 young panicles (4cm) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM648139 22443269 ATCAGAGTGGCGCAGCGGAAGCGTG PT-29570 Oryza sativa tRF-5 young panicles (4cm) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM648141 22443269 ATCAGAGTGGCGCAGCGGAAGCGTG PT-29571 Oryza sativa tRF-5 young panicles (4cm) chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM648142 22443269 ATCAGAGTGGCGCAGCGGAAGCGTG PT-29591 Oryza sativa tRF-5 Wild type seedling chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM520636 20381393,27681945 ATCAGAGTGGCGCAGCGGAAGCGTGGT PT-54866 Oryza sativa Japonica Group tRF-5 MDJ8 leaves with 2 hours post PXO61 treatment chr4:9109502-9109575 chr4.trna9-MetCAT MetCAT GSM1695936 26335702 ATCTCTGGTGCCATTATTCCT PT-110171 Oryza sativa tRF-3 panicle, control chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816730 22158467 CGAAACCTGGCTCTGATACCA PT-110201 Oryza sativa tRF-3 panicle, salt chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816738 22158467 CGAAACCTGGCTCTGATACCA PT-110214 Oryza sativa tRF-3 rice seed small RNA chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM302812 19103661 CGAAACCTGGCTCTGATACCA PT-110215 Oryza sativa tRF-3 inflorescences chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM647195 22862743 CGAAACCTGGCTCTGATACCA PT-110216 Oryza sativa tRF-3 Panicle chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288567 26471296 CGAAACCTGGCTCTGATACCA PT-110226 Oryza sativa tRF-3 root, control chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816705 22158467 CGAAACCTGGCTCTGATACCA PT-110239 Oryza sativa tRF-3 Flag Leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288576 26471296 CGAAACCTGGCTCTGATACCA PT-110240 Oryza sativa tRF-3 root, phosphate-deficient medium chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816707 22158467 CGAAACCTGGCTCTGATACCA PT-154319 Oryza sativa tRF-3 panicle, control chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816730 22158467 GAAACCTGGCTCTGATACCA PT-154320 Oryza sativa tRF-3 panicle, drought chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM816733 22158467 GAAACCTGGCTCTGATACCA PT-154327 Oryza sativa tRF-3 rice seed small RNA chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM302812 19103661 GAAACCTGGCTCTGATACCA PT-199833 Oryza sativa tRF-5 the fourth leaf chr1:33533015-33533087 chr1.trna35-MetCAT MetCAT GSM1525455 GCCGTAGCGAAAGCGA PT-199834 Oryza sativa tRF-5 Wild type seedling chr1:33533015-33533087 chr1.trna35-MetCAT MetCAT GSM520640 20381393,27681945 GCCGTAGCGAAAGCGAGTCTTCA PT-438025 Oryza sativa tRF-3 Flag Leaf chr2:780010-780081 chr2.trna1-MetCAT MetCAT GSM1288573 26471296 TCGAAACCTGGCTCTGATACCA